Wall clock time and date at job start Mon Mar 30 2020 05:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 5 5 N 1.31394 * 125.15857 * 60.02199 * 4 2 1 6 6 N 1.40455 * 107.18168 * 180.02562 * 5 4 2 7 7 H 0.96999 * 127.01692 * 180.02562 * 6 5 4 8 8 C 1.37024 * 105.96839 * 0.02562 * 6 5 4 9 9 C 1.40373 * 126.31783 * 180.02562 * 8 6 5 10 10 H 1.08001 * 119.99826 * 179.97438 * 9 8 6 11 11 C 1.40268 * 119.99924 * 359.97438 * 9 8 6 12 12 N 1.30638 * 120.00099 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99828 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47238 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47184 * 120.00076 * 13 11 9 16 16 H 1.48511 * 109.46936 * 239.99934 * 13 11 9 17 17 N 1.32230 * 125.15667 * 239.72268 * 4 2 1 18 18 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 19 19 C 1.38229 * 120.00228 * 299.73439 * 18 2 1 20 20 C 1.38235 * 119.99898 * 179.81158 * 19 18 2 21 21 C 1.38232 * 120.00199 * 0.38898 * 20 19 18 22 22 C 1.38240 * 119.99780 * 359.85925 * 21 20 19 23 23 C 1.38231 * 120.00211 * 359.95884 * 22 21 20 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00077 * 180.02562 * 12 11 9 28 28 H 1.07998 * 119.99907 * 359.97438 * 19 18 2 29 29 H 1.08002 * 120.00022 * 180.22485 * 20 19 18 30 30 H 1.07998 * 120.00604 * 179.83486 * 21 20 19 31 31 H 1.07997 * 119.99862 * 179.97438 * 22 21 20 32 32 H 1.08002 * 120.00211 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7784 -1.9624 1.5379 6 7 2.4274 -2.2307 2.7543 7 1 2.4303 -3.0691 3.2422 8 6 3.0558 -1.0665 3.1112 9 6 3.8326 -0.8600 4.2620 10 1 4.2837 0.1045 4.4431 11 6 4.0231 -1.9063 5.1766 12 7 3.4771 -3.0727 4.9577 13 14 5.0575 -1.6317 6.7076 14 1 5.5601 -0.2344 6.7214 15 1 4.2275 -1.8715 7.9154 16 1 6.2078 -2.5710 6.7029 17 7 2.8000 -0.1700 2.1616 18 6 2.0324 -0.7105 -1.2304 19 6 1.7031 -2.0355 -1.4463 20 6 2.1607 -2.6860 -2.5770 21 6 2.9543 -2.0138 -3.4876 22 6 3.2879 -0.6902 -3.2690 23 6 2.8272 -0.0386 -2.1403 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.6085 -3.7962 5.5904 28 1 1.0860 -2.5617 -0.7331 29 1 1.9004 -3.7202 -2.7475 30 1 3.3141 -2.5228 -4.3696 31 1 3.9083 -0.1652 -3.9802 32 1 3.0875 0.9956 -1.9698 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405654926.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:38 Heat of formation + Delta-G solvation = 77.280581 kcal Electronic energy + Delta-G solvation = -16597.415109 eV Core-core repulsion = 13944.283424 eV Total energy + Delta-G solvation = -2653.131685 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97056 -38.77316 -34.64986 -33.56489 -30.55598 -30.18389 -29.52819 -28.60885 -25.94685 -23.93648 -22.13760 -21.45060 -20.29080 -18.34469 -17.68424 -16.38105 -15.43304 -15.20245 -14.85194 -14.40788 -13.66873 -13.52326 -13.30918 -13.02448 -12.83661 -12.40041 -11.89202 -11.72496 -11.45307 -11.41791 -11.24264 -10.97168 -10.59328 -10.39787 -10.33506 -9.81933 -9.65642 -8.53574 -8.33961 -8.21477 -8.18512 -7.93504 -7.14863 -4.87771 1.72393 1.79733 2.81327 2.97410 3.05660 3.47578 3.76191 4.09542 4.25631 4.75399 5.10487 5.20316 5.29418 5.35029 5.50768 5.53570 5.77847 5.87197 5.95265 5.97827 6.22889 6.32186 6.40334 6.47199 6.59274 6.81092 6.87721 6.92671 6.96117 7.17248 7.38571 7.61319 8.06221 8.22358 8.48784 8.55450 9.40030 9.91333 10.14826 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.036459 B = 0.005556 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.796695 B = 5038.038509 C = 5162.034164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.047 3.953 3 H 0.090 0.910 4 C 0.220 3.780 5 N -0.401 5.401 6 N -0.507 5.507 7 H 0.439 0.561 8 C 0.411 3.589 9 C -0.427 4.427 10 H 0.103 0.897 11 C 0.072 3.928 12 N -0.836 5.836 13 Si 0.943 3.057 14 H -0.257 1.257 15 H -0.272 1.272 16 H -0.272 1.272 17 N -0.629 5.629 18 C -0.063 4.063 19 C -0.091 4.091 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.115 4.115 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.292 0.708 28 H 0.133 0.867 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 1.208 -8.252 8.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.026 3.974 3 H 0.109 0.891 4 C -0.064 4.064 5 N -0.236 5.236 6 N -0.233 5.233 7 H 0.293 0.707 8 C 0.157 3.843 9 C -0.468 4.468 10 H 0.121 0.879 11 C -0.144 4.144 12 N -0.469 5.469 13 Si 0.767 3.233 14 H -0.180 1.180 15 H -0.197 1.197 16 H -0.197 1.197 17 N -0.367 5.367 18 C -0.064 4.064 19 C -0.109 4.109 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.133 4.133 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.150 0.850 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.923 0.864 -8.630 8.884 hybrid contribution 0.659 -0.674 1.232 1.552 sum -1.264 0.190 -7.397 7.507 Atomic orbital electron populations 1.21755 0.93613 1.02486 1.01226 1.18246 0.95208 0.97602 0.86370 0.89133 1.23048 0.96957 0.90419 0.95957 1.77473 1.26681 1.16923 1.02547 1.48668 1.42475 1.14478 1.17644 0.70702 1.20778 0.89761 0.81226 0.92571 1.18712 1.27371 0.99583 1.01167 0.87934 1.26047 0.94566 0.93598 1.00228 1.68751 1.38139 1.03145 1.36853 0.85666 0.78959 0.79982 0.78684 1.17998 1.19665 1.19682 1.70692 1.26835 1.32992 1.06212 1.19827 0.97015 0.94524 0.95012 1.21237 0.99113 0.94153 0.96429 1.21113 0.98894 0.99592 0.94977 1.21041 0.99447 0.94964 0.99472 1.21009 1.00791 0.95052 0.97842 1.21064 0.97796 1.00019 0.94399 0.92363 0.92614 0.91990 0.89664 0.84960 0.86614 0.86809 0.86598 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.99 37.16 0.33 -1.88 16 2 C 0.05 0.91 3.04 -92.92 -0.28 0.63 16 3 H 0.09 1.69 7.88 -51.93 -0.41 1.28 16 4 C 0.22 5.46 6.51 -157.16 -1.02 4.44 16 5 N -0.40 -10.33 11.29 32.35 0.37 -9.96 16 6 N -0.51 -13.85 7.16 31.11 0.22 -13.62 16 7 H 0.44 11.69 6.38 -182.33 -1.16 10.53 16 8 C 0.41 11.62 7.67 -155.87 -1.20 10.42 16 9 C -0.43 -11.38 9.47 -38.02 -0.36 -11.74 16 10 H 0.10 2.64 7.85 -52.49 -0.41 2.23 16 11 C 0.07 1.74 5.50 -17.30 -0.10 1.65 16 12 N -0.84 -20.34 10.72 55.56 0.60 -19.75 16 13 Si 0.94 18.03 29.56 -169.99 -5.03 13.00 16 14 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 15 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 16 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 17 N -0.63 -17.42 11.24 -10.11 -0.11 -17.54 16 18 C -0.06 -1.14 4.77 -104.62 -0.50 -1.64 16 19 C -0.09 -1.64 8.52 -39.59 -0.34 -1.98 16 20 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 21 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 22 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 23 C -0.11 -1.84 9.67 -39.58 -0.38 -2.22 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.06 7.40 -51.93 -0.38 0.68 16 27 H 0.29 6.36 8.29 -40.82 -0.34 6.02 16 28 H 0.13 2.53 6.62 -52.49 -0.35 2.18 16 29 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.71 7.95 -52.49 -0.42 1.29 16 LS Contribution 278.41 15.07 4.20 4.20 Total: -1.00 -29.51 278.41 -9.18 -38.68 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -4.38 Total: 14.17 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -5.03 Total: -9.19 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 1.07 Total: -60.87 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.51 -9.18 -38.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405654926.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.964 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds