Wall clock time and date at job start Mon Mar 30 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86802 * 120.00390 * 2 1 4 4 H 1.48495 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47003 * 299.99941 * 3 2 1 6 6 H 1.48492 * 109.46898 * 59.99922 * 3 2 1 7 7 C 1.39875 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99354 * 197.96363 * 7 2 1 9 9 C 1.41134 * 119.99935 * 17.96015 * 7 2 1 10 10 C 1.40883 * 120.15381 * 204.60048 * 9 7 2 11 11 C 1.36342 * 119.83802 * 180.02562 * 10 9 7 12 12 C 1.39568 * 120.15851 * 0.02562 * 11 10 9 13 13 N 1.38858 * 119.83855 * 179.97438 * 12 11 10 14 14 C 1.46502 * 119.99657 * 180.27094 * 13 12 11 15 15 C 1.50696 * 109.47095 * 179.72621 * 14 13 12 16 16 C 1.30532 * 124.44774 * 94.70096 * 15 14 13 17 17 C 1.51101 * 111.10497 * 179.88135 * 16 15 14 18 18 C 1.54634 * 104.78057 * 343.93181 * 17 16 15 19 19 C 1.51100 * 124.45161 * 275.00356 * 15 14 13 20 20 C 1.39560 * 120.31441 * 0.25202 * 12 11 10 21 21 C 1.36345 * 120.16486 * 359.48082 * 20 12 11 22 22 H 0.97002 * 119.99858 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.08142 * 0.02562 * 10 9 7 24 24 H 1.07999 * 119.92056 * 179.97438 * 11 10 9 25 25 H 0.97001 * 120.00104 * 0.02562 * 13 12 11 26 26 H 1.08997 * 109.47472 * 299.73225 * 14 13 12 27 27 H 1.09003 * 109.46933 * 59.73166 * 14 13 12 28 28 H 1.08006 * 124.44490 * 0.02562 * 16 15 14 29 29 H 1.09001 * 110.52425 * 225.02096 * 17 16 15 30 30 H 1.08996 * 110.28891 * 102.73156 * 17 16 15 31 31 H 1.08998 * 111.04038 * 266.40851 * 18 17 16 32 32 H 1.08997 * 111.03484 * 142.47091 * 18 17 16 33 33 H 1.08997 * 110.38781 * 315.22618 * 19 15 14 34 34 H 1.09005 * 110.38822 * 77.48625 * 19 15 14 35 35 H 1.08008 * 119.91957 * 179.72724 * 20 12 11 36 36 H 1.07998 * 120.08530 * 180.23441 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7030 1.3462 -0.0006 5 1 1.8844 2.3964 -1.2126 6 1 1.8844 2.3963 1.2124 7 6 2.0083 -1.2114 -0.0005 8 1 3.0488 -1.2342 0.2879 9 6 1.3541 -2.4037 -0.3780 10 6 1.8265 -3.6473 0.0857 11 6 1.1900 -4.7951 -0.2834 12 6 0.0733 -4.7401 -1.1188 13 7 -0.5696 -5.9133 -1.4910 14 6 -1.7385 -5.8600 -2.3725 15 6 -2.2404 -7.2581 -2.6263 16 6 -3.1928 -7.8356 -1.9457 17 6 -3.4555 -9.2334 -2.4560 18 6 -2.7771 -9.2804 -3.8448 19 6 -1.7029 -8.1779 -3.6979 20 6 -0.3967 -3.5121 -1.5865 21 6 0.2266 -2.3558 -1.2213 22 1 -0.4850 0.8401 0.0004 23 1 2.6908 -3.6914 0.7319 24 1 1.5512 -5.7493 0.0709 25 1 -0.2427 -6.7683 -1.1701 26 1 -2.5246 -5.2722 -1.8986 27 1 -1.4590 -5.3970 -3.3189 28 1 -3.7248 -7.3741 -1.1269 29 1 -4.5269 -9.4106 -2.5505 30 1 -3.0070 -9.9697 -1.7891 31 1 -3.4859 -9.0332 -4.6351 32 1 -2.3181 -10.2527 -4.0232 33 1 -1.5825 -7.6375 -4.6368 34 1 -0.7525 -8.6106 -3.3852 35 1 -1.2588 -3.4773 -2.2363 36 1 -0.1405 -1.4059 -1.5810 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401175776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:58 Heat of formation + Delta-G solvation = 29.339727 kcal Electronic energy + Delta-G solvation = -16288.309159 eV Core-core repulsion = 13736.638946 eV Total energy + Delta-G solvation = -2551.670213 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.90716 -37.71924 -34.90015 -32.96316 -30.22668 -29.42141 -28.55344 -27.97524 -25.12901 -23.61826 -21.11142 -20.90626 -19.95155 -18.05335 -17.17598 -16.34361 -15.68777 -15.18326 -14.94545 -14.26951 -13.79813 -13.74205 -12.82330 -12.67136 -12.58282 -12.06084 -11.92341 -11.76699 -11.72405 -11.32556 -11.22437 -11.09250 -11.01878 -10.95597 -10.72316 -10.42770 -9.66892 -9.28495 -9.19665 -8.78451 -8.49336 -7.46286 -6.61495 -6.35278 -4.00280 2.11012 2.92870 3.12964 3.17287 3.22785 3.37746 4.07896 4.47430 4.53185 4.63563 4.79623 4.89909 5.13189 5.34169 5.54170 5.63847 5.68656 5.74942 5.84731 5.90874 5.98926 6.02499 6.10222 6.30686 6.35443 6.58382 6.90196 6.97106 6.97279 7.23296 7.38914 7.58716 7.72327 7.87772 8.18455 8.32548 8.52745 8.74570 8.83926 9.09075 9.18542 10.40202 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.058317 B = 0.004023 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.016845 B = 6958.239344 C = 7164.701902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.074 3.926 10 C -0.186 4.186 11 C -0.159 4.159 12 C 0.092 3.908 13 N -0.757 5.757 14 C 0.185 3.815 15 C -0.141 4.141 16 C -0.156 4.156 17 C -0.099 4.099 18 C -0.125 4.125 19 C -0.092 4.092 20 C -0.165 4.165 21 C -0.124 4.124 22 H 0.275 0.725 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.384 0.616 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.124 0.876 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 -12.409 -5.613 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.071 3.929 10 C -0.206 4.206 11 C -0.181 4.181 12 C -0.005 4.005 13 N -0.393 5.393 14 C 0.060 3.940 15 C -0.142 4.142 16 C -0.175 4.175 17 C -0.136 4.136 18 C -0.163 4.163 19 C -0.129 4.129 20 C -0.187 4.187 21 C -0.144 4.144 22 H 0.086 0.914 23 H 0.109 0.891 24 H 0.104 0.896 25 H 0.216 0.784 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.878 -12.134 -5.719 14.646 hybrid contribution 0.380 0.532 0.251 0.700 sum -5.498 -11.603 -5.468 13.956 Atomic orbital electron populations 1.69867 1.07366 1.28467 1.37839 1.25796 0.94644 1.00875 0.92745 0.86371 0.80997 0.81626 0.78291 1.18642 1.19981 1.20303 1.19398 0.97931 0.91380 1.41126 0.90925 1.17496 0.92448 0.91991 0.90995 1.20544 1.02670 0.92609 1.04824 1.19804 0.97905 0.97053 1.03383 1.17371 0.95687 0.85636 1.01759 1.43840 1.32842 1.05848 1.56744 1.19661 0.88793 0.91376 0.94143 1.22188 0.97669 0.96088 0.98240 1.23212 0.98889 0.95818 0.99614 1.21338 1.00700 0.95345 0.96222 1.22445 0.97923 0.98770 0.97130 1.21282 0.98603 0.95204 0.97816 1.20098 1.01702 0.91939 1.04938 1.20932 0.98200 0.96407 0.98857 0.91413 0.89060 0.89641 0.78368 0.92900 0.92966 0.85826 0.91348 0.90851 0.91213 0.91142 0.91173 0.90722 0.89420 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.74 10.97 55.54 0.61 -21.13 16 2 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.45 29.60 -169.99 -5.03 14.41 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 7 C -0.47 -12.89 9.03 -37.87 -0.34 -13.23 16 8 H 0.07 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.07 2.03 5.57 -106.80 -0.60 1.43 16 10 C -0.19 -4.71 9.74 -39.26 -0.38 -5.09 16 11 C -0.16 -3.67 9.82 -39.77 -0.39 -4.06 16 12 C 0.09 2.07 6.67 -83.69 -0.56 1.51 16 13 N -0.76 -13.76 5.69 -59.67 -0.34 -14.10 16 14 C 0.19 2.93 5.32 -5.19 -0.03 2.90 16 15 C -0.14 -1.82 5.53 -100.74 -0.56 -2.37 16 16 C -0.16 -1.83 10.59 -35.70 -0.38 -2.20 16 17 C -0.10 -0.93 6.81 -26.83 -0.18 -1.11 16 18 C -0.13 -1.13 7.19 -25.01 -0.18 -1.30 16 19 C -0.09 -1.01 6.76 -26.83 -0.18 -1.19 16 20 C -0.16 -3.96 9.23 -39.77 -0.37 -4.33 16 21 C -0.12 -3.32 8.64 -39.26 -0.34 -3.65 16 22 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 23 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 24 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 25 H 0.38 6.37 8.46 -40.82 -0.35 6.02 16 26 H 0.05 0.88 7.92 -51.93 -0.41 0.46 16 27 H 0.05 0.85 7.91 -51.93 -0.41 0.43 16 28 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.92 6.68 -52.48 -0.35 1.57 16 36 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 LS Contribution 299.96 15.07 4.52 4.52 Total: -1.00 -28.41 299.96 -10.01 -38.41 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.20 Total: 8.74 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -4.57 Total: -30.85 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.27 Total: -35.23 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.41 -10.01 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401175776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.752 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds