Wall clock time and date at job start Mon Mar 30 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86802 * 120.00390 * 2 1 4 4 H 1.48495 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47003 * 299.99941 * 3 2 1 6 6 H 1.48492 * 109.46898 * 59.99922 * 3 2 1 7 7 C 1.39875 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99354 * 197.96363 * 7 2 1 9 9 C 1.41134 * 119.99935 * 17.96015 * 7 2 1 10 10 C 1.40883 * 120.15381 * 204.60048 * 9 7 2 11 11 C 1.36342 * 119.83802 * 180.02562 * 10 9 7 12 12 C 1.39568 * 120.15851 * 0.02562 * 11 10 9 13 13 N 1.38858 * 119.83855 * 179.97438 * 12 11 10 14 14 C 1.46502 * 119.99657 * 180.27094 * 13 12 11 15 15 C 1.50696 * 109.47095 * 179.72621 * 14 13 12 16 16 C 1.30532 * 124.44774 * 94.70096 * 15 14 13 17 17 C 1.51101 * 111.10497 * 179.88135 * 16 15 14 18 18 C 1.54634 * 104.78057 * 343.93181 * 17 16 15 19 19 C 1.51100 * 124.45161 * 275.00356 * 15 14 13 20 20 C 1.39560 * 120.31441 * 0.25202 * 12 11 10 21 21 C 1.36345 * 120.16486 * 359.48082 * 20 12 11 22 22 H 0.97002 * 119.99858 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.08142 * 0.02562 * 10 9 7 24 24 H 1.07999 * 119.92056 * 179.97438 * 11 10 9 25 25 H 0.97001 * 120.00104 * 0.02562 * 13 12 11 26 26 H 1.08997 * 109.47472 * 299.73225 * 14 13 12 27 27 H 1.09003 * 109.46933 * 59.73166 * 14 13 12 28 28 H 1.08006 * 124.44490 * 0.02562 * 16 15 14 29 29 H 1.09001 * 110.52425 * 225.02096 * 17 16 15 30 30 H 1.08996 * 110.28891 * 102.73156 * 17 16 15 31 31 H 1.08998 * 111.04038 * 266.40851 * 18 17 16 32 32 H 1.08997 * 111.03484 * 142.47091 * 18 17 16 33 33 H 1.08997 * 110.38781 * 315.22618 * 19 15 14 34 34 H 1.09005 * 110.38822 * 77.48625 * 19 15 14 35 35 H 1.08008 * 119.91957 * 179.72724 * 20 12 11 36 36 H 1.07998 * 120.08530 * 180.23441 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7030 1.3462 -0.0006 5 1 1.8844 2.3964 -1.2126 6 1 1.8844 2.3963 1.2124 7 6 2.0083 -1.2114 -0.0005 8 1 3.0488 -1.2342 0.2879 9 6 1.3541 -2.4037 -0.3780 10 6 1.8265 -3.6473 0.0857 11 6 1.1900 -4.7951 -0.2834 12 6 0.0733 -4.7401 -1.1188 13 7 -0.5696 -5.9133 -1.4910 14 6 -1.7385 -5.8600 -2.3725 15 6 -2.2404 -7.2581 -2.6263 16 6 -3.1928 -7.8356 -1.9457 17 6 -3.4555 -9.2334 -2.4560 18 6 -2.7771 -9.2804 -3.8448 19 6 -1.7029 -8.1779 -3.6979 20 6 -0.3967 -3.5121 -1.5865 21 6 0.2266 -2.3558 -1.2213 22 1 -0.4850 0.8401 0.0004 23 1 2.6908 -3.6914 0.7319 24 1 1.5512 -5.7493 0.0709 25 1 -0.2427 -6.7683 -1.1701 26 1 -2.5246 -5.2722 -1.8986 27 1 -1.4590 -5.3970 -3.3189 28 1 -3.7248 -7.3741 -1.1269 29 1 -4.5269 -9.4106 -2.5505 30 1 -3.0070 -9.9697 -1.7891 31 1 -3.4859 -9.0332 -4.6351 32 1 -2.3181 -10.2527 -4.0232 33 1 -1.5825 -7.6375 -4.6368 34 1 -0.7525 -8.6106 -3.3852 35 1 -1.2588 -3.4773 -2.2363 36 1 -0.1405 -1.4059 -1.5810 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401175776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:58 Heat of formation + Delta-G solvation = 15.146583 kcal Electronic energy + Delta-G solvation = -16288.924620 eV Core-core repulsion = 13736.638946 eV Total energy + Delta-G solvation = -2552.285674 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.07626 -39.31369 -36.57241 -34.76214 -31.64299 -31.35348 -29.78860 -29.17094 -26.66302 -25.24850 -22.94388 -21.91589 -21.60023 -19.16396 -19.10941 -17.85512 -16.85356 -16.75028 -16.26954 -15.79056 -15.39295 -15.09549 -14.49891 -14.37659 -13.86205 -13.61012 -13.53867 -13.33359 -12.75757 -12.71377 -12.62687 -12.51982 -12.24772 -12.05644 -11.96798 -11.91552 -11.56813 -11.20480 -11.06907 -10.30998 -9.72355 -9.41967 -8.55455 -8.18006 -6.01346 1.09448 1.12472 1.17285 1.40503 1.54930 1.57986 2.27764 2.83805 3.08849 3.65070 3.68932 3.84669 4.20782 4.22600 4.42772 4.47107 4.49105 4.55809 4.68450 4.87945 4.88779 5.01584 5.03187 5.05249 5.13205 5.21347 5.27317 5.38052 5.45006 5.62834 5.67388 5.79294 5.93456 5.95828 6.18370 6.38084 6.66009 6.85610 7.08014 7.13111 7.30315 8.48323 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.058317 B = 0.004023 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.016845 B = 6958.239344 C = 7164.701902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.978 3.022 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.068 0.932 9 C 0.036 3.964 10 C -0.195 4.195 11 C -0.165 4.165 12 C 0.109 3.891 13 N -0.746 5.746 14 C 0.184 3.816 15 C -0.161 4.161 16 C -0.146 4.146 17 C -0.098 4.098 18 C -0.119 4.119 19 C -0.092 4.092 20 C -0.176 4.176 21 C -0.144 4.144 22 H 0.282 0.718 23 H 0.098 0.902 24 H 0.117 0.883 25 H 0.395 0.605 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.013 -14.127 -6.021 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.537 4.537 8 H 0.087 0.913 9 C 0.033 3.967 10 C -0.215 4.215 11 C -0.187 4.187 12 C 0.010 3.990 13 N -0.381 5.381 14 C 0.060 3.940 15 C -0.162 4.162 16 C -0.165 4.165 17 C -0.135 4.135 18 C -0.157 4.157 19 C -0.129 4.129 20 C -0.198 4.198 21 C -0.164 4.164 22 H 0.092 0.908 23 H 0.116 0.884 24 H 0.135 0.865 25 H 0.229 0.771 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.140 0.860 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.354 -13.904 -6.135 16.472 hybrid contribution 0.421 0.884 0.374 1.048 sum -5.934 -13.020 -5.762 15.425 Atomic orbital electron populations 1.69928 1.08809 1.29753 1.38523 1.26635 0.95454 1.04167 0.91803 0.85231 0.79386 0.76760 0.78686 1.18391 1.19133 1.19327 1.19626 0.98044 0.92761 1.43274 0.91347 1.17824 0.93526 0.93096 0.92285 1.20764 1.03069 0.92801 1.04867 1.20102 0.97767 0.97706 1.03129 1.17489 0.95001 0.86547 0.99975 1.43903 1.32929 1.04921 1.56356 1.19698 0.87512 0.93654 0.93135 1.22045 0.99015 0.94992 1.00118 1.23486 0.97503 0.96914 0.98600 1.21396 1.01869 0.93742 0.96490 1.22456 0.97338 0.98797 0.97067 1.21304 0.99246 0.95426 0.96959 1.20244 1.02191 0.91929 1.05427 1.20860 0.98988 0.96623 0.99894 0.90754 0.88362 0.86469 0.77058 0.93819 0.93439 0.86043 0.89829 0.89793 0.90574 0.89448 0.91419 0.90787 0.87913 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.67 10.97 21.82 0.24 -46.43 16 2 C 0.03 1.67 5.13 85.23 0.44 2.11 16 3 Si 0.98 40.60 29.60 68.60 2.03 42.63 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.51 -28.90 9.03 23.38 0.21 -28.69 16 8 H 0.07 3.79 7.91 -2.91 -0.02 3.77 16 9 C 0.04 2.02 5.57 -21.27 -0.12 1.90 16 10 C -0.19 -9.96 9.74 22.48 0.22 -9.75 16 11 C -0.16 -7.43 9.82 22.15 0.22 -7.21 16 12 C 0.11 4.80 6.67 38.67 0.26 5.06 16 13 N -0.75 -25.88 5.69 -342.71 -1.95 -27.83 16 14 C 0.18 5.61 5.32 85.63 0.46 6.07 16 15 C -0.16 -3.83 5.53 -15.88 -0.09 -3.92 16 16 C -0.15 -3.06 10.59 26.26 0.28 -2.78 16 17 C -0.10 -1.51 6.81 30.53 0.21 -1.30 16 18 C -0.12 -1.75 7.19 31.71 0.23 -1.52 16 19 C -0.09 -1.81 6.76 30.53 0.21 -1.60 16 20 C -0.18 -8.53 9.23 22.15 0.20 -8.32 16 21 C -0.14 -7.95 8.64 22.48 0.19 -7.75 16 22 H 0.28 14.18 8.30 -92.71 -0.77 13.41 16 23 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 24 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 25 H 0.40 12.14 8.46 -92.71 -0.78 11.36 16 26 H 0.04 1.42 7.92 -2.39 -0.02 1.40 16 27 H 0.05 1.50 7.91 -2.39 -0.02 1.48 16 28 H 0.12 2.57 8.06 -2.91 -0.02 2.54 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.10 4.55 6.68 -2.91 -0.02 4.53 16 36 H 0.10 5.76 6.16 -2.91 -0.02 5.74 16 Total: -1.00 -62.23 299.96 3.51 -58.71 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.28 Total: 30.63 kcal Atomic # 6 Polarization: -60.62 SS G_CDS: 2.91 Total: -57.71 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -1.71 Total: -74.26 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -62.23 3.51 -58.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401175776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.861 kcal (2) G-P(sol) polarization free energy of solvation -62.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds