Wall clock time and date at job start Mon Mar 30 2020 05:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.31155 * 120.00368 * 2 1 4 4 Cl 1.73599 * 120.00322 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99492 * 180.02562 * 2 1 3 6 6 N 1.46903 * 109.46925 * 274.99650 * 5 2 1 7 7 C 1.46846 * 111.00083 * 294.21293 * 6 5 2 8 8 C 1.53041 * 109.52359 * 174.15750 * 7 6 5 9 9 C 1.53128 * 109.27294 * 59.18153 * 8 7 6 10 10 C 1.50696 * 109.56841 * 182.41075 * 9 8 7 11 11 H 1.08003 * 120.00374 * 119.71957 * 10 9 8 12 12 C 1.37879 * 120.00039 * 299.70675 * 10 9 8 13 13 N 1.31524 * 119.99843 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99992 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47138 * 89.99436 * 14 12 10 16 16 H 1.48506 * 109.47123 * 209.99207 * 14 12 10 17 17 H 1.48500 * 109.47402 * 329.99571 * 14 12 10 18 18 C 1.53114 * 109.16044 * 302.34174 * 9 8 7 19 19 C 1.46844 * 111.00020 * 170.00108 * 6 5 2 20 20 H 1.09007 * 109.47062 * 89.99978 * 1 2 3 21 21 H 1.08990 * 109.47479 * 209.99984 * 1 2 3 22 22 H 1.08997 * 109.47020 * 330.00425 * 1 2 3 23 23 H 1.08005 * 119.99816 * 359.72317 * 3 2 1 24 24 H 1.09000 * 109.47475 * 35.00067 * 5 2 1 25 25 H 1.09004 * 109.46846 * 155.00394 * 5 2 1 26 26 H 1.08998 * 109.46283 * 294.17736 * 7 6 5 27 27 H 1.09001 * 109.46059 * 54.14962 * 7 6 5 28 28 H 1.08993 * 109.50165 * 299.24142 * 8 7 6 29 29 H 1.08993 * 109.50343 * 179.11907 * 8 7 6 30 30 H 1.08990 * 109.52445 * 62.25232 * 9 8 7 31 31 H 0.97002 * 119.99219 * 180.02562 * 13 12 10 32 32 H 1.08994 * 109.50912 * 297.71973 * 18 9 8 33 33 H 1.09001 * 109.50338 * 177.59472 * 18 9 8 34 34 H 1.08998 * 109.46536 * 305.85873 * 19 6 5 35 35 H 1.09007 * 109.46164 * 65.83683 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1358 0.0000 4 17 3.8989 1.1358 -0.0007 5 6 2.2605 -1.3052 -0.0006 6 7 2.4008 -1.7902 1.3790 7 6 3.2506 -0.8904 2.1692 8 6 3.2562 -1.3446 3.6307 9 6 3.7852 -2.7792 3.7121 10 6 3.7381 -3.2542 5.1415 11 1 3.1447 -4.1175 5.4044 12 6 4.4527 -2.5869 6.1136 13 7 4.4119 -3.0018 7.3611 14 14 5.4787 -1.0936 5.6590 15 1 4.6488 0.1322 5.7785 16 1 6.6425 -0.9947 6.5762 17 1 5.9604 -1.2308 4.2611 18 6 2.9116 -3.6872 2.8422 19 6 2.9159 -3.1650 1.4036 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6229 2.0712 -0.0045 24 1 1.7131 -2.0405 -0.5904 25 1 3.2488 -1.1540 -0.4348 26 1 4.2675 -0.9142 1.7776 27 1 2.8610 0.1256 2.1063 28 1 2.2415 -1.3078 4.0270 29 1 3.8995 -0.6858 4.2140 30 1 4.8135 -2.8093 3.3520 31 1 4.9144 -2.5320 8.0450 32 1 1.8915 -3.6873 3.2261 33 1 3.3087 -4.7021 2.8621 34 1 2.2834 -3.8011 0.7845 35 1 3.9346 -3.1782 1.0157 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397210123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:00 Heat of formation + Delta-G solvation = 5.801789 kcal Electronic energy + Delta-G solvation = -16169.487047 eV Core-core repulsion = 13614.363303 eV Total energy + Delta-G solvation = -2555.123744 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.86363 -36.81031 -35.32577 -33.21480 -31.33728 -30.15781 -27.31882 -26.94781 -24.24270 -22.49852 -21.26399 -18.80451 -18.64511 -16.64575 -15.87388 -15.56120 -15.17017 -14.42446 -14.07808 -13.50961 -13.31427 -12.91534 -12.90266 -12.33555 -12.19724 -12.18091 -11.79936 -11.47171 -11.38550 -11.32100 -10.79340 -10.69773 -10.40299 -10.02883 -9.84337 -9.56300 -9.06175 -8.90358 -8.83045 -8.46217 -7.87281 -6.01819 -3.99675 1.78817 2.36426 3.31534 3.41741 3.44119 4.35203 4.46431 4.70558 4.89693 5.29858 5.38558 5.44284 5.52067 5.56580 5.63167 5.78654 5.80575 5.95807 6.01897 6.13668 6.17902 6.26331 6.41779 6.46136 6.50078 6.79242 6.88616 6.99534 7.27581 7.44733 7.57116 7.69408 7.84897 8.59375 9.02911 9.61785 11.11713 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.028201 B = 0.007646 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.623573 B = 3661.127134 C = 4199.947568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.089 4.089 3 C -0.124 4.124 4 Cl -0.094 7.094 5 C 0.076 3.924 6 N -0.526 5.526 7 C 0.055 3.945 8 C -0.116 4.116 9 C 0.013 3.987 10 C -0.509 4.509 11 H 0.073 0.927 12 C 0.068 3.932 13 N -0.904 5.904 14 Si 0.885 3.115 15 H -0.278 1.278 16 H -0.299 1.299 17 H -0.267 1.267 18 C -0.095 4.095 19 C 0.057 3.943 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.065 0.935 23 H 0.145 0.855 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.021 0.979 31 H 0.262 0.738 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 7.128 -16.858 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.170 4.170 4 Cl -0.066 7.066 5 C -0.052 4.052 6 N -0.250 5.250 7 C -0.072 4.072 8 C -0.154 4.154 9 C -0.006 4.006 10 C -0.547 4.547 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.716 3.284 15 H -0.205 1.205 16 H -0.226 1.226 17 H -0.192 1.192 18 C -0.133 4.133 19 C -0.070 4.070 20 H 0.088 0.912 21 H 0.099 0.901 22 H 0.084 0.916 23 H 0.162 0.838 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.767 7.135 -16.456 18.841 hybrid contribution 1.516 1.004 -0.416 1.865 sum -4.251 8.138 -16.872 19.208 Atomic orbital electron populations 1.20747 0.90099 1.03713 1.02012 1.21900 0.96689 0.94320 0.96170 1.24250 0.83984 0.99720 1.09017 1.98356 1.12717 1.98797 1.96717 1.21205 0.98508 0.93738 0.91721 1.61964 1.51275 1.02647 1.09144 1.22327 0.93874 0.95674 0.95358 1.22015 1.01715 0.99235 0.92396 1.19183 0.94351 0.90889 0.96196 1.21071 1.29045 1.14387 0.90153 0.90878 1.25018 0.96174 0.97191 0.94872 1.69911 1.42561 1.40942 1.00839 0.86872 0.79682 0.83644 0.78188 1.20541 1.22628 1.19229 1.21485 1.01190 0.98635 0.91981 1.22196 0.96989 0.88458 0.99381 0.91199 0.90112 0.91650 0.83776 0.90231 0.93530 0.95503 0.91713 0.91449 0.93517 0.96138 0.92797 0.91798 0.92369 0.91846 0.95606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.03 36.01 0.36 -0.67 16 2 C -0.09 -1.06 4.96 -101.10 -0.50 -1.56 16 3 C -0.12 -1.45 9.34 28.97 0.27 -1.18 16 4 Cl -0.09 -1.27 24.68 -51.86 -1.28 -2.55 16 5 C 0.08 1.02 4.92 -4.97 -0.02 1.00 16 6 N -0.53 -8.76 4.65 -236.11 -1.10 -9.86 16 7 C 0.06 1.04 4.09 -3.83 -0.02 1.02 16 8 C -0.12 -2.60 4.84 -26.64 -0.13 -2.73 16 9 C 0.01 0.31 1.75 -91.65 -0.16 0.14 16 10 C -0.51 -14.51 9.15 -34.44 -0.31 -14.83 16 11 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 12 C 0.07 2.01 5.45 -17.81 -0.10 1.91 16 13 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 14 Si 0.89 22.65 24.36 -169.99 -4.14 18.51 16 15 H -0.28 -6.94 6.89 56.52 0.39 -6.55 16 16 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 17 H -0.27 -6.62 6.53 56.52 0.37 -6.25 16 18 C -0.10 -1.92 5.32 -26.65 -0.14 -2.06 16 19 C 0.06 0.96 5.46 -3.83 -0.02 0.94 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 22 H 0.06 0.56 8.06 -51.93 -0.42 0.15 16 23 H 0.14 1.35 8.04 -52.48 -0.42 0.92 16 24 H 0.08 0.94 7.99 -51.93 -0.41 0.53 16 25 H 0.05 0.65 6.51 -51.93 -0.34 0.32 16 26 H 0.03 0.52 7.68 -51.93 -0.40 0.12 16 27 H 0.06 1.15 5.52 -51.93 -0.29 0.86 16 28 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.05 1.11 3.38 -51.93 -0.18 0.94 16 30 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.92 8.02 -51.93 -0.42 0.50 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 281.02 15.07 4.23 4.23 Total: -1.00 -30.50 281.02 -7.66 -38.16 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.38 Total: -3.12 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -0.77 Total: -18.00 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.32 Total: -37.24 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.14 Total: 18.51 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.28 Total: -2.55 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.50 -7.66 -38.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397210123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.966 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds