Wall clock time and date at job start Mon Mar 30 2020 05:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47301 * 2 1 4 4 C 1.34296 * 125.07554 * 125.00070 * 3 2 1 5 5 C 1.39266 * 107.66463 * 180.02562 * 4 3 2 6 6 C 1.41282 * 126.94651 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00286 * 198.38938 * 6 5 4 8 8 C 1.39803 * 119.99808 * 18.39177 * 6 5 4 9 9 N 1.30974 * 120.00010 * 197.55306 * 8 6 5 10 10 Si 1.86799 * 119.99955 * 17.54871 * 8 6 5 11 11 H 1.48500 * 109.47628 * 270.00462 * 10 8 6 12 12 H 1.48502 * 109.47196 * 30.00468 * 10 8 6 13 13 H 1.48501 * 109.47280 * 149.99880 * 10 8 6 14 14 C 1.47129 * 106.11183 * 0.24170 * 5 4 3 15 15 C 1.48131 * 126.51190 * 179.73439 * 14 5 4 16 16 C 1.39910 * 120.54877 * 145.00085 * 15 14 5 17 17 C 1.38378 * 118.29730 * 179.97438 * 16 15 14 18 18 C 1.38344 * 119.29984 * 359.97438 * 17 16 15 19 19 N 1.31901 * 121.05927 * 359.97438 * 18 17 16 20 20 C 1.31725 * 121.86239 * 359.73392 * 19 18 17 21 21 N 1.31316 * 106.97324 * 359.59050 * 14 5 4 22 22 H 1.09000 * 109.47702 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47308 * 300.00124 * 1 2 3 24 24 H 1.09004 * 109.47430 * 59.99770 * 1 2 3 25 25 H 1.09010 * 109.47161 * 240.00085 * 2 1 3 26 26 H 1.08997 * 109.47232 * 120.00526 * 2 1 3 27 27 H 1.08002 * 126.17003 * 0.02562 * 4 3 2 28 28 H 0.97004 * 120.00374 * 355.33340 * 9 8 6 29 29 H 1.08000 * 120.85046 * 359.95405 * 16 15 14 30 30 H 1.08004 * 120.34744 * 180.02562 * 17 16 15 31 31 H 1.07999 * 119.46816 * 179.97438 * 18 17 16 32 32 H 1.08007 * 119.70957 * 180.28486 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8699 1.8986 0.9003 5 6 3.0871 3.2313 0.5593 6 6 3.9145 4.1566 1.2341 7 1 3.7851 5.2162 1.0705 8 6 4.9009 3.7004 2.1136 9 7 5.4294 4.5206 2.9872 10 14 5.4648 1.9210 2.0428 11 1 4.6254 1.0990 2.9512 12 1 5.3323 1.4146 0.6531 13 1 6.8851 1.8345 2.4677 14 6 2.2757 3.4828 -0.6420 15 6 2.1683 4.7621 -1.3810 16 6 2.0254 4.7695 -2.7728 17 6 1.9287 5.9910 -3.4158 18 6 1.9754 7.1547 -2.6692 19 7 2.1099 7.1168 -1.3576 20 6 2.2001 5.9787 -0.7005 21 7 1.6672 2.3570 -0.9362 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.3075 1.3756 1.7378 28 1 5.1865 5.4597 2.9797 29 1 1.9917 3.8455 -3.3310 30 1 1.8171 6.0353 -4.4892 31 1 1.9006 8.1095 -3.1683 32 1 2.3048 5.9882 0.3745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409436947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:26 Heat of formation + Delta-G solvation = 97.639279 kcal Electronic energy + Delta-G solvation = -16757.053541 eV Core-core repulsion = 14104.804675 eV Total energy + Delta-G solvation = -2652.248866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.84898 -39.04736 -34.26019 -33.28987 -31.99026 -31.07573 -29.55030 -28.40717 -24.41872 -23.94675 -22.95709 -21.76598 -20.23327 -18.76756 -17.72675 -16.52962 -16.19601 -15.54024 -14.94087 -14.37312 -13.94591 -13.49848 -13.43389 -13.24779 -12.92230 -12.57371 -12.40326 -12.16223 -11.73100 -11.56908 -11.13333 -11.10642 -10.76983 -10.09099 -9.69452 -9.46565 -9.36437 -9.06205 -9.00040 -8.83592 -7.84313 -7.45823 -7.04303 -4.19177 1.45369 1.76981 3.02125 3.12274 3.27713 3.42871 3.56017 3.80281 4.11262 4.46200 4.92057 5.06028 5.20594 5.28865 5.34238 5.40531 5.48132 5.51416 5.60554 5.74569 5.93540 6.02279 6.07558 6.26103 6.32244 6.52559 6.65905 6.86392 7.12297 7.17953 7.42314 7.77040 8.03814 8.45834 8.48265 8.52110 8.86349 8.98935 10.25882 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.010325 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.302925 B = 2711.299313 C = 4102.924406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 N -0.363 5.363 4 C -0.149 4.149 5 C 0.006 3.994 6 C -0.502 4.502 7 H 0.080 0.920 8 C 0.041 3.959 9 N -0.838 5.838 10 Si 1.070 2.930 11 H -0.282 1.282 12 H -0.267 1.267 13 H -0.291 1.291 14 C 0.022 3.978 15 C -0.011 4.011 16 C -0.074 4.074 17 C -0.177 4.177 18 C 0.072 3.928 19 N -0.485 5.485 20 C 0.114 3.886 21 N -0.287 5.287 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.151 0.849 28 H 0.283 0.717 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.730 -4.501 -7.234 10.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 N -0.153 5.153 4 C -0.287 4.287 5 C -0.004 4.004 6 C -0.534 4.534 7 H 0.098 0.902 8 C -0.176 4.176 9 N -0.463 5.463 10 Si 0.898 3.102 11 H -0.210 1.210 12 H -0.192 1.192 13 H -0.218 1.218 14 C -0.143 4.143 15 C -0.015 4.015 16 C -0.101 4.101 17 C -0.196 4.196 18 C -0.085 4.085 19 N -0.193 5.193 20 C -0.045 4.045 21 N -0.113 5.113 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.168 0.832 28 H 0.094 0.906 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.164 0.836 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.458 -5.458 -6.719 10.234 hybrid contribution -0.420 0.599 -0.557 0.920 sum -5.878 -4.859 -7.277 10.541 Atomic orbital electron populations 1.22047 0.94976 1.01630 1.03298 1.21339 0.95080 0.79568 1.02329 1.47230 1.37339 1.08302 1.22383 1.22176 1.07669 0.97120 1.01752 1.19138 0.97524 0.91796 0.91980 1.19874 1.15287 0.94601 1.23663 0.90175 1.26874 0.93119 1.07189 0.90370 1.70593 1.41345 1.06872 1.27520 0.83653 0.75658 0.73274 0.77574 1.20992 1.19179 1.21829 1.21428 1.03910 0.91369 0.97572 1.18753 0.98534 0.91775 0.92479 1.21612 0.96626 0.98172 0.93675 1.21926 1.03531 0.93417 1.00775 1.22612 0.97890 0.97881 0.90137 1.67662 1.12093 1.29903 1.09685 1.23094 0.94204 0.86245 1.00938 1.76517 1.23604 0.97256 1.13873 0.91783 0.92302 0.91512 0.91342 0.89751 0.83175 0.90586 0.85230 0.85463 0.83568 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 10.07 37.16 0.37 -1.80 16 2 C 0.14 2.16 7.17 -4.05 -0.03 2.14 16 3 N -0.36 -7.72 3.63 -60.46 -0.22 -7.94 16 4 C -0.15 -3.49 8.85 -16.09 -0.14 -3.63 16 5 C 0.01 0.14 5.63 -104.75 -0.59 -0.45 16 6 C -0.50 -13.45 9.21 -37.84 -0.35 -13.80 16 7 H 0.08 2.19 5.71 -52.49 -0.30 1.89 16 8 C 0.04 1.09 5.50 -17.33 -0.10 0.99 16 9 N -0.84 -23.01 13.66 55.54 0.76 -22.25 16 10 Si 1.07 24.19 24.96 -169.99 -4.24 19.95 16 11 H -0.28 -5.93 6.58 56.52 0.37 -5.55 16 12 H -0.27 -6.00 6.74 56.52 0.38 -5.62 16 13 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.02 0.52 6.97 -80.42 -0.56 -0.04 16 15 C -0.01 -0.24 5.84 -104.76 -0.61 -0.85 16 16 C -0.07 -1.33 9.92 -38.90 -0.39 -1.71 16 17 C -0.18 -2.69 10.10 -39.49 -0.40 -3.09 16 18 C 0.07 1.16 11.17 -17.48 -0.20 0.96 16 19 N -0.49 -9.44 10.35 -12.93 -0.13 -9.57 16 20 C 0.11 2.41 10.03 -17.15 -0.17 2.24 16 21 N -0.29 -6.47 12.25 34.65 0.42 -6.05 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 25 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 26 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 27 H 0.15 3.36 4.28 -52.49 -0.22 3.14 16 28 H 0.28 7.63 8.73 -40.82 -0.36 7.27 16 29 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 31 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.16 3.63 6.12 -52.48 -0.32 3.31 16 LS Contribution 275.36 15.07 4.15 4.15 Total: -1.00 -29.91 275.36 -5.84 -35.76 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.42 Total: 5.01 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -3.16 Total: -19.05 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.83 Total: -45.82 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -4.24 Total: 19.95 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.91 -5.84 -35.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409436947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.395 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds