Wall clock time and date at job start Mon Mar 30 2020 05:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31156 * 120.00236 * 2 1 4 4 Cl 1.73601 * 120.00284 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99695 * 180.02562 * 2 1 3 6 6 N 1.46904 * 109.47080 * 274.99563 * 5 2 1 7 7 C 1.46844 * 110.99639 * 66.04839 * 6 5 2 8 8 C 1.53038 * 109.52399 * 185.84012 * 7 6 5 9 9 C 1.53125 * 109.27667 * 300.82292 * 8 7 6 10 10 C 1.53116 * 109.16185 * 57.65220 * 9 8 7 11 11 H 1.08999 * 109.50591 * 62.32528 * 10 9 8 12 12 C 1.50700 * 109.50506 * 182.40318 * 10 9 8 13 13 H 1.07998 * 119.99767 * 120.00052 * 12 10 9 14 14 C 1.37870 * 120.00095 * 300.00546 * 12 10 9 15 15 N 1.31518 * 120.00159 * 180.02562 * 14 12 10 16 16 Si 1.86804 * 120.00010 * 359.97438 * 14 12 10 17 17 H 1.48499 * 109.47106 * 90.00438 * 16 14 12 18 18 H 1.48505 * 109.47040 * 210.00480 * 16 14 12 19 19 H 1.48502 * 109.47203 * 330.00296 * 16 14 12 20 20 C 1.46845 * 111.00182 * 190.26124 * 6 5 2 21 21 H 1.09002 * 109.47152 * 269.99698 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.99799 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.99779 * 1 2 3 24 24 H 1.08006 * 119.99605 * 0.02562 * 3 2 1 25 25 H 1.08999 * 109.47609 * 34.99909 * 5 2 1 26 26 H 1.09006 * 109.47060 * 155.00392 * 5 2 1 27 27 H 1.08996 * 109.46476 * 305.85535 * 7 6 5 28 28 H 1.09005 * 109.46409 * 65.82480 * 7 6 5 29 29 H 1.08996 * 109.50695 * 60.75898 * 8 7 6 30 30 H 1.08993 * 109.50526 * 180.88422 * 8 7 6 31 31 H 1.09004 * 109.52256 * 177.55769 * 9 8 7 32 32 H 1.09002 * 109.52416 * 297.68469 * 9 8 7 33 33 H 0.96997 * 120.00433 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.45714 * 294.17896 * 20 6 5 35 35 H 1.09002 * 109.46387 * 54.14332 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1358 0.0000 4 17 3.8989 1.1358 0.0007 5 6 2.2605 -1.3051 -0.0006 6 7 2.4008 -1.7901 1.3790 7 6 1.0938 -2.1415 1.9487 8 6 1.2604 -2.5023 3.4266 9 6 2.2273 -3.6830 3.5528 10 6 3.5650 -3.3082 2.9089 11 1 4.0017 -2.4638 3.4422 12 6 4.5032 -4.4855 2.9764 13 1 4.8968 -4.9151 2.0670 14 6 4.8591 -5.0143 4.1989 15 7 5.6784 -6.0414 4.2578 16 14 4.1788 -4.2708 5.7718 17 1 2.9060 -4.9474 6.1289 18 1 5.1612 -4.4526 6.8705 19 1 3.9284 -2.8216 5.5664 20 6 3.3316 -2.9240 1.4461 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 -0.8900 -0.5139 23 1 -0.3633 0.8900 -0.5138 24 1 1.6228 2.0712 0.0004 25 1 1.7131 -2.0405 -0.5903 26 1 3.2488 -1.1539 -0.4348 27 1 0.4171 -1.2921 1.8563 28 1 0.6807 -2.9949 1.4109 29 1 1.6606 -1.6449 3.9677 30 1 0.2926 -2.7782 3.8452 31 1 2.3826 -3.9155 4.6064 32 1 1.8088 -4.5524 3.0457 33 1 5.9290 -6.4132 5.1179 34 1 2.9080 -3.7736 0.9106 35 1 4.2801 -2.6428 0.9886 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397704287.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:07 Heat of formation + Delta-G solvation = -13.592644 kcal Electronic energy + Delta-G solvation = -16073.170961 eV Core-core repulsion = 13517.206211 eV Total energy + Delta-G solvation = -2555.964750 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19286 -37.82539 -36.46063 -34.80197 -33.29647 -32.01404 -28.31870 -27.42448 -26.68301 -23.86689 -22.88712 -20.48361 -19.58139 -18.81672 -17.26933 -16.64477 -16.26777 -16.13535 -15.31240 -15.06020 -14.86295 -14.65296 -14.18920 -13.91074 -13.59462 -13.07775 -13.00562 -12.89134 -12.83877 -12.48175 -12.41259 -12.12542 -11.86465 -11.73995 -11.44811 -11.33879 -11.01549 -10.77830 -10.62127 -9.70370 -9.15165 -8.31093 -6.34538 0.96575 1.28603 1.35768 1.47035 1.60373 2.32286 3.04781 3.16081 3.78719 3.99868 4.07325 4.15958 4.27334 4.43927 4.46899 4.59913 4.66505 4.70555 4.79926 4.83088 4.87198 4.96350 5.01892 5.11971 5.16663 5.25405 5.36889 5.45104 5.61762 5.64233 5.73657 6.16463 6.26594 6.36193 6.72831 7.31144 8.85888 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.030549 B = 0.006769 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.340741 B = 4135.678389 C = 4523.050750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.110 4.110 3 C -0.103 4.103 4 Cl -0.113 7.113 5 C 0.079 3.921 6 N -0.536 5.536 7 C 0.055 3.945 8 C -0.114 4.114 9 C -0.122 4.122 10 C 0.022 3.978 11 H 0.022 0.978 12 C -0.520 4.520 13 H 0.031 0.969 14 C 0.013 3.987 15 N -0.951 5.951 16 Si 0.952 3.048 17 H -0.265 1.265 18 H -0.299 1.299 19 H -0.250 1.250 20 C 0.091 3.909 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.172 0.828 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.265 0.735 34 H 0.017 0.983 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.080 15.240 -7.516 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.111 4.111 3 C -0.148 4.148 4 Cl -0.084 7.084 5 C -0.048 4.048 6 N -0.260 5.260 7 C -0.072 4.072 8 C -0.152 4.152 9 C -0.160 4.160 10 C 0.003 3.997 11 H 0.040 0.960 12 C -0.558 4.558 13 H 0.050 0.950 14 C -0.184 4.184 15 N -0.591 5.591 16 Si 0.779 3.221 17 H -0.191 1.191 18 H -0.227 1.227 19 H -0.174 1.174 20 C -0.037 4.037 21 H 0.102 0.898 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.189 0.811 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.651 15.496 -7.148 21.853 hybrid contribution 0.383 -1.145 0.271 1.238 sum -13.268 14.350 -6.877 20.718 Atomic orbital electron populations 1.20965 0.88313 1.04153 1.03382 1.21922 0.97463 0.93397 0.98340 1.24562 0.83117 1.00475 1.06651 1.98366 1.14473 1.98844 1.96744 1.21229 1.00120 0.94081 0.89411 1.61965 1.11063 1.34379 1.18607 1.22311 0.90300 1.00159 0.94430 1.21637 0.99224 0.97544 0.96808 1.21918 0.97052 0.98198 0.98802 1.19038 0.92732 0.94395 0.93530 0.96024 1.21345 1.27060 1.14464 0.92972 0.95034 1.25845 0.94954 0.94913 1.02687 1.70049 1.36821 1.25782 1.26471 0.85783 0.77382 0.80568 0.78330 1.19097 1.22727 1.17360 1.21749 0.94837 0.90059 0.97058 0.89821 0.90823 0.89336 0.81060 0.93845 0.90723 0.87847 0.95202 0.92085 0.89745 0.94792 0.93256 0.92563 0.96503 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 8.92 71.24 0.64 -0.88 16 2 C -0.11 -2.25 5.12 -16.64 -0.09 -2.33 16 3 C -0.10 -2.07 10.41 67.62 0.70 -1.37 16 4 Cl -0.11 -2.92 27.15 -2.72 -0.07 -2.99 16 5 C 0.08 2.14 4.79 85.56 0.41 2.55 16 6 N -0.54 -17.69 4.65 -900.92 -4.19 -21.88 16 7 C 0.06 1.57 5.16 86.33 0.45 2.01 16 8 C -0.11 -3.67 6.09 30.65 0.19 -3.48 16 9 C -0.12 -5.15 4.73 30.67 0.15 -5.01 16 10 C 0.02 1.07 1.85 -11.49 -0.02 1.05 16 11 H 0.02 1.10 7.21 -2.39 -0.02 1.08 16 12 C -0.52 -30.58 9.15 25.60 0.23 -30.34 16 13 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 14 C 0.01 0.77 5.45 84.65 0.46 1.23 16 15 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 16 Si 0.95 46.54 24.35 68.60 1.67 48.21 16 17 H -0.26 -12.21 6.89 99.48 0.69 -11.52 16 18 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 19 H -0.25 -11.54 6.53 99.48 0.65 -10.89 16 20 C 0.09 3.77 4.68 86.33 0.40 4.17 16 21 H 0.08 1.08 6.47 -2.39 -0.02 1.06 16 22 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 23 H 0.09 0.82 8.06 -2.38 -0.02 0.80 16 24 H 0.17 2.35 8.04 -2.91 -0.02 2.32 16 25 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 26 H 0.07 2.21 6.37 -2.38 -0.02 2.20 16 27 H 0.10 2.28 4.65 -2.39 -0.01 2.27 16 28 H 0.03 0.84 8.14 -2.38 -0.02 0.83 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.03 1.50 3.34 -2.38 -0.01 1.49 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 2.29 8.01 -2.39 -0.02 2.27 16 Total: -1.00 -67.62 282.31 2.21 -65.41 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 0.98 Total: 4.19 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 3.52 Total: -32.40 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -3.89 Total: -82.42 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.67 Total: 48.21 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -0.07 Total: -2.99 kcal Total: -67.62 2.21 -65.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397704287.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.816 kcal (2) G-P(sol) polarization free energy of solvation -67.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds