Wall clock time and date at job start Mon Mar 30 2020 05:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31156 * 120.00236 * 2 1 4 4 Cl 1.73601 * 120.00284 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99695 * 180.02562 * 2 1 3 6 6 N 1.46904 * 109.47080 * 274.99563 * 5 2 1 7 7 C 1.46844 * 110.99639 * 66.04839 * 6 5 2 8 8 C 1.53038 * 109.52399 * 185.84012 * 7 6 5 9 9 C 1.53125 * 109.27667 * 300.82292 * 8 7 6 10 10 C 1.53116 * 109.16185 * 57.65220 * 9 8 7 11 11 H 1.08999 * 109.50591 * 62.32528 * 10 9 8 12 12 C 1.50700 * 109.50506 * 182.40318 * 10 9 8 13 13 H 1.07998 * 119.99767 * 120.00052 * 12 10 9 14 14 C 1.37870 * 120.00095 * 300.00546 * 12 10 9 15 15 N 1.31518 * 120.00159 * 180.02562 * 14 12 10 16 16 Si 1.86804 * 120.00010 * 359.97438 * 14 12 10 17 17 H 1.48499 * 109.47106 * 90.00438 * 16 14 12 18 18 H 1.48505 * 109.47040 * 210.00480 * 16 14 12 19 19 H 1.48502 * 109.47203 * 330.00296 * 16 14 12 20 20 C 1.46845 * 111.00182 * 190.26124 * 6 5 2 21 21 H 1.09002 * 109.47152 * 269.99698 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.99799 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.99779 * 1 2 3 24 24 H 1.08006 * 119.99605 * 0.02562 * 3 2 1 25 25 H 1.08999 * 109.47609 * 34.99909 * 5 2 1 26 26 H 1.09006 * 109.47060 * 155.00392 * 5 2 1 27 27 H 1.08996 * 109.46476 * 305.85535 * 7 6 5 28 28 H 1.09005 * 109.46409 * 65.82480 * 7 6 5 29 29 H 1.08996 * 109.50695 * 60.75898 * 8 7 6 30 30 H 1.08993 * 109.50526 * 180.88422 * 8 7 6 31 31 H 1.09004 * 109.52256 * 177.55769 * 9 8 7 32 32 H 1.09002 * 109.52416 * 297.68469 * 9 8 7 33 33 H 0.96997 * 120.00433 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.45714 * 294.17896 * 20 6 5 35 35 H 1.09002 * 109.46387 * 54.14332 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1358 0.0000 4 17 3.8989 1.1358 0.0007 5 6 2.2605 -1.3051 -0.0006 6 7 2.4008 -1.7901 1.3790 7 6 1.0938 -2.1415 1.9487 8 6 1.2604 -2.5023 3.4266 9 6 2.2273 -3.6830 3.5528 10 6 3.5650 -3.3082 2.9089 11 1 4.0017 -2.4638 3.4422 12 6 4.5032 -4.4855 2.9764 13 1 4.8968 -4.9151 2.0670 14 6 4.8591 -5.0143 4.1989 15 7 5.6784 -6.0414 4.2578 16 14 4.1788 -4.2708 5.7718 17 1 2.9060 -4.9474 6.1289 18 1 5.1612 -4.4526 6.8705 19 1 3.9284 -2.8216 5.5664 20 6 3.3316 -2.9240 1.4461 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 -0.8900 -0.5139 23 1 -0.3633 0.8900 -0.5138 24 1 1.6228 2.0712 0.0004 25 1 1.7131 -2.0405 -0.5903 26 1 3.2488 -1.1539 -0.4348 27 1 0.4171 -1.2921 1.8563 28 1 0.6807 -2.9949 1.4109 29 1 1.6606 -1.6449 3.9677 30 1 0.2926 -2.7782 3.8452 31 1 2.3826 -3.9155 4.6064 32 1 1.8088 -4.5524 3.0457 33 1 5.9290 -6.4132 5.1179 34 1 2.9080 -3.7736 0.9106 35 1 4.2801 -2.6428 0.9886 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397704287.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:07 Heat of formation + Delta-G solvation = 6.260876 kcal Electronic energy + Delta-G solvation = -16072.310048 eV Core-core repulsion = 13517.206211 eV Total energy + Delta-G solvation = -2555.103837 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.79504 -36.73244 -35.26260 -33.00301 -31.73423 -30.26286 -27.46089 -26.11498 -24.83582 -22.38948 -21.20859 -18.88526 -18.54317 -16.69895 -15.76056 -15.63201 -15.09180 -14.38731 -13.80365 -13.57849 -13.32211 -13.16694 -12.81518 -12.29871 -12.25315 -12.18264 -11.91224 -11.62789 -11.28176 -11.01620 -10.96525 -10.48110 -10.32525 -10.02173 -9.92637 -9.65501 -9.14176 -8.91299 -8.71195 -8.47867 -7.77704 -6.03635 -4.02446 1.87678 2.50956 3.30893 3.42413 3.46397 4.45818 4.46822 4.73806 4.94071 5.27001 5.29809 5.35921 5.46231 5.53247 5.64117 5.71513 5.76498 5.91466 6.05031 6.18585 6.22505 6.32166 6.35442 6.45679 6.54381 6.64894 6.83838 6.87454 7.24156 7.44353 7.62768 7.70102 7.90442 8.55884 8.99698 9.59429 11.09683 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.030549 B = 0.006769 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.340741 B = 4135.678389 C = 4523.050750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.104 4.104 3 C -0.105 4.105 4 Cl -0.087 7.087 5 C 0.081 3.919 6 N -0.530 5.530 7 C 0.055 3.945 8 C -0.119 4.119 9 C -0.122 4.122 10 C 0.021 3.979 11 H 0.036 0.964 12 C -0.513 4.513 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.903 5.903 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.299 1.299 19 H -0.263 1.263 20 C 0.078 3.922 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.141 0.859 25 H 0.036 0.964 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.263 0.737 34 H 0.025 0.975 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 13.040 -7.839 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.106 4.106 3 C -0.151 4.151 4 Cl -0.058 7.058 5 C -0.047 4.047 6 N -0.254 5.254 7 C -0.072 4.072 8 C -0.157 4.157 9 C -0.160 4.160 10 C 0.002 3.998 11 H 0.054 0.946 12 C -0.551 4.551 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.542 5.542 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.227 1.227 19 H -0.188 1.188 20 C -0.048 4.048 21 H 0.096 0.904 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.158 0.842 25 H 0.054 0.946 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.630 13.278 -7.449 18.569 hybrid contribution -0.595 -0.435 0.491 0.885 sum -11.225 12.843 -6.958 18.422 Atomic orbital electron populations 1.20933 0.90907 1.02648 1.02679 1.21841 0.95895 0.95019 0.97802 1.24107 0.84514 0.99113 1.07361 1.98361 1.11988 1.98783 1.96677 1.21207 0.99971 0.92368 0.91138 1.62026 1.10587 1.36384 1.16438 1.22199 0.90734 0.98519 0.95780 1.21651 0.99020 0.99788 0.95274 1.22024 0.97434 0.96368 1.00151 1.19147 0.92418 0.97063 0.91181 0.94629 1.21009 1.26449 1.13302 0.94376 0.90981 1.24978 0.94622 0.94537 0.98968 1.69901 1.34909 1.23903 1.25444 0.86828 0.77653 0.80683 0.83005 1.20792 1.22652 1.18780 1.22089 0.94253 0.88927 0.99556 0.90388 0.91283 0.91705 0.84173 0.94580 0.89425 0.91296 0.95568 0.91878 0.92932 0.93618 0.92624 0.92732 0.95625 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 8.92 36.01 0.32 -0.73 16 2 C -0.10 -1.24 5.12 -101.11 -0.52 -1.76 16 3 C -0.11 -1.22 10.41 28.97 0.30 -0.92 16 4 Cl -0.09 -1.17 27.15 -51.86 -1.41 -2.58 16 5 C 0.08 1.17 4.79 -4.97 -0.02 1.15 16 6 N -0.53 -9.21 4.65 -236.11 -1.10 -10.31 16 7 C 0.06 0.88 5.16 -3.83 -0.02 0.86 16 8 C -0.12 -2.12 6.09 -26.65 -0.16 -2.29 16 9 C -0.12 -2.67 4.73 -26.61 -0.13 -2.80 16 10 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 11 H 0.04 0.91 7.21 -51.93 -0.37 0.53 16 12 C -0.51 -14.54 9.15 -34.44 -0.31 -14.85 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 15 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 16 Si 0.89 22.45 24.35 -169.99 -4.14 18.31 16 17 H -0.28 -6.90 6.89 56.52 0.39 -6.51 16 18 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 19 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 20 C 0.08 1.61 4.68 -3.84 -0.02 1.60 16 21 H 0.08 0.71 6.47 -51.93 -0.34 0.38 16 22 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 23 H 0.06 0.47 8.06 -51.93 -0.42 0.05 16 24 H 0.14 1.26 8.04 -52.48 -0.42 0.84 16 25 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.09 1.32 6.37 -51.93 -0.33 0.99 16 27 H 0.07 0.93 4.65 -51.93 -0.24 0.69 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 1.06 3.34 -51.93 -0.17 0.89 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 1.41 8.01 -51.93 -0.42 0.99 16 LS Contribution 282.31 15.07 4.25 4.25 Total: -1.00 -30.29 282.31 -7.71 -37.99 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.26 Total: -3.03 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -0.83 Total: -17.45 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.32 Total: -37.50 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.41 Total: -2.58 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.29 -7.71 -37.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397704287.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.253 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds