Wall clock time and date at job start Mon Mar 30 2020 05:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31166 * 1 3 3 Cl 1.73600 * 119.99799 * 2 1 4 4 C 1.50696 * 119.99822 * 179.97438 * 2 1 3 5 5 N 1.46901 * 109.47015 * 113.04509 * 4 2 1 6 6 C 1.46848 * 110.99903 * 311.80793 * 5 4 2 7 7 C 1.53038 * 109.52562 * 185.83863 * 6 5 4 8 8 C 1.53118 * 109.28079 * 300.82584 * 7 6 5 9 9 C 1.52994 * 109.57618 * 177.58739 * 8 7 6 10 10 C 1.50699 * 109.47247 * 65.28681 * 9 8 7 11 11 H 1.08006 * 119.99589 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00033 * 180.02562 * 10 9 8 13 13 N 1.31505 * 120.00350 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99922 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46895 * 89.99578 * 14 12 10 16 16 H 1.48491 * 109.47169 * 209.99643 * 14 12 10 17 17 H 1.48501 * 109.46925 * 330.00245 * 14 12 10 18 18 C 1.53127 * 109.15929 * 57.64934 * 8 7 6 19 19 C 1.46844 * 111.00111 * 76.02209 * 5 4 2 20 20 H 1.07997 * 120.00059 * 180.02562 * 1 2 3 21 21 H 1.08003 * 119.99776 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47014 * 233.04204 * 4 2 1 23 23 H 1.09004 * 109.47231 * 353.04179 * 4 2 1 24 24 H 1.08996 * 109.46575 * 305.86010 * 6 5 4 25 25 H 1.09006 * 109.45841 * 65.82837 * 6 5 4 26 26 H 1.08996 * 109.50570 * 180.88079 * 7 6 5 27 27 H 1.09000 * 109.50024 * 60.76315 * 7 6 5 28 28 H 1.08996 * 109.52351 * 297.75211 * 8 7 6 29 29 H 1.09004 * 109.47365 * 185.28362 * 9 8 7 30 30 H 1.09007 * 109.47102 * 305.28369 * 9 8 7 31 31 H 0.96996 * 120.00565 * 180.02562 * 13 12 10 32 32 H 1.08994 * 109.50269 * 182.40339 * 18 8 7 33 33 H 1.09003 * 109.50186 * 62.28870 * 18 8 7 34 34 H 1.08996 * 109.46022 * 294.17351 * 19 5 4 35 35 H 1.08996 * 109.46517 * 54.15801 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3117 0.0000 0.0000 3 17 2.1796 1.5035 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.7794 -1.4586 -1.2738 6 6 1.8934 -1.1782 -2.4108 7 6 2.6258 -1.4878 -3.7185 8 6 3.8886 -0.6265 -3.8069 9 6 4.6577 -0.9737 -5.0831 10 6 3.8357 -0.5877 -6.2857 11 1 2.8619 -0.1398 -6.1529 12 6 4.3264 -0.8072 -7.5553 13 7 5.5118 -1.3529 -7.7170 14 14 3.3071 -0.3292 -9.0461 15 1 3.6232 1.0688 -9.4342 16 1 3.6241 -1.2401 -10.1751 17 1 1.8637 -0.4363 -8.7138 18 6 4.7714 -0.9021 -2.5864 19 6 3.9768 -0.6094 -1.3116 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5400 0.9354 0.0004 22 1 2.7818 -1.3104 0.8217 23 1 1.3633 -2.1298 0.1255 24 1 1.0013 -1.8002 -2.3381 25 1 1.6053 -0.1270 -2.3961 26 1 1.9733 -1.2648 -4.5626 27 1 2.9021 -2.5420 -3.7400 28 1 3.6104 0.4272 -3.8245 29 1 5.6016 -0.4289 -5.0981 30 1 4.8563 -2.0453 -5.1074 31 1 5.8572 -1.5070 -8.6102 32 1 5.6519 -0.2606 -2.6218 33 1 5.0814 -1.9471 -2.5901 34 1 3.6789 0.4390 -1.3020 35 1 4.5980 -0.8185 -0.4407 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399412678.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:36 Heat of formation + Delta-G solvation = -4.537966 kcal Electronic energy + Delta-G solvation = -15866.891456 eV Core-core repulsion = 13311.319347 eV Total energy + Delta-G solvation = -2555.572110 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.10592 -36.78173 -35.03691 -32.98497 -31.68847 -30.29847 -28.22678 -25.50694 -23.33287 -22.47857 -20.97226 -20.02178 -18.72840 -16.25095 -16.19899 -15.33515 -14.88789 -14.51623 -14.34858 -13.60201 -13.46326 -12.99494 -12.44196 -12.14276 -11.98754 -11.85694 -11.81519 -11.39157 -11.21595 -11.02665 -10.75656 -10.55388 -10.44633 -10.24262 -9.89430 -9.49350 -9.33356 -9.00909 -8.82943 -8.29102 -8.03418 -5.93904 -3.95152 1.72638 2.12198 3.34628 3.40979 3.43916 4.14624 4.50314 4.55993 5.04794 5.35998 5.39312 5.41300 5.52178 5.56835 5.69821 5.80320 5.91792 5.97924 6.02661 6.07890 6.23234 6.29947 6.49497 6.62093 6.71971 7.02643 7.14370 7.24343 7.31173 7.37915 7.75030 7.92095 8.07326 8.50679 9.11504 9.68107 11.17490 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.035518 B = 0.005483 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.148516 B = 5105.748172 C = 5311.122907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.099 4.099 3 Cl -0.085 7.085 4 C 0.089 3.911 5 N -0.524 5.524 6 C 0.054 3.946 7 C -0.099 4.099 8 C -0.080 4.080 9 C 0.028 3.972 10 C -0.513 4.513 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.888 3.112 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.112 4.112 19 C 0.043 3.957 20 H 0.123 0.877 21 H 0.108 0.892 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.063 0.937 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.259 0.741 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.178 1.460 16.553 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.127 4.127 3 Cl -0.057 7.057 4 C -0.039 4.039 5 N -0.247 5.247 6 C -0.073 4.073 7 C -0.137 4.137 8 C -0.099 4.099 9 C -0.009 4.009 10 C -0.552 4.552 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.150 4.150 19 C -0.085 4.085 20 H 0.141 0.859 21 H 0.126 0.874 22 H 0.104 0.896 23 H 0.113 0.887 24 H 0.082 0.918 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.797 1.019 16.359 18.150 hybrid contribution -0.771 1.280 -0.852 1.720 sum -8.567 2.299 15.506 17.864 Atomic orbital electron populations 1.24034 0.93951 1.03532 0.99984 1.24538 0.94948 0.89166 1.04026 1.98372 1.77657 1.33081 1.96583 1.21598 0.97504 0.90635 0.94205 1.62284 1.07030 1.54434 1.00929 1.22239 0.95048 0.98726 0.91316 1.21542 0.97393 1.00536 0.94230 1.21218 0.94895 0.98171 0.95625 1.19117 0.94929 0.96808 0.90054 1.21263 1.03009 1.39918 0.90971 0.92745 1.25011 0.95015 0.95453 0.98995 1.69960 1.17384 1.44087 1.22181 0.86663 0.80654 0.78284 0.82815 1.20799 1.21304 1.19943 1.21692 0.97837 1.01736 0.93694 1.22443 0.91204 0.95806 0.99006 0.85922 0.87372 0.89565 0.88725 0.91806 0.94850 0.90935 0.91908 0.93091 0.96792 0.96525 0.93128 0.92200 0.91777 0.93377 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 14.02 28.97 0.41 -1.23 16 2 C -0.10 -1.09 4.03 -36.07 -0.15 -1.23 16 3 Cl -0.09 -1.06 26.05 -51.86 -1.35 -2.41 16 4 C 0.09 0.99 5.85 -4.98 -0.03 0.96 16 5 N -0.52 -7.52 4.86 -236.12 -1.15 -8.66 16 6 C 0.05 0.84 4.80 -3.83 -0.02 0.82 16 7 C -0.10 -1.89 5.15 -26.65 -0.14 -2.03 16 8 C -0.08 -1.68 2.20 -90.50 -0.20 -1.88 16 9 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 10 C -0.51 -14.49 8.45 -34.44 -0.29 -14.78 16 11 H 0.05 1.50 7.08 -52.48 -0.37 1.12 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 14 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.11 -2.00 5.38 -26.65 -0.14 -2.15 16 19 C 0.04 0.65 5.02 -3.84 -0.02 0.63 16 20 H 0.12 0.92 7.85 -52.49 -0.41 0.51 16 21 H 0.11 0.95 8.06 -52.48 -0.42 0.53 16 22 H 0.09 0.88 7.87 -51.93 -0.41 0.48 16 23 H 0.09 0.90 7.80 -51.93 -0.41 0.49 16 24 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 25 H 0.03 0.53 7.07 -51.93 -0.37 0.17 16 26 H 0.07 1.47 7.05 -51.93 -0.37 1.11 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.74 5.27 -51.93 -0.27 0.47 16 35 H 0.06 0.87 7.96 -51.93 -0.41 0.45 16 LS Contribution 291.16 15.07 4.39 4.39 Total: -1.00 -29.88 291.16 -8.73 -38.61 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -5.53 Total: -3.50 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -0.80 Total: -18.77 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.41 Total: -35.15 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.35 Total: -2.41 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.88 -8.73 -38.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399412678.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.074 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds