Wall clock time and date at job start Mon Mar 30 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48505 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47335 * 300.00277 * 3 2 1 6 6 H 1.48508 * 109.46733 * 59.99953 * 3 2 1 7 7 C 1.39950 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00323 * 197.86570 * 7 2 1 9 9 C 1.41398 * 119.99737 * 17.86893 * 7 2 1 10 10 C 1.40721 * 120.24475 * 24.38136 * 9 7 2 11 11 C 1.37616 * 119.74615 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24699 * 0.27327 * 11 10 9 13 13 C 1.50700 * 119.74858 * 179.70329 * 12 11 10 14 14 N 1.46900 * 109.47178 * 90.00558 * 13 12 11 15 15 C 1.46904 * 111.00447 * 180.02562 * 14 13 12 16 16 C 1.54631 * 111.03099 * 267.02205 * 15 14 13 17 17 C 1.51110 * 104.72388 * 217.33118 * 16 15 14 18 18 C 1.30528 * 111.09832 * 16.43541 * 17 16 15 19 19 C 1.51103 * 111.10794 * 0.02562 * 18 17 16 20 20 C 1.38641 * 120.50217 * 359.44630 * 12 11 10 21 21 C 1.37620 * 120.24415 * 0.55833 * 20 12 11 22 22 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.12500 * 0.02562 * 10 9 7 24 24 H 1.07993 * 119.87882 * 180.02562 * 11 10 9 25 25 H 1.09006 * 109.47321 * 209.99649 * 13 12 11 26 26 H 1.08995 * 109.47321 * 330.00391 * 13 12 11 27 27 H 1.00903 * 111.00083 * 56.03879 * 14 13 12 28 28 H 1.08997 * 110.91029 * 31.02429 * 15 14 13 29 29 H 1.09000 * 110.38985 * 336.13996 * 16 15 14 30 30 H 1.09000 * 110.38791 * 98.52427 * 16 15 14 31 31 H 1.07993 * 124.44662 * 196.46212 * 17 16 15 32 32 H 1.08003 * 124.44420 * 180.02562 * 18 17 16 33 33 H 1.09005 * 110.38430 * 224.74816 * 19 18 17 34 34 H 1.08997 * 110.48272 * 102.42673 * 19 18 17 35 35 H 1.07994 * 119.87821 * 180.25618 * 20 12 11 36 36 H 1.07998 * 120.12492 * 179.70387 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0488 -1.2347 0.2864 9 6 1.3521 -2.4068 -0.3768 10 6 0.2209 -2.3615 -1.2126 11 6 -0.4098 -3.5306 -1.5720 12 6 0.0619 -4.7493 -1.1093 13 6 -0.6414 -6.0222 -1.5045 14 7 -0.0524 -6.5421 -2.7457 15 6 -0.7150 -7.7851 -3.1627 16 6 0.0287 -9.0229 -2.6097 17 6 -0.0599 -10.0497 -3.7147 18 6 -0.3911 -9.4930 -4.8479 19 6 -0.5781 -8.0022 -4.6877 20 6 1.1789 -4.8064 -0.2900 21 6 1.8254 -3.6499 0.0822 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1508 -1.4128 -1.5707 24 1 -1.2778 -3.4983 -2.2137 25 1 -0.5281 -6.7613 -0.7113 26 1 -1.7004 -5.8182 -1.6625 27 1 0.9422 -6.6784 -2.6446 28 1 -1.7618 -7.7888 -2.8589 29 1 1.0703 -8.7783 -2.4012 30 1 -0.4634 -9.3907 -1.7093 31 1 0.1260 -11.1054 -3.5839 32 1 -0.5153 -10.0278 -5.7780 33 1 -1.4831 -7.6758 -5.2001 34 1 0.2893 -7.4656 -5.0720 35 1 1.5401 -5.7616 0.0613 36 1 2.6925 -3.6963 0.7243 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399073542.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:53 Heat of formation + Delta-G solvation = 27.477779 kcal Electronic energy + Delta-G solvation = -16331.678757 eV Core-core repulsion = 13779.927803 eV Total energy + Delta-G solvation = -2551.750953 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.94014 -37.55562 -34.69232 -33.27239 -30.23782 -29.23042 -28.15195 -27.60309 -25.47246 -22.96572 -20.96141 -20.49795 -19.79463 -18.76497 -17.27536 -16.27476 -15.43486 -15.28211 -14.77386 -14.08582 -13.76594 -13.23603 -12.74175 -12.67299 -12.53158 -12.17185 -12.02332 -11.86530 -11.49981 -11.36445 -11.28777 -11.14425 -11.02979 -10.89663 -10.43314 -10.32164 -9.56920 -9.34851 -9.11643 -8.93495 -8.00025 -7.41623 -7.28386 -6.74641 -4.33017 2.20155 2.75372 3.08163 3.10637 3.13840 3.18868 3.94529 4.41180 4.65869 4.70286 4.88491 5.15873 5.26796 5.57924 5.68156 5.73375 5.77414 5.85624 5.93804 5.96040 6.04372 6.14975 6.29383 6.39085 6.46504 6.48748 6.83731 6.98451 7.09243 7.32361 7.38573 7.46123 7.64008 7.74503 7.92167 8.08425 8.17785 8.32677 8.67316 8.91891 9.00509 10.19921 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.056849 B = 0.004012 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.413421 B = 6977.806549 C = 7107.031857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.168 4.168 11 C -0.079 4.079 12 C -0.214 4.214 13 C 0.124 3.876 14 N -0.675 5.675 15 C 0.082 3.918 16 C -0.131 4.131 17 C -0.170 4.170 18 C -0.165 4.165 19 C -0.093 4.093 20 C -0.085 4.085 21 C -0.228 4.228 22 H 0.280 0.720 23 H 0.117 0.883 24 H 0.087 0.913 25 H 0.019 0.981 26 H 0.062 0.938 27 H 0.341 0.659 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 -11.578 -5.416 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.187 4.187 11 C -0.098 4.098 12 C -0.216 4.216 13 C -0.003 4.003 14 N -0.305 5.305 15 C -0.029 4.029 16 C -0.170 4.170 17 C -0.189 4.189 18 C -0.183 4.183 19 C -0.131 4.131 20 C -0.104 4.104 21 C -0.247 4.247 22 H 0.090 0.910 23 H 0.135 0.865 24 H 0.105 0.895 25 H 0.037 0.963 26 H 0.080 0.920 27 H 0.160 0.840 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.957 -10.986 -5.788 12.571 hybrid contribution 0.711 0.019 0.706 1.002 sum -1.247 -10.967 -5.082 12.152 Atomic orbital electron populations 1.69839 1.07593 1.29066 1.35290 1.25910 0.94706 1.01302 0.92247 0.86293 0.81034 0.81043 0.78531 1.18414 1.19690 1.20045 1.19629 0.98139 0.91350 1.40184 0.90481 1.17630 0.91066 0.91965 0.88367 1.21318 0.99397 0.96805 1.01170 1.20502 0.98347 0.92509 0.98423 1.18909 1.01361 0.92996 1.08285 1.20588 0.97637 0.93776 0.88310 1.60651 1.08036 1.27004 1.34779 1.22465 0.98222 0.87621 0.94563 1.22173 1.01062 0.95849 0.97871 1.23182 1.01403 0.98733 0.95536 1.23349 1.00379 0.96541 0.98038 1.21390 1.02504 0.92836 0.96337 1.20354 0.95589 0.96218 0.98268 1.20928 1.03804 0.92949 1.07065 0.90958 0.86523 0.89468 0.96305 0.91972 0.83968 0.89886 0.90665 0.91562 0.86404 0.86176 0.91235 0.89885 0.89957 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.64 10.95 55.55 0.61 -20.03 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.76 29.60 -169.99 -5.03 13.73 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.42 9.05 -37.74 -0.34 -12.77 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.11 3.02 5.58 -106.82 -0.60 2.43 16 10 C -0.17 -4.40 8.70 -38.87 -0.34 -4.74 16 11 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 12 C -0.21 -4.64 5.42 -104.33 -0.56 -5.20 16 13 C 0.12 2.19 5.66 -4.98 -0.03 2.17 16 14 N -0.67 -10.67 6.36 -106.17 -0.67 -11.34 16 15 C 0.08 1.08 3.50 -65.99 -0.23 0.85 16 16 C -0.13 -1.53 6.51 -26.82 -0.17 -1.70 16 17 C -0.17 -1.80 10.78 -35.69 -0.38 -2.18 16 18 C -0.16 -1.73 10.77 -35.70 -0.38 -2.12 16 19 C -0.09 -1.11 6.55 -26.82 -0.18 -1.29 16 20 C -0.09 -1.90 9.67 -39.66 -0.38 -2.29 16 21 C -0.23 -5.64 9.80 -38.87 -0.38 -6.02 16 22 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 23 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 24 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 25 H 0.02 0.31 8.08 -51.93 -0.42 -0.10 16 26 H 0.06 1.08 8.02 -51.93 -0.42 0.66 16 27 H 0.34 5.39 8.07 -39.29 -0.32 5.08 16 28 H 0.08 1.09 7.83 -51.93 -0.41 0.68 16 29 H 0.08 0.90 7.56 -51.93 -0.39 0.51 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 35 H 0.08 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 301.58 15.07 4.54 4.54 Total: -1.00 -26.97 301.58 -10.21 -37.18 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.20 Total: 9.20 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: -4.46 Total: -33.28 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: -0.07 Total: -31.37 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.97 -10.21 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399073542.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.662 kcal (2) G-P(sol) polarization free energy of solvation -26.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds