Wall clock time and date at job start Mon Mar 30 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47171 * 2 1 4 4 C 1.50704 * 109.46718 * 240.00272 * 2 1 3 5 5 N 1.31398 * 125.15778 * 300.01928 * 4 2 1 6 6 N 1.40464 * 107.17796 * 180.02562 * 5 4 2 7 7 H 0.97000 * 127.01288 * 179.97438 * 6 5 4 8 8 C 1.37026 * 105.96519 * 0.02562 * 6 5 4 9 9 C 1.40375 * 126.30998 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99302 * 180.02562 * 9 8 6 11 11 C 1.40266 * 120.00157 * 0.02566 * 9 8 6 12 12 N 1.30642 * 120.00287 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99800 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47414 * 59.99665 * 13 11 9 15 15 H 1.48501 * 109.47053 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47149 * 299.99874 * 13 11 9 17 17 N 1.32231 * 125.15732 * 120.33816 * 4 2 1 18 18 C 1.50695 * 109.47307 * 120.00445 * 2 1 3 19 19 C 1.38239 * 120.00237 * 59.72522 * 18 2 1 20 20 C 1.38233 * 119.99950 * 179.79476 * 19 18 2 21 21 C 1.38233 * 120.00288 * 0.43140 * 20 19 18 22 22 C 1.38237 * 119.99548 * 359.82199 * 21 20 19 23 23 C 1.38231 * 120.00305 * 359.97199 * 22 21 20 24 24 H 1.09003 * 109.46819 * 299.99917 * 1 2 3 25 25 H 1.09001 * 109.47032 * 59.99593 * 1 2 3 26 26 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 27 27 H 0.96998 * 120.00234 * 179.97438 * 12 11 9 28 28 H 1.08001 * 119.99780 * 359.97438 * 19 18 2 29 29 H 1.08005 * 119.99656 * 180.27994 * 20 19 18 30 30 H 1.07993 * 120.00227 * 179.84055 * 21 20 19 31 31 H 1.08003 * 119.99571 * 179.97438 * 22 21 20 32 32 H 1.07996 * 119.99927 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 7 1.7777 -1.9622 -1.5385 6 7 2.4280 -2.2308 -2.7542 7 1 2.4307 -3.0692 -3.2421 8 6 3.0586 -1.0674 -3.1094 9 6 3.8365 -0.8612 -4.2596 10 1 4.2894 0.1026 -4.4396 11 6 4.0256 -1.9070 -5.1751 12 7 3.4782 -3.0730 -4.9572 13 14 5.0614 -1.6328 -6.7053 14 1 6.4401 -1.2502 -6.3079 15 1 5.1061 -2.8842 -7.5035 16 1 4.4618 -0.5462 -7.5207 17 7 2.8009 -0.1703 -2.1612 18 6 2.0324 -0.7105 1.2303 19 6 1.6938 -2.0323 1.4519 20 6 2.1582 -2.6852 2.5784 21 6 2.9537 -2.0138 3.4879 22 6 3.2880 -0.6904 3.2689 23 6 2.8272 -0.0387 2.1403 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.6087 -3.7960 -5.5905 28 1 1.0689 -2.5557 0.7435 29 1 1.8973 -3.7193 2.7492 30 1 3.3144 -2.5231 4.3692 31 1 3.9092 -0.1657 3.9797 32 1 3.0880 0.9952 1.9695 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405654931.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:40 Heat of formation + Delta-G solvation = 60.634490 kcal Electronic energy + Delta-G solvation = -16597.224548 eV Core-core repulsion = 13943.371035 eV Total energy + Delta-G solvation = -2653.853514 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.88324 -40.09085 -36.31067 -35.26385 -32.21709 -31.75399 -31.28950 -30.04826 -27.91653 -25.41188 -23.36727 -23.06511 -22.04718 -20.12200 -19.60540 -17.69350 -17.33428 -16.86722 -16.16192 -15.82581 -15.49178 -15.08691 -14.83666 -14.43114 -14.11954 -13.79846 -13.54538 -13.40311 -13.03348 -12.94649 -12.69697 -12.36143 -12.09503 -11.89048 -11.70513 -11.68159 -11.38078 -10.27834 -10.23977 -9.96190 -9.74004 -9.55713 -9.00113 -6.90512 0.49199 0.58040 1.17775 1.40231 1.55852 1.68822 2.15335 2.32750 2.73308 2.99573 3.27799 3.69032 3.87440 4.11605 4.21498 4.35370 4.38237 4.43663 4.68690 4.75318 4.82078 4.88921 5.03564 5.06305 5.20340 5.22462 5.30056 5.62358 5.63338 5.67798 5.84931 6.05525 6.19753 6.22587 6.53463 6.58707 7.33955 8.03632 8.16745 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.036445 B = 0.005555 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.088579 B = 5038.841888 C = 5162.437714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.046 3.954 3 H 0.095 0.905 4 C 0.220 3.780 5 N -0.413 5.413 6 N -0.523 5.523 7 H 0.436 0.564 8 C 0.382 3.618 9 C -0.460 4.460 10 H 0.102 0.898 11 C 0.038 3.962 12 N -0.851 5.851 13 Si 1.023 2.977 14 H -0.257 1.257 15 H -0.261 1.261 16 H -0.255 1.255 17 N -0.661 5.661 18 C -0.085 4.085 19 C -0.114 4.114 20 C -0.135 4.135 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.124 4.124 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.306 0.694 28 H 0.109 0.891 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 1.282 8.929 9.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.025 3.975 3 H 0.113 0.887 4 C -0.064 4.064 5 N -0.248 5.248 6 N -0.249 5.249 7 H 0.290 0.710 8 C 0.129 3.871 9 C -0.501 4.501 10 H 0.120 0.880 11 C -0.178 4.178 12 N -0.483 5.483 13 Si 0.841 3.159 14 H -0.181 1.181 15 H -0.185 1.185 16 H -0.179 1.179 17 N -0.400 5.400 18 C -0.086 4.086 19 C -0.132 4.132 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.142 4.142 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.152 0.848 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.839 0.912 9.334 9.416 hybrid contribution 0.327 -0.733 -1.392 1.607 sum -0.512 0.179 7.942 7.960 Atomic orbital electron populations 1.21693 0.91806 1.02191 1.02467 1.18447 0.96757 0.97299 0.85039 0.88684 1.24018 0.95477 0.90201 0.96666 1.77458 1.27289 1.17721 1.02332 1.48694 1.43311 1.14357 1.18497 0.71019 1.21300 0.90504 0.81804 0.93472 1.19000 1.28346 1.00770 1.01942 0.87993 1.27110 0.95130 0.92578 1.02957 1.68748 1.37601 1.03910 1.38024 0.84616 0.77934 0.79190 0.74149 1.18087 1.18527 1.17941 1.70705 1.28454 1.33565 1.07301 1.19783 0.98766 0.94928 0.95124 1.21177 1.00176 0.94462 0.97397 1.21386 0.98835 1.00564 0.94481 1.21472 0.98008 0.95021 0.99881 1.21436 1.00093 0.95255 0.97494 1.21316 0.97374 1.00865 0.94681 0.89229 0.93117 0.93039 0.88170 0.87262 0.84812 0.83320 0.83183 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.16 8.98 71.98 0.65 -3.52 16 2 C 0.05 1.81 3.04 -12.28 -0.04 1.77 16 3 H 0.09 3.59 7.88 -2.39 -0.02 3.57 16 4 C 0.22 11.32 6.51 138.74 0.90 12.22 16 5 N -0.41 -22.20 11.33 -51.54 -0.58 -22.79 16 6 N -0.52 -29.70 7.16 -55.50 -0.40 -30.10 16 7 H 0.44 24.14 6.38 -213.08 -1.36 22.78 16 8 C 0.38 22.39 7.67 133.83 1.03 23.42 16 9 C -0.46 -25.03 9.47 23.28 0.22 -24.81 16 10 H 0.10 5.35 7.85 -2.91 -0.02 5.33 16 11 C 0.04 1.80 5.50 85.36 0.47 2.27 16 12 N -0.85 -41.46 10.72 21.88 0.23 -41.22 16 13 Si 1.02 35.84 29.56 68.60 2.03 37.87 16 14 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 15 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 16 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 17 N -0.66 -37.95 11.24 -185.90 -2.09 -40.04 16 18 C -0.09 -3.08 4.77 -19.87 -0.09 -3.18 16 19 C -0.11 -4.12 8.52 22.27 0.19 -3.93 16 20 C -0.13 -4.01 10.05 22.27 0.22 -3.78 16 21 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 22 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 23 C -0.12 -3.80 9.67 22.27 0.22 -3.58 16 24 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.82 7.37 -2.39 -0.02 1.80 16 27 H 0.31 13.16 8.29 -92.71 -0.77 12.39 16 28 H 0.11 4.37 6.64 -2.91 -0.02 4.35 16 29 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.13 3.59 7.95 -2.91 -0.02 3.57 16 Total: -1.00 -65.68 278.43 3.18 -62.49 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -0.22 Total: 42.82 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 4.21 Total: -9.03 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -2.84 Total: -134.15 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -65.68 3.18 -62.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405654931.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.127 kcal (2) G-P(sol) polarization free energy of solvation -65.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds