Wall clock time and date at job start Mon Mar 30 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48505 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47335 * 300.00277 * 3 2 1 6 6 H 1.48508 * 109.46733 * 59.99953 * 3 2 1 7 7 C 1.39950 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00323 * 197.86570 * 7 2 1 9 9 C 1.41398 * 119.99737 * 17.86893 * 7 2 1 10 10 C 1.40721 * 120.24475 * 24.38136 * 9 7 2 11 11 C 1.37616 * 119.74615 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24699 * 0.27327 * 11 10 9 13 13 C 1.50700 * 119.74858 * 179.70329 * 12 11 10 14 14 N 1.46900 * 109.47178 * 90.00558 * 13 12 11 15 15 C 1.46904 * 111.00447 * 180.02562 * 14 13 12 16 16 C 1.54631 * 111.03099 * 267.02205 * 15 14 13 17 17 C 1.51110 * 104.72388 * 217.33118 * 16 15 14 18 18 C 1.30528 * 111.09832 * 16.43541 * 17 16 15 19 19 C 1.51103 * 111.10794 * 0.02562 * 18 17 16 20 20 C 1.38641 * 120.50217 * 359.44630 * 12 11 10 21 21 C 1.37620 * 120.24415 * 0.55833 * 20 12 11 22 22 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.12500 * 0.02562 * 10 9 7 24 24 H 1.07993 * 119.87882 * 180.02562 * 11 10 9 25 25 H 1.09006 * 109.47321 * 209.99649 * 13 12 11 26 26 H 1.08995 * 109.47321 * 330.00391 * 13 12 11 27 27 H 1.00903 * 111.00083 * 56.03879 * 14 13 12 28 28 H 1.08997 * 110.91029 * 31.02429 * 15 14 13 29 29 H 1.09000 * 110.38985 * 336.13996 * 16 15 14 30 30 H 1.09000 * 110.38791 * 98.52427 * 16 15 14 31 31 H 1.07993 * 124.44662 * 196.46212 * 17 16 15 32 32 H 1.08003 * 124.44420 * 180.02562 * 18 17 16 33 33 H 1.09005 * 110.38430 * 224.74816 * 19 18 17 34 34 H 1.08997 * 110.48272 * 102.42673 * 19 18 17 35 35 H 1.07994 * 119.87821 * 180.25618 * 20 12 11 36 36 H 1.07998 * 120.12492 * 179.70387 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0488 -1.2347 0.2864 9 6 1.3521 -2.4068 -0.3768 10 6 0.2209 -2.3615 -1.2126 11 6 -0.4098 -3.5306 -1.5720 12 6 0.0619 -4.7493 -1.1093 13 6 -0.6414 -6.0222 -1.5045 14 7 -0.0524 -6.5421 -2.7457 15 6 -0.7150 -7.7851 -3.1627 16 6 0.0287 -9.0229 -2.6097 17 6 -0.0599 -10.0497 -3.7147 18 6 -0.3911 -9.4930 -4.8479 19 6 -0.5781 -8.0022 -4.6877 20 6 1.1789 -4.8064 -0.2900 21 6 1.8254 -3.6499 0.0822 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1508 -1.4128 -1.5707 24 1 -1.2778 -3.4983 -2.2137 25 1 -0.5281 -6.7613 -0.7113 26 1 -1.7004 -5.8182 -1.6625 27 1 0.9422 -6.6784 -2.6446 28 1 -1.7618 -7.7888 -2.8589 29 1 1.0703 -8.7783 -2.4012 30 1 -0.4634 -9.3907 -1.7093 31 1 0.1260 -11.1054 -3.5839 32 1 -0.5153 -10.0278 -5.7780 33 1 -1.4831 -7.6758 -5.2001 34 1 0.2893 -7.4656 -5.0720 35 1 1.5401 -5.7616 0.0613 36 1 2.6925 -3.6963 0.7243 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399073542.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:52 Heat of formation + Delta-G solvation = 13.787977 kcal Electronic energy + Delta-G solvation = -16332.272391 eV Core-core repulsion = 13779.927803 eV Total energy + Delta-G solvation = -2552.344587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03944 -39.26500 -36.23661 -34.90335 -31.93476 -31.11744 -29.11888 -28.92774 -26.99770 -24.57103 -22.84553 -21.77517 -21.35062 -19.58923 -19.20897 -17.33460 -17.10514 -16.52916 -16.14056 -15.71683 -15.57693 -14.88055 -14.31196 -13.87192 -13.80674 -13.65443 -13.43999 -13.30158 -12.98819 -12.77969 -12.65925 -12.41061 -12.34415 -12.20424 -12.01341 -11.93459 -11.38250 -11.21576 -11.00025 -9.77151 -9.33652 -9.31904 -9.09596 -8.62968 -6.32214 0.95710 1.16783 1.38221 1.40000 1.50221 1.53735 2.21432 2.70356 3.35615 3.76923 3.81304 3.90169 4.16820 4.33014 4.37388 4.44104 4.57508 4.65834 4.67788 4.82305 4.86520 4.88279 5.06070 5.08182 5.12427 5.15472 5.17701 5.40416 5.48335 5.64367 5.72984 5.96206 6.04247 6.12086 6.21711 6.31520 6.40806 6.54671 6.72921 6.95823 7.06066 8.34309 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.056849 B = 0.004012 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.413421 B = 6977.806549 C = 7107.031857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.074 0.926 9 C 0.079 3.921 10 C -0.192 4.192 11 C -0.087 4.087 12 C -0.201 4.201 13 C 0.133 3.867 14 N -0.683 5.683 15 C 0.079 3.921 16 C -0.129 4.129 17 C -0.172 4.172 18 C -0.166 4.166 19 C -0.094 4.094 20 C -0.085 4.085 21 C -0.244 4.244 22 H 0.287 0.713 23 H 0.098 0.902 24 H 0.101 0.899 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.341 0.659 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 -13.151 -5.878 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.533 4.533 8 H 0.092 0.908 9 C 0.077 3.923 10 C -0.211 4.211 11 C -0.105 4.105 12 C -0.202 4.202 13 C 0.005 3.995 14 N -0.313 5.313 15 C -0.031 4.031 16 C -0.168 4.168 17 C -0.190 4.190 18 C -0.184 4.184 19 C -0.132 4.132 20 C -0.103 4.103 21 C -0.264 4.264 22 H 0.098 0.902 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.160 0.840 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.984 -12.585 -6.255 14.193 hybrid contribution 0.653 0.349 0.819 1.104 sum -1.331 -12.236 -5.436 13.455 Atomic orbital electron populations 1.69889 1.09028 1.30422 1.35884 1.26762 0.95490 1.04534 0.91220 0.85166 0.79404 0.76205 0.78951 1.18213 1.18887 1.18984 1.19866 0.98321 0.92707 1.42402 0.90829 1.17971 0.91910 0.93121 0.89312 1.21274 1.00355 0.97059 1.02447 1.20737 0.98640 0.92603 0.98564 1.19351 1.00521 0.94098 1.06262 1.20468 0.97309 0.92097 0.89659 1.60551 1.08160 1.28979 1.33608 1.22519 0.98128 0.87007 0.95465 1.22121 1.00639 0.95487 0.98552 1.23328 1.01262 0.99491 0.94939 1.23459 1.00386 0.95523 0.99044 1.21372 1.02262 0.94113 0.95412 1.20689 0.95237 0.96785 0.97600 1.21156 1.04432 0.93268 1.07500 0.90199 0.88438 0.88117 0.94734 0.91551 0.83988 0.89791 0.90993 0.91018 0.84430 0.84153 0.90930 0.90907 0.86683 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.30 10.95 21.83 0.24 -44.06 16 2 C 0.03 1.78 5.14 85.26 0.44 2.22 16 3 Si 0.98 39.06 29.60 68.60 2.03 41.09 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 7 C -0.50 -27.97 9.05 23.46 0.21 -27.76 16 8 H 0.07 3.96 7.91 -2.91 -0.02 3.93 16 9 C 0.08 4.40 5.58 -21.29 -0.12 4.28 16 10 C -0.19 -10.42 8.70 22.73 0.20 -10.23 16 11 C -0.09 -4.12 9.67 22.22 0.21 -3.90 16 12 C -0.20 -8.47 5.42 -19.67 -0.11 -8.58 16 13 C 0.13 4.37 5.66 85.56 0.48 4.86 16 14 N -0.68 -20.24 6.36 -489.82 -3.11 -23.35 16 15 C 0.08 1.89 3.50 46.03 0.16 2.05 16 16 C -0.13 -2.68 6.51 30.53 0.20 -2.48 16 17 C -0.17 -3.11 10.78 26.26 0.28 -2.83 16 18 C -0.17 -3.02 10.77 26.26 0.28 -2.74 16 19 C -0.09 -2.05 6.55 30.54 0.20 -1.85 16 20 C -0.08 -3.66 9.67 22.22 0.21 -3.45 16 21 C -0.24 -12.20 9.80 22.73 0.22 -11.97 16 22 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 23 H 0.10 5.57 6.16 -2.91 -0.02 5.55 16 24 H 0.10 4.41 8.06 -2.91 -0.02 4.38 16 25 H 0.03 1.05 8.08 -2.38 -0.02 1.03 16 26 H 0.07 2.15 8.02 -2.39 -0.02 2.13 16 27 H 0.34 10.13 8.07 -89.69 -0.72 9.41 16 28 H 0.08 2.01 7.83 -2.39 -0.02 1.99 16 29 H 0.07 1.55 7.56 -2.39 -0.02 1.53 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.07 1.74 8.08 -2.39 -0.02 1.73 16 35 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 36 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -58.95 301.58 2.38 -56.57 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.34 Total: 32.13 kcal Atomic # 6 Polarization: -65.26 SS G_CDS: 2.89 Total: -62.38 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -2.87 Total: -67.41 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -58.95 2.38 -56.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399073542.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.361 kcal (2) G-P(sol) polarization free energy of solvation -58.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds