Wall clock time and date at job start Mon Mar 30 2020 05:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.31168 * 119.99890 * 2 1 4 4 Cl 1.73599 * 120.00123 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00432 * 179.97438 * 2 1 3 6 6 N 1.46899 * 109.47405 * 275.00319 * 5 2 1 7 7 C 1.46851 * 110.99832 * 294.20558 * 6 5 2 8 8 C 1.53030 * 109.52329 * 174.15490 * 7 6 5 9 9 C 1.53124 * 109.27345 * 59.18327 * 8 7 6 10 10 C 1.53116 * 109.16037 * 302.34054 * 9 8 7 11 11 H 1.08999 * 109.53562 * 297.69188 * 10 9 8 12 12 C 1.50708 * 109.50221 * 177.59794 * 10 9 8 13 13 H 1.07991 * 119.99789 * 240.20254 * 12 10 9 14 14 C 1.37877 * 120.00008 * 60.19565 * 12 10 9 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.46844 * 111.00250 * 169.99638 * 6 5 2 21 21 H 1.09004 * 109.46972 * 270.00060 * 1 2 3 22 22 H 1.08996 * 109.47381 * 30.00021 * 1 2 3 23 23 H 1.08995 * 109.46806 * 150.00030 * 1 2 3 24 24 H 1.08003 * 119.99649 * 359.97438 * 3 2 1 25 25 H 1.08994 * 109.47440 * 154.99946 * 5 2 1 26 26 H 1.09002 * 109.47192 * 35.00022 * 5 2 1 27 27 H 1.08995 * 109.46097 * 294.17777 * 7 6 5 28 28 H 1.09003 * 109.45757 * 54.14539 * 7 6 5 29 29 H 1.09002 * 109.50350 * 179.11638 * 8 7 6 30 30 H 1.08997 * 109.51122 * 299.24046 * 8 7 6 31 31 H 1.09006 * 109.52113 * 182.43809 * 9 8 7 32 32 H 1.08998 * 109.52352 * 62.25590 * 9 8 7 33 33 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.45954 * 65.82277 * 20 6 5 35 35 H 1.09001 * 109.46192 * 305.85421 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1360 0.0000 4 17 3.8988 1.1360 -0.0007 5 6 2.2606 -1.3050 0.0006 6 7 2.4009 -1.7889 1.3805 7 6 3.2507 -0.8884 2.1700 8 6 3.2563 -1.3413 3.6318 9 6 3.7854 -2.7758 3.7144 10 6 2.9118 -3.6846 2.8452 11 1 1.8916 -3.6851 3.2290 12 6 3.4609 -5.0878 2.8741 13 1 3.7812 -5.5611 1.9578 14 6 3.5545 -5.7670 4.0703 15 7 4.0341 -6.9913 4.0955 16 14 2.9999 -4.9483 5.6550 17 1 4.1434 -4.2220 6.2635 18 1 2.5105 -5.9826 6.6016 19 1 1.9050 -3.9894 5.3601 20 6 2.9162 -3.1637 1.4063 21 1 -0.3633 0.0000 1.0277 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6227 2.0713 -0.0004 25 1 3.2488 -1.1542 -0.4338 26 1 1.7133 -2.0409 -0.5885 27 1 4.2676 -0.9125 1.7784 28 1 2.8610 0.1276 2.1061 29 1 3.8996 -0.6821 4.2146 30 1 2.2416 -1.3043 4.0282 31 1 3.7505 -3.1179 4.7488 32 1 4.8138 -2.8061 3.3544 33 1 4.0995 -7.4693 4.9370 34 1 3.9347 -3.1771 1.0182 35 1 2.2836 -3.8003 0.7877 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397704290.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:09 Heat of formation + Delta-G solvation = -14.155027 kcal Electronic energy + Delta-G solvation = -16127.621563 eV Core-core repulsion = 13571.632427 eV Total energy + Delta-G solvation = -2555.989137 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22881 -37.90065 -36.45604 -34.84767 -33.30585 -32.01580 -28.09032 -27.50308 -26.81551 -23.88878 -22.92094 -20.52151 -19.57638 -18.81070 -17.28512 -16.57187 -16.35766 -15.95667 -15.51596 -15.30658 -14.82157 -14.46132 -14.19650 -13.97199 -13.61121 -13.17456 -12.94335 -12.92918 -12.75010 -12.52193 -12.32575 -12.13419 -11.88623 -11.81011 -11.53285 -11.41449 -11.01417 -10.79483 -10.62410 -9.80175 -9.15240 -8.30521 -6.34019 0.90998 1.30191 1.36085 1.47565 1.48845 2.32855 3.05338 3.12675 3.76577 3.99189 4.05325 4.14275 4.25941 4.44568 4.53492 4.63036 4.67636 4.72755 4.80876 4.83756 4.90843 4.96507 5.03772 5.04026 5.14147 5.23315 5.34804 5.43235 5.58698 5.63362 5.72158 6.14060 6.22791 6.34461 6.73201 7.31685 8.86379 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.037192 B = 0.006384 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.677895 B = 4385.187780 C = 4501.355698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.096 4.096 3 C -0.118 4.118 4 Cl -0.111 7.111 5 C 0.073 3.927 6 N -0.533 5.533 7 C 0.066 3.934 8 C -0.115 4.115 9 C -0.122 4.122 10 C 0.022 3.978 11 H 0.028 0.972 12 C -0.519 4.519 13 H 0.032 0.968 14 C 0.013 3.987 15 N -0.950 5.950 16 Si 0.951 3.049 17 H -0.269 1.269 18 H -0.298 1.298 19 H -0.246 1.246 20 C 0.088 3.912 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.174 0.826 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.024 0.976 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.265 0.735 34 H 0.012 0.988 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 19.526 -6.802 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.098 4.098 3 C -0.163 4.163 4 Cl -0.083 7.083 5 C -0.054 4.054 6 N -0.258 5.258 7 C -0.062 4.062 8 C -0.153 4.153 9 C -0.159 4.159 10 C 0.003 3.997 11 H 0.046 0.954 12 C -0.558 4.558 13 H 0.051 0.949 14 C -0.184 4.184 15 N -0.591 5.591 16 Si 0.778 3.222 17 H -0.195 1.195 18 H -0.226 1.226 19 H -0.170 1.170 20 C -0.039 4.039 21 H 0.094 0.906 22 H 0.105 0.895 23 H 0.089 0.911 24 H 0.192 0.808 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.042 0.958 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.523 19.377 -6.507 21.456 hybrid contribution 1.203 -0.614 0.370 1.401 sum -5.319 18.763 -6.137 20.445 Atomic orbital electron populations 1.20752 0.88356 1.03725 1.03179 1.21961 0.97786 0.93146 0.96894 1.24616 0.82970 1.00597 1.08146 1.98358 1.14388 1.98829 1.96731 1.21290 0.98911 0.95197 0.89996 1.62002 1.50565 1.01890 1.11296 1.22145 0.94412 0.96592 0.93025 1.21654 1.01556 0.95478 0.96625 1.21923 0.99556 0.95790 0.98678 1.19053 0.95442 0.92184 0.93015 0.95368 1.21335 1.41469 0.99004 0.93987 0.94919 1.25840 0.94698 0.95107 1.02727 1.70048 1.48085 1.13166 1.27801 0.85801 0.79833 0.77741 0.78828 1.19516 1.22616 1.16978 1.21801 0.96315 0.88167 0.97634 0.90627 0.89472 0.91053 0.80842 0.94017 0.89762 0.95802 0.89360 0.90340 0.91589 0.94616 0.93666 0.92565 0.96926 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.03 71.24 0.71 -0.93 16 2 C -0.10 -1.99 4.97 -16.66 -0.08 -2.07 16 3 C -0.12 -2.19 9.34 67.61 0.63 -1.56 16 4 Cl -0.11 -2.51 24.68 -2.72 -0.07 -2.58 16 5 C 0.07 1.98 4.93 85.56 0.42 2.40 16 6 N -0.53 -17.69 4.65 -900.96 -4.19 -21.88 16 7 C 0.07 2.06 4.09 86.32 0.35 2.42 16 8 C -0.12 -3.90 6.09 30.65 0.19 -3.72 16 9 C -0.12 -5.24 4.74 30.67 0.15 -5.10 16 10 C 0.02 1.06 1.85 -11.49 -0.02 1.04 16 11 H 0.03 1.38 7.19 -2.39 -0.02 1.37 16 12 C -0.52 -30.22 9.14 25.60 0.23 -29.99 16 13 H 0.03 2.09 7.99 -2.92 -0.02 2.07 16 14 C 0.01 0.78 5.45 84.65 0.46 1.24 16 15 N -0.95 -60.43 13.96 21.45 0.30 -60.14 16 16 Si 0.95 46.10 24.36 68.60 1.67 47.77 16 17 H -0.27 -12.47 6.89 99.48 0.69 -11.78 16 18 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 19 H -0.25 -11.14 6.53 99.48 0.65 -10.49 16 20 C 0.09 3.62 4.68 86.33 0.40 4.03 16 21 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.09 0.94 8.06 -2.39 -0.02 0.93 16 23 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 24 H 0.17 2.18 8.04 -2.91 -0.02 2.15 16 25 H 0.04 1.18 6.51 -2.39 -0.02 1.17 16 26 H 0.08 2.20 7.94 -2.39 -0.02 2.18 16 27 H 0.02 0.79 7.68 -2.39 -0.02 0.77 16 28 H 0.09 2.40 5.52 -2.39 -0.01 2.39 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.04 1.60 3.37 -2.38 -0.01 1.59 16 32 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 34 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.06 2.59 8.02 -2.39 -0.02 2.57 16 Total: -1.00 -65.58 280.92 2.14 -63.43 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 0.98 Total: 5.63 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 3.45 Total: -32.24 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -3.89 Total: -82.02 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.67 Total: 47.77 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.07 Total: -2.58 kcal Total: -65.58 2.14 -63.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397704290.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.278 kcal (2) G-P(sol) polarization free energy of solvation -65.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds