Wall clock time and date at job start Mon Mar 30 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47171 * 2 1 4 4 C 1.50704 * 109.46718 * 240.00272 * 2 1 3 5 5 N 1.31398 * 125.15778 * 300.01928 * 4 2 1 6 6 N 1.40464 * 107.17796 * 180.02562 * 5 4 2 7 7 H 0.97000 * 127.01288 * 179.97438 * 6 5 4 8 8 C 1.37026 * 105.96519 * 0.02562 * 6 5 4 9 9 C 1.40375 * 126.30998 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99302 * 180.02562 * 9 8 6 11 11 C 1.40266 * 120.00157 * 0.02566 * 9 8 6 12 12 N 1.30642 * 120.00287 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99800 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47414 * 59.99665 * 13 11 9 15 15 H 1.48501 * 109.47053 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47149 * 299.99874 * 13 11 9 17 17 N 1.32231 * 125.15732 * 120.33816 * 4 2 1 18 18 C 1.50695 * 109.47307 * 120.00445 * 2 1 3 19 19 C 1.38239 * 120.00237 * 59.72522 * 18 2 1 20 20 C 1.38233 * 119.99950 * 179.79476 * 19 18 2 21 21 C 1.38233 * 120.00288 * 0.43140 * 20 19 18 22 22 C 1.38237 * 119.99548 * 359.82199 * 21 20 19 23 23 C 1.38231 * 120.00305 * 359.97199 * 22 21 20 24 24 H 1.09003 * 109.46819 * 299.99917 * 1 2 3 25 25 H 1.09001 * 109.47032 * 59.99593 * 1 2 3 26 26 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 27 27 H 0.96998 * 120.00234 * 179.97438 * 12 11 9 28 28 H 1.08001 * 119.99780 * 359.97438 * 19 18 2 29 29 H 1.08005 * 119.99656 * 180.27994 * 20 19 18 30 30 H 1.07993 * 120.00227 * 179.84055 * 21 20 19 31 31 H 1.08003 * 119.99571 * 179.97438 * 22 21 20 32 32 H 1.07996 * 119.99927 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 7 1.7777 -1.9622 -1.5385 6 7 2.4280 -2.2308 -2.7542 7 1 2.4307 -3.0692 -3.2421 8 6 3.0586 -1.0674 -3.1094 9 6 3.8365 -0.8612 -4.2596 10 1 4.2894 0.1026 -4.4396 11 6 4.0256 -1.9070 -5.1751 12 7 3.4782 -3.0730 -4.9572 13 14 5.0614 -1.6328 -6.7053 14 1 6.4401 -1.2502 -6.3079 15 1 5.1061 -2.8842 -7.5035 16 1 4.4618 -0.5462 -7.5207 17 7 2.8009 -0.1703 -2.1612 18 6 2.0324 -0.7105 1.2303 19 6 1.6938 -2.0323 1.4519 20 6 2.1582 -2.6852 2.5784 21 6 2.9537 -2.0138 3.4879 22 6 3.2880 -0.6904 3.2689 23 6 2.8272 -0.0387 2.1403 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.6087 -3.7960 -5.5905 28 1 1.0689 -2.5557 0.7435 29 1 1.8973 -3.7193 2.7492 30 1 3.3144 -2.5231 4.3692 31 1 3.9092 -0.1657 3.9797 32 1 3.0880 0.9952 1.9695 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405654931.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:41 Heat of formation + Delta-G solvation = 77.254282 kcal Electronic energy + Delta-G solvation = -16596.503860 eV Core-core repulsion = 13943.371035 eV Total energy + Delta-G solvation = -2653.132825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96711 -38.77384 -34.64882 -33.56388 -30.55586 -30.18140 -29.52859 -28.60471 -25.94351 -23.93832 -22.13664 -21.45029 -20.28836 -18.34239 -17.68072 -16.38160 -15.42760 -15.20611 -14.84984 -14.40980 -13.66592 -13.52173 -13.31039 -13.02567 -12.83276 -12.39650 -11.89558 -11.72679 -11.43292 -11.40021 -11.24175 -10.97877 -10.61945 -10.39665 -10.36503 -9.82943 -9.62732 -8.53603 -8.33845 -8.21228 -8.18361 -7.93392 -7.14379 -4.87618 1.72467 1.79662 2.85658 2.96909 3.01275 3.48239 3.76107 4.09632 4.25933 4.75548 5.10517 5.20352 5.29454 5.35138 5.50881 5.53488 5.77937 5.87190 5.95054 5.97718 6.22976 6.32188 6.40360 6.47102 6.59250 6.81088 6.87751 6.92792 6.96152 7.17222 7.38520 7.61287 8.05867 8.22284 8.48925 8.55462 9.40267 9.91715 10.15059 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.036445 B = 0.005555 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.088579 B = 5038.841888 C = 5162.437714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.047 3.953 3 H 0.090 0.910 4 C 0.220 3.780 5 N -0.401 5.401 6 N -0.507 5.507 7 H 0.439 0.561 8 C 0.411 3.589 9 C -0.428 4.428 10 H 0.102 0.898 11 C 0.073 3.927 12 N -0.836 5.836 13 Si 0.944 3.056 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.261 1.261 17 N -0.630 5.630 18 C -0.062 4.062 19 C -0.091 4.091 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.115 4.115 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.293 0.707 28 H 0.132 0.868 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 1.196 8.249 8.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.026 3.974 3 H 0.109 0.891 4 C -0.064 4.064 5 N -0.236 5.236 6 N -0.233 5.233 7 H 0.293 0.707 8 C 0.157 3.843 9 C -0.469 4.469 10 H 0.120 0.880 11 C -0.144 4.144 12 N -0.469 5.469 13 Si 0.768 3.232 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.186 1.186 17 N -0.368 5.368 18 C -0.063 4.063 19 C -0.109 4.109 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.133 4.133 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.150 0.850 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.931 0.844 8.624 8.878 hybrid contribution 0.667 -0.654 -1.232 1.547 sum -1.264 0.190 7.392 7.501 Atomic orbital electron populations 1.21757 0.93617 1.02489 1.01227 1.18246 0.95202 0.97599 0.86378 0.89134 1.23049 0.96965 0.90422 0.95944 1.77479 1.26656 1.16921 1.02562 1.48669 1.42365 1.14521 1.17732 0.70706 1.20756 0.89742 0.81233 0.92552 1.18633 1.27443 0.99612 1.01230 0.88026 1.26042 0.94557 0.93588 1.00207 1.68740 1.38069 1.03162 1.36937 0.85754 0.80051 0.78615 0.78784 1.18600 1.20217 1.18576 1.70686 1.26829 1.32951 1.06292 1.19825 0.96987 0.94550 0.94980 1.21230 0.99105 0.94168 0.96437 1.21112 0.98845 0.99567 0.95029 1.21039 0.99471 0.94967 0.99460 1.21010 1.00766 0.95055 0.97845 1.21060 0.97853 1.00004 0.94379 0.92610 0.92367 0.91985 0.89554 0.85000 0.86612 0.86808 0.86597 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.98 37.16 0.33 -1.88 16 2 C 0.05 0.91 3.04 -92.92 -0.28 0.63 16 3 H 0.09 1.69 7.88 -51.93 -0.41 1.28 16 4 C 0.22 5.47 6.51 -157.15 -1.02 4.44 16 5 N -0.40 -10.33 11.33 32.36 0.37 -9.97 16 6 N -0.51 -13.86 7.16 31.10 0.22 -13.63 16 7 H 0.44 11.69 6.38 -182.32 -1.16 10.53 16 8 C 0.41 11.64 7.67 -155.88 -1.20 10.44 16 9 C -0.43 -11.40 9.47 -38.02 -0.36 -11.76 16 10 H 0.10 2.60 7.85 -52.49 -0.41 2.19 16 11 C 0.07 1.76 5.50 -17.30 -0.10 1.66 16 12 N -0.84 -20.36 10.72 55.56 0.60 -19.76 16 13 Si 0.94 18.04 29.56 -169.99 -5.03 13.01 16 14 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 15 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 16 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 17 N -0.63 -17.44 11.24 -10.11 -0.11 -17.55 16 18 C -0.06 -1.14 4.77 -104.63 -0.50 -1.63 16 19 C -0.09 -1.64 8.52 -39.58 -0.34 -1.98 16 20 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 21 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 22 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 23 C -0.11 -1.84 9.67 -39.58 -0.38 -2.23 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.06 7.37 -51.93 -0.38 0.68 16 27 H 0.29 6.42 8.29 -40.82 -0.34 6.09 16 28 H 0.13 2.51 6.64 -52.49 -0.35 2.16 16 29 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 30 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.12 1.71 7.95 -52.49 -0.42 1.29 16 LS Contribution 278.43 15.07 4.20 4.20 Total: -1.00 -29.48 278.43 -9.17 -38.65 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -4.38 Total: 14.22 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -5.04 Total: -9.17 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 1.07 Total: -60.91 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.48 -9.17 -38.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405654931.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.906 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds