Wall clock time and date at job start Mon Mar 30 2020 05:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.31155 * 120.00368 * 2 1 4 4 Cl 1.73599 * 120.00322 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99492 * 180.02562 * 2 1 3 6 6 N 1.46903 * 109.46925 * 274.99650 * 5 2 1 7 7 C 1.46846 * 111.00083 * 294.21293 * 6 5 2 8 8 C 1.53041 * 109.52359 * 174.15750 * 7 6 5 9 9 C 1.53128 * 109.27294 * 59.18153 * 8 7 6 10 10 C 1.50696 * 109.56841 * 182.41075 * 9 8 7 11 11 H 1.08003 * 120.00374 * 119.71957 * 10 9 8 12 12 C 1.37879 * 120.00039 * 299.70675 * 10 9 8 13 13 N 1.31524 * 119.99843 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99992 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47138 * 89.99436 * 14 12 10 16 16 H 1.48506 * 109.47123 * 209.99207 * 14 12 10 17 17 H 1.48500 * 109.47402 * 329.99571 * 14 12 10 18 18 C 1.53114 * 109.16044 * 302.34174 * 9 8 7 19 19 C 1.46844 * 111.00020 * 170.00108 * 6 5 2 20 20 H 1.09007 * 109.47062 * 89.99978 * 1 2 3 21 21 H 1.08990 * 109.47479 * 209.99984 * 1 2 3 22 22 H 1.08997 * 109.47020 * 330.00425 * 1 2 3 23 23 H 1.08005 * 119.99816 * 359.72317 * 3 2 1 24 24 H 1.09000 * 109.47475 * 35.00067 * 5 2 1 25 25 H 1.09004 * 109.46846 * 155.00394 * 5 2 1 26 26 H 1.08998 * 109.46283 * 294.17736 * 7 6 5 27 27 H 1.09001 * 109.46059 * 54.14962 * 7 6 5 28 28 H 1.08993 * 109.50165 * 299.24142 * 8 7 6 29 29 H 1.08993 * 109.50343 * 179.11907 * 8 7 6 30 30 H 1.08990 * 109.52445 * 62.25232 * 9 8 7 31 31 H 0.97002 * 119.99219 * 180.02562 * 13 12 10 32 32 H 1.08994 * 109.50912 * 297.71973 * 18 9 8 33 33 H 1.09001 * 109.50338 * 177.59472 * 18 9 8 34 34 H 1.08998 * 109.46536 * 305.85873 * 19 6 5 35 35 H 1.09007 * 109.46164 * 65.83683 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1358 0.0000 4 17 3.8989 1.1358 -0.0007 5 6 2.2605 -1.3052 -0.0006 6 7 2.4008 -1.7902 1.3790 7 6 3.2506 -0.8904 2.1692 8 6 3.2562 -1.3446 3.6307 9 6 3.7852 -2.7792 3.7121 10 6 3.7381 -3.2542 5.1415 11 1 3.1447 -4.1175 5.4044 12 6 4.4527 -2.5869 6.1136 13 7 4.4119 -3.0018 7.3611 14 14 5.4787 -1.0936 5.6590 15 1 4.6488 0.1322 5.7785 16 1 6.6425 -0.9947 6.5762 17 1 5.9604 -1.2308 4.2611 18 6 2.9116 -3.6872 2.8422 19 6 2.9159 -3.1650 1.4036 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6229 2.0712 -0.0045 24 1 1.7131 -2.0405 -0.5904 25 1 3.2488 -1.1540 -0.4348 26 1 4.2675 -0.9142 1.7776 27 1 2.8610 0.1256 2.1063 28 1 2.2415 -1.3078 4.0270 29 1 3.8995 -0.6858 4.2140 30 1 4.8135 -2.8093 3.3520 31 1 4.9144 -2.5320 8.0450 32 1 1.8915 -3.6873 3.2261 33 1 3.3087 -4.7021 2.8621 34 1 2.2834 -3.8011 0.7845 35 1 3.9346 -3.1782 1.0157 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397210123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:00 Heat of formation + Delta-G solvation = -14.106189 kcal Electronic energy + Delta-G solvation = -16170.350322 eV Core-core repulsion = 13614.363303 eV Total energy + Delta-G solvation = -2555.987019 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.23370 -37.91297 -36.51081 -34.91337 -33.19363 -31.71707 -28.69920 -27.93221 -25.86163 -24.07242 -22.94787 -20.49416 -19.57540 -18.82959 -17.34916 -16.60815 -16.30326 -16.09152 -15.49509 -15.17846 -14.85360 -14.52484 -14.14331 -13.97520 -13.50863 -13.23788 -12.99139 -12.95221 -12.67750 -12.56946 -12.36683 -12.18502 -11.97701 -11.70591 -11.54804 -11.38495 -10.97308 -10.81463 -10.61070 -9.80922 -9.17383 -8.30951 -6.32994 0.89865 1.27014 1.31608 1.41961 1.46960 2.30218 3.04536 3.08689 3.76270 4.02346 4.10937 4.17189 4.27762 4.39596 4.55930 4.62549 4.69861 4.70749 4.73091 4.83320 4.91314 4.94271 4.97855 5.04692 5.18522 5.26269 5.35758 5.52661 5.58924 5.67217 5.77129 6.14890 6.22878 6.32730 6.74026 7.32113 8.86165 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.028201 B = 0.007646 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.623573 B = 3661.127134 C = 4199.947568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C -0.126 4.126 4 Cl -0.114 7.114 5 C 0.075 3.925 6 N -0.531 5.531 7 C 0.069 3.931 8 C -0.114 4.114 9 C 0.011 3.989 10 C -0.514 4.514 11 H 0.035 0.965 12 C 0.013 3.987 13 N -0.950 5.950 14 Si 0.946 3.054 15 H -0.266 1.266 16 H -0.297 1.297 17 H -0.254 1.254 18 C -0.091 4.091 19 C 0.064 3.936 20 H 0.091 0.909 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.169 0.831 24 H 0.101 0.899 25 H 0.043 0.957 26 H 0.022 0.978 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.033 0.967 30 H 0.013 0.987 31 H 0.265 0.735 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 8.556 -19.377 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 C -0.171 4.171 4 Cl -0.086 7.086 5 C -0.052 4.052 6 N -0.256 5.256 7 C -0.059 4.059 8 C -0.151 4.151 9 C -0.008 4.008 10 C -0.552 4.552 11 H 0.053 0.947 12 C -0.184 4.184 13 N -0.591 5.591 14 Si 0.774 3.226 15 H -0.192 1.192 16 H -0.225 1.225 17 H -0.178 1.178 18 C -0.129 4.129 19 C -0.063 4.063 20 H 0.110 0.890 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.186 0.814 24 H 0.119 0.881 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.369 8.560 -19.004 21.794 hybrid contribution 1.623 0.461 0.381 1.729 sum -4.747 9.021 -18.623 21.230 Atomic orbital electron populations 1.20766 0.88262 1.03701 1.03421 1.22056 0.97895 0.93492 0.96388 1.24622 0.82889 1.00874 1.08689 1.98357 1.14625 1.98841 1.96774 1.21295 0.99005 0.95240 0.89664 1.61918 1.50357 1.02163 1.11178 1.22105 0.94219 0.96613 0.92985 1.21879 1.00458 0.97670 0.95131 1.19154 0.94867 0.92874 0.93871 1.21415 1.27839 1.13084 0.92889 0.94677 1.25836 0.97593 1.00326 0.94654 1.70053 1.44147 1.42791 1.02111 0.85878 0.78072 0.80263 0.78418 1.19235 1.22520 1.17844 1.21388 0.99615 0.98087 0.93844 1.22112 0.98023 0.89136 0.97022 0.89034 0.91011 0.90753 0.81378 0.88110 0.93905 0.96014 0.90469 0.92549 0.94857 0.96923 0.92633 0.92756 0.92391 0.88588 0.95460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 10.03 71.24 0.71 -0.87 16 2 C -0.10 -1.95 4.96 -16.64 -0.08 -2.03 16 3 C -0.13 -2.52 9.34 67.63 0.63 -1.89 16 4 Cl -0.11 -2.80 24.68 -2.72 -0.07 -2.86 16 5 C 0.07 1.76 4.92 85.56 0.42 2.18 16 6 N -0.53 -16.25 4.65 -900.91 -4.19 -20.43 16 7 C 0.07 2.43 4.09 86.33 0.35 2.78 16 8 C -0.11 -4.99 4.84 30.65 0.15 -4.84 16 9 C 0.01 0.54 1.75 -11.46 -0.02 0.52 16 10 C -0.51 -30.16 9.15 25.60 0.23 -29.92 16 11 H 0.03 2.26 7.99 -2.91 -0.02 2.23 16 12 C 0.01 0.75 5.45 84.65 0.46 1.22 16 13 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 14 Si 0.95 47.00 24.36 68.60 1.67 48.67 16 15 H -0.27 -12.62 6.89 99.48 0.69 -11.93 16 16 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 17 H -0.25 -11.97 6.53 99.48 0.65 -11.32 16 18 C -0.09 -3.62 5.32 30.65 0.16 -3.46 16 19 C 0.06 2.00 5.46 86.33 0.47 2.47 16 20 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 21 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 22 H 0.07 1.01 8.06 -2.39 -0.02 0.99 16 23 H 0.17 2.50 8.04 -2.91 -0.02 2.48 16 24 H 0.10 1.96 7.99 -2.39 -0.02 1.94 16 25 H 0.04 1.07 6.51 -2.38 -0.02 1.05 16 26 H 0.02 0.80 7.68 -2.39 -0.02 0.78 16 27 H 0.08 2.54 5.52 -2.39 -0.01 2.53 16 28 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.03 1.54 3.38 -2.39 -0.01 1.53 16 30 H 0.01 0.63 7.19 -2.39 -0.02 0.61 16 31 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 32 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 34 H 0.10 2.40 8.02 -2.39 -0.02 2.38 16 35 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -66.75 281.02 2.19 -64.55 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 0.98 Total: 4.51 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 3.50 Total: -33.85 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -3.89 Total: -81.02 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.67 Total: 48.67 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.07 Total: -2.86 kcal Total: -66.75 2.19 -64.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397210123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.448 kcal (2) G-P(sol) polarization free energy of solvation -66.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds