Wall clock time and date at job start Mon Mar 30 2020 05:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31168 * 119.99890 * 2 1 4 4 Cl 1.73599 * 120.00123 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00432 * 179.97438 * 2 1 3 6 6 N 1.46899 * 109.47405 * 275.00319 * 5 2 1 7 7 C 1.46851 * 110.99832 * 294.20558 * 6 5 2 8 8 C 1.53030 * 109.52329 * 174.15490 * 7 6 5 9 9 C 1.53124 * 109.27345 * 59.18327 * 8 7 6 10 10 C 1.53116 * 109.16037 * 302.34054 * 9 8 7 11 11 H 1.08999 * 109.53562 * 297.69188 * 10 9 8 12 12 C 1.50708 * 109.50221 * 177.59794 * 10 9 8 13 13 H 1.07991 * 119.99789 * 240.20254 * 12 10 9 14 14 C 1.37877 * 120.00008 * 60.19565 * 12 10 9 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.46844 * 111.00250 * 169.99638 * 6 5 2 21 21 H 1.09004 * 109.46972 * 270.00060 * 1 2 3 22 22 H 1.08996 * 109.47381 * 30.00021 * 1 2 3 23 23 H 1.08995 * 109.46806 * 150.00030 * 1 2 3 24 24 H 1.08003 * 119.99649 * 359.97438 * 3 2 1 25 25 H 1.08994 * 109.47440 * 154.99946 * 5 2 1 26 26 H 1.09002 * 109.47192 * 35.00022 * 5 2 1 27 27 H 1.08995 * 109.46097 * 294.17777 * 7 6 5 28 28 H 1.09003 * 109.45757 * 54.14539 * 7 6 5 29 29 H 1.09002 * 109.50350 * 179.11638 * 8 7 6 30 30 H 1.08997 * 109.51122 * 299.24046 * 8 7 6 31 31 H 1.09006 * 109.52113 * 182.43809 * 9 8 7 32 32 H 1.08998 * 109.52352 * 62.25590 * 9 8 7 33 33 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.45954 * 65.82277 * 20 6 5 35 35 H 1.09001 * 109.46192 * 305.85421 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1360 0.0000 4 17 3.8988 1.1360 -0.0007 5 6 2.2606 -1.3050 0.0006 6 7 2.4009 -1.7889 1.3805 7 6 3.2507 -0.8884 2.1700 8 6 3.2563 -1.3413 3.6318 9 6 3.7854 -2.7758 3.7144 10 6 2.9118 -3.6846 2.8452 11 1 1.8916 -3.6851 3.2290 12 6 3.4609 -5.0878 2.8741 13 1 3.7812 -5.5611 1.9578 14 6 3.5545 -5.7670 4.0703 15 7 4.0341 -6.9913 4.0955 16 14 2.9999 -4.9483 5.6550 17 1 4.1434 -4.2220 6.2635 18 1 2.5105 -5.9826 6.6016 19 1 1.9050 -3.9894 5.3601 20 6 2.9162 -3.1637 1.4063 21 1 -0.3633 0.0000 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6227 2.0713 -0.0004 25 1 3.2488 -1.1542 -0.4338 26 1 1.7133 -2.0409 -0.5885 27 1 4.2676 -0.9125 1.7784 28 1 2.8610 0.1276 2.1061 29 1 3.8996 -0.6821 4.2146 30 1 2.2416 -1.3043 4.0282 31 1 3.7505 -3.1179 4.7488 32 1 4.8138 -2.8061 3.3544 33 1 4.0995 -7.4693 4.9370 34 1 3.9347 -3.1771 1.0182 35 1 2.2836 -3.8003 0.7877 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397704290.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:10 Heat of formation + Delta-G solvation = 5.208130 kcal Electronic energy + Delta-G solvation = -16126.781914 eV Core-core repulsion = 13571.632427 eV Total energy + Delta-G solvation = -2555.149487 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.81628 -36.80787 -35.30273 -33.04620 -31.70168 -30.23887 -27.23530 -26.25257 -24.86556 -22.39022 -21.21526 -18.86754 -18.56045 -16.70480 -15.76281 -15.51907 -15.13796 -14.28345 -14.09450 -13.63263 -13.14175 -13.06771 -12.86084 -12.34791 -12.20847 -12.10116 -12.04562 -11.54650 -11.25998 -11.03567 -10.91381 -10.61534 -10.42597 -10.02651 -9.92354 -9.65266 -9.11404 -8.91085 -8.83086 -8.48559 -7.75471 -6.04457 -4.03351 1.81147 2.36548 3.30999 3.41707 3.45467 4.45123 4.46543 4.73406 4.93264 5.27533 5.38868 5.52918 5.54001 5.59565 5.68728 5.75361 5.85623 5.93821 6.08907 6.17771 6.21638 6.33224 6.38029 6.44522 6.54863 6.65354 6.84690 6.88760 7.23308 7.44369 7.61822 7.68225 7.89644 8.54974 8.98821 9.58593 11.08837 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.037192 B = 0.006384 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.677895 B = 4385.187780 C = 4501.355698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.085 4.085 3 C -0.129 4.129 4 Cl -0.095 7.095 5 C 0.076 3.924 6 N -0.533 5.533 7 C 0.062 3.938 8 C -0.120 4.120 9 C -0.122 4.122 10 C 0.021 3.979 11 H 0.035 0.965 12 C -0.513 4.513 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.903 5.903 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.299 1.299 19 H -0.263 1.263 20 C 0.077 3.923 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.144 0.856 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.030 0.970 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.263 0.737 34 H 0.026 0.974 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 16.496 -7.204 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.087 4.087 3 C -0.174 4.174 4 Cl -0.067 7.067 5 C -0.052 4.052 6 N -0.258 5.258 7 C -0.066 4.066 8 C -0.158 4.158 9 C -0.160 4.160 10 C 0.002 3.998 11 H 0.053 0.947 12 C -0.552 4.552 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.541 5.541 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.226 1.226 19 H -0.188 1.188 20 C -0.049 4.049 21 H 0.097 0.903 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.161 0.839 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.221 16.320 -6.887 18.467 hybrid contribution 0.771 0.364 0.618 1.053 sum -4.449 16.685 -6.269 18.371 Atomic orbital electron populations 1.20741 0.90150 1.02442 1.03086 1.21967 0.96689 0.94498 0.95501 1.24196 0.83902 0.99578 1.09768 1.98349 1.12770 1.98796 1.96778 1.21231 0.98564 0.93481 0.91922 1.62042 1.51120 1.03450 1.09140 1.22137 0.94632 0.95820 0.94024 1.21669 1.01059 0.97866 0.95204 1.22022 1.00385 0.93492 1.00065 1.19151 0.96063 0.94171 0.90412 0.94670 1.21009 1.42076 0.96676 0.95422 0.90973 1.24979 0.94520 0.94636 0.98967 1.69901 1.46157 1.11355 1.26721 0.86826 0.79496 0.78454 0.83380 1.20756 1.22649 1.18809 1.22100 0.96943 0.85926 0.99947 0.90253 0.92021 0.90930 0.83894 0.93450 0.90063 0.95166 0.91623 0.92930 0.92008 0.93629 0.92614 0.92721 0.95531 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.03 36.01 0.36 -0.67 16 2 C -0.08 -1.01 4.97 -101.11 -0.50 -1.51 16 3 C -0.13 -1.43 9.34 28.97 0.27 -1.16 16 4 Cl -0.10 -1.19 24.68 -51.86 -1.28 -2.47 16 5 C 0.08 1.09 4.93 -4.98 -0.02 1.06 16 6 N -0.53 -9.28 4.65 -236.12 -1.10 -10.38 16 7 C 0.06 1.04 4.09 -3.84 -0.02 1.03 16 8 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 9 C -0.12 -2.70 4.74 -26.61 -0.13 -2.83 16 10 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 11 H 0.04 0.88 7.19 -51.93 -0.37 0.51 16 12 C -0.51 -14.48 9.14 -34.44 -0.31 -14.80 16 13 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 14 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 15 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 16 Si 0.89 22.37 24.36 -169.99 -4.14 18.23 16 17 H -0.28 -6.91 6.89 56.52 0.39 -6.52 16 18 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 19 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 20 C 0.08 1.58 4.68 -3.84 -0.02 1.57 16 21 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.47 8.06 -51.93 -0.42 0.05 16 23 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 24 H 0.14 1.24 8.04 -52.48 -0.42 0.82 16 25 H 0.05 0.70 6.51 -51.93 -0.34 0.36 16 26 H 0.08 1.11 7.94 -51.93 -0.41 0.70 16 27 H 0.03 0.53 7.68 -51.93 -0.40 0.13 16 28 H 0.07 1.01 5.52 -51.93 -0.29 0.72 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 1.07 3.37 -51.93 -0.17 0.89 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.35 8.02 -51.93 -0.42 0.93 16 LS Contribution 280.92 15.07 4.23 4.23 Total: -1.00 -29.94 280.92 -7.68 -37.62 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.37 Total: -2.74 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.80 Total: -17.40 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.32 Total: -37.47 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.28 Total: -2.47 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.94 -7.68 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397704290.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.827 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds