Wall clock time and date at job start Mon Mar 30 2020 05:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31166 * 1 3 3 Cl 1.73600 * 119.99799 * 2 1 4 4 C 1.50696 * 119.99822 * 179.97438 * 2 1 3 5 5 N 1.46901 * 109.47015 * 113.04509 * 4 2 1 6 6 C 1.46848 * 110.99903 * 311.80793 * 5 4 2 7 7 C 1.53038 * 109.52562 * 185.83863 * 6 5 4 8 8 C 1.53118 * 109.28079 * 300.82584 * 7 6 5 9 9 C 1.52994 * 109.57618 * 177.58739 * 8 7 6 10 10 C 1.50699 * 109.47247 * 65.28681 * 9 8 7 11 11 H 1.08006 * 119.99589 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00033 * 180.02562 * 10 9 8 13 13 N 1.31505 * 120.00350 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99922 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46895 * 89.99578 * 14 12 10 16 16 H 1.48491 * 109.47169 * 209.99643 * 14 12 10 17 17 H 1.48501 * 109.46925 * 330.00245 * 14 12 10 18 18 C 1.53127 * 109.15929 * 57.64934 * 8 7 6 19 19 C 1.46844 * 111.00111 * 76.02209 * 5 4 2 20 20 H 1.07997 * 120.00059 * 180.02562 * 1 2 3 21 21 H 1.08003 * 119.99776 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47014 * 233.04204 * 4 2 1 23 23 H 1.09004 * 109.47231 * 353.04179 * 4 2 1 24 24 H 1.08996 * 109.46575 * 305.86010 * 6 5 4 25 25 H 1.09006 * 109.45841 * 65.82837 * 6 5 4 26 26 H 1.08996 * 109.50570 * 180.88079 * 7 6 5 27 27 H 1.09000 * 109.50024 * 60.76315 * 7 6 5 28 28 H 1.08996 * 109.52351 * 297.75211 * 8 7 6 29 29 H 1.09004 * 109.47365 * 185.28362 * 9 8 7 30 30 H 1.09007 * 109.47102 * 305.28369 * 9 8 7 31 31 H 0.96996 * 120.00565 * 180.02562 * 13 12 10 32 32 H 1.08994 * 109.50269 * 182.40339 * 18 8 7 33 33 H 1.09003 * 109.50186 * 62.28870 * 18 8 7 34 34 H 1.08996 * 109.46022 * 294.17351 * 19 5 4 35 35 H 1.08996 * 109.46517 * 54.15801 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3117 0.0000 0.0000 3 17 2.1796 1.5035 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.7794 -1.4586 -1.2738 6 6 1.8934 -1.1782 -2.4108 7 6 2.6258 -1.4878 -3.7185 8 6 3.8886 -0.6265 -3.8069 9 6 4.6577 -0.9737 -5.0831 10 6 3.8357 -0.5877 -6.2857 11 1 2.8619 -0.1398 -6.1529 12 6 4.3264 -0.8072 -7.5553 13 7 5.5118 -1.3529 -7.7170 14 14 3.3071 -0.3292 -9.0461 15 1 3.6232 1.0688 -9.4342 16 1 3.6241 -1.2401 -10.1751 17 1 1.8637 -0.4363 -8.7138 18 6 4.7714 -0.9021 -2.5864 19 6 3.9768 -0.6094 -1.3116 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5400 0.9354 0.0004 22 1 2.7818 -1.3104 0.8217 23 1 1.3633 -2.1298 0.1255 24 1 1.0013 -1.8002 -2.3381 25 1 1.6053 -0.1270 -2.3961 26 1 1.9733 -1.2648 -4.5626 27 1 2.9021 -2.5420 -3.7400 28 1 3.6104 0.4272 -3.8245 29 1 5.6016 -0.4289 -5.0981 30 1 4.8563 -2.0453 -5.1074 31 1 5.8572 -1.5070 -8.6102 32 1 5.6519 -0.2606 -2.6218 33 1 5.0814 -1.9471 -2.5901 34 1 3.6789 0.4390 -1.3020 35 1 4.5980 -0.8185 -0.4407 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399412678.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:36 Heat of formation + Delta-G solvation = -22.558760 kcal Electronic energy + Delta-G solvation = -15867.672897 eV Core-core repulsion = 13311.319347 eV Total energy + Delta-G solvation = -2556.353550 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.109 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32564 -37.78151 -36.39025 -34.70253 -33.11398 -31.65504 -29.89264 -26.97577 -24.95826 -23.87953 -22.40157 -21.15337 -20.13302 -18.41869 -17.23689 -16.58310 -16.33417 -15.86265 -15.53418 -15.14533 -14.79845 -14.55051 -13.96181 -13.59806 -13.38831 -13.23049 -12.90021 -12.77141 -12.68606 -12.48008 -12.37571 -12.14225 -12.10440 -11.70310 -11.55473 -11.25215 -10.87991 -10.69089 -10.51539 -10.16155 -9.13417 -8.16728 -6.26466 0.97343 1.32935 1.39367 1.40573 1.51497 2.42013 3.05971 3.16358 3.74244 4.03506 4.06484 4.15934 4.28086 4.49491 4.64496 4.67533 4.75032 4.80063 4.86237 4.87904 4.97965 5.09367 5.15980 5.20857 5.33752 5.39475 5.42748 5.47608 5.59034 5.81719 5.89975 6.15102 6.18902 6.31348 6.89516 7.41829 8.95297 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.035518 B = 0.005483 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.148516 B = 5105.748172 C = 5311.122907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 Cl -0.106 7.106 4 C 0.092 3.908 5 N -0.533 5.533 6 C 0.068 3.932 7 C -0.095 4.095 8 C -0.073 4.073 9 C 0.034 3.966 10 C -0.529 4.529 11 H 0.059 0.941 12 C -0.002 4.002 13 N -0.936 5.936 14 Si 0.960 3.040 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.262 1.262 18 C -0.108 4.108 19 C 0.051 3.949 20 H 0.147 0.853 21 H 0.112 0.888 22 H 0.095 0.905 23 H 0.118 0.882 24 H 0.087 0.913 25 H 0.030 0.970 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.042 0.958 29 H -0.017 1.017 30 H -0.011 1.011 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 1.490 17.623 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 Cl -0.078 7.078 4 C -0.036 4.036 5 N -0.256 5.256 6 C -0.060 4.060 7 C -0.133 4.133 8 C -0.091 4.091 9 C -0.003 4.003 10 C -0.567 4.567 11 H 0.077 0.923 12 C -0.199 4.199 13 N -0.576 5.576 14 Si 0.785 3.215 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.186 1.186 18 C -0.146 4.146 19 C -0.076 4.076 20 H 0.165 0.835 21 H 0.130 0.870 22 H 0.114 0.886 23 H 0.136 0.864 24 H 0.105 0.895 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.002 0.998 30 H 0.007 0.993 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.978 1.053 17.453 20.131 hybrid contribution -0.104 1.243 -1.157 1.701 sum -10.082 2.296 16.296 19.299 Atomic orbital electron populations 1.24333 0.93376 1.04896 0.96782 1.24552 0.95394 0.88308 1.06728 1.98369 1.78235 1.34389 1.96813 1.21682 0.98037 0.91473 0.92367 1.62221 1.06971 1.54246 1.02124 1.22038 0.95286 0.98980 0.89701 1.21420 0.96369 0.99229 0.96238 1.21051 0.95818 0.97889 0.94383 1.19010 0.94212 0.94426 0.92684 1.21642 1.03365 1.39752 0.91969 0.92257 1.25954 0.96204 0.95302 1.02456 1.70101 1.19219 1.45239 1.23082 0.85519 0.79353 0.78083 0.78550 1.20016 1.20810 1.18621 1.21610 0.97745 1.01124 0.94115 1.22326 0.91644 0.95981 0.97665 0.83527 0.86980 0.88637 0.86390 0.89458 0.95141 0.92655 0.93056 0.93981 0.99818 0.99274 0.92938 0.92501 0.92596 0.93454 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 14.02 67.62 0.95 -1.35 16 2 C -0.12 -2.33 4.03 25.48 0.10 -2.22 16 3 Cl -0.11 -2.45 26.05 -2.72 -0.07 -2.52 16 4 C 0.09 1.73 5.85 85.56 0.50 2.23 16 5 N -0.53 -14.01 4.86 -900.95 -4.38 -18.38 16 6 C 0.07 1.95 4.80 86.33 0.41 2.36 16 7 C -0.09 -3.60 5.15 30.65 0.16 -3.44 16 8 C -0.07 -3.11 2.20 -10.71 -0.02 -3.13 16 9 C 0.03 1.84 4.45 29.85 0.13 1.97 16 10 C -0.53 -30.58 8.45 25.60 0.22 -30.37 16 11 H 0.06 3.29 7.08 -2.91 -0.02 3.27 16 12 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 13 N -0.94 -58.26 13.29 21.44 0.28 -57.97 16 14 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 15 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 18 C -0.11 -3.90 5.38 30.65 0.16 -3.74 16 19 C 0.05 1.48 5.02 86.33 0.43 1.91 16 20 H 0.15 1.48 7.85 -2.91 -0.02 1.46 16 21 H 0.11 1.60 8.06 -2.91 -0.02 1.58 16 22 H 0.10 1.63 7.87 -2.39 -0.02 1.61 16 23 H 0.12 1.69 7.80 -2.39 -0.02 1.67 16 24 H 0.09 2.13 8.12 -2.39 -0.02 2.11 16 25 H 0.03 0.91 7.07 -2.38 -0.02 0.89 16 26 H 0.05 2.26 7.05 -2.39 -0.02 2.24 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 30 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 31 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.05 1.39 5.27 -2.39 -0.01 1.38 16 35 H 0.08 2.09 7.96 -2.39 -0.02 2.07 16 Total: -1.00 -65.60 291.16 2.42 -63.18 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 1.04 Total: 4.05 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 3.51 Total: -35.44 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -4.09 Total: -76.36 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.07 Total: -2.52 kcal Total: -65.60 2.42 -63.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399412678.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.619 kcal (2) G-P(sol) polarization free energy of solvation -65.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds