Wall clock time and date at job start Mon Mar 30 2020 05:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47301 * 2 1 4 4 C 1.34296 * 125.07554 * 125.00070 * 3 2 1 5 5 C 1.39266 * 107.66463 * 180.02562 * 4 3 2 6 6 C 1.41282 * 126.94651 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00286 * 198.38938 * 6 5 4 8 8 C 1.39803 * 119.99808 * 18.39177 * 6 5 4 9 9 N 1.30974 * 120.00010 * 197.55306 * 8 6 5 10 10 Si 1.86799 * 119.99955 * 17.54871 * 8 6 5 11 11 H 1.48500 * 109.47628 * 270.00462 * 10 8 6 12 12 H 1.48502 * 109.47196 * 30.00468 * 10 8 6 13 13 H 1.48501 * 109.47280 * 149.99880 * 10 8 6 14 14 C 1.47129 * 106.11183 * 0.24170 * 5 4 3 15 15 C 1.48131 * 126.51190 * 179.73439 * 14 5 4 16 16 C 1.39910 * 120.54877 * 145.00085 * 15 14 5 17 17 C 1.38378 * 118.29730 * 179.97438 * 16 15 14 18 18 C 1.38344 * 119.29984 * 359.97438 * 17 16 15 19 19 N 1.31901 * 121.05927 * 359.97438 * 18 17 16 20 20 C 1.31725 * 121.86239 * 359.73392 * 19 18 17 21 21 N 1.31316 * 106.97324 * 359.59050 * 14 5 4 22 22 H 1.09000 * 109.47702 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47308 * 300.00124 * 1 2 3 24 24 H 1.09004 * 109.47430 * 59.99770 * 1 2 3 25 25 H 1.09010 * 109.47161 * 240.00085 * 2 1 3 26 26 H 1.08997 * 109.47232 * 120.00526 * 2 1 3 27 27 H 1.08002 * 126.17003 * 0.02562 * 4 3 2 28 28 H 0.97004 * 120.00374 * 355.33340 * 9 8 6 29 29 H 1.08000 * 120.85046 * 359.95405 * 16 15 14 30 30 H 1.08004 * 120.34744 * 180.02562 * 17 16 15 31 31 H 1.07999 * 119.46816 * 179.97438 * 18 17 16 32 32 H 1.08007 * 119.70957 * 180.28486 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8699 1.8986 0.9003 5 6 3.0871 3.2313 0.5593 6 6 3.9145 4.1566 1.2341 7 1 3.7851 5.2162 1.0705 8 6 4.9009 3.7004 2.1136 9 7 5.4294 4.5206 2.9872 10 14 5.4648 1.9210 2.0428 11 1 4.6254 1.0990 2.9512 12 1 5.3323 1.4146 0.6531 13 1 6.8851 1.8345 2.4677 14 6 2.2757 3.4828 -0.6420 15 6 2.1683 4.7621 -1.3810 16 6 2.0254 4.7695 -2.7728 17 6 1.9287 5.9910 -3.4158 18 6 1.9754 7.1547 -2.6692 19 7 2.1099 7.1168 -1.3576 20 6 2.2001 5.9787 -0.7005 21 7 1.6672 2.3570 -0.9362 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.3075 1.3756 1.7378 28 1 5.1865 5.4597 2.9797 29 1 1.9917 3.8455 -3.3310 30 1 1.8171 6.0353 -4.4892 31 1 1.9006 8.1095 -3.1683 32 1 2.3048 5.9882 0.3745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409436947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:26 Heat of formation + Delta-G solvation = 77.943375 kcal Electronic energy + Delta-G solvation = -16757.907619 eV Core-core repulsion = 14104.804675 eV Total energy + Delta-G solvation = -2653.102944 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.50587 -40.58276 -35.90487 -35.02625 -33.42880 -32.47380 -31.40509 -29.93647 -26.23932 -25.35165 -24.43393 -23.18206 -22.02515 -20.41024 -19.64788 -18.03616 -17.71949 -17.01633 -16.38312 -15.88971 -15.50115 -15.25450 -14.98530 -14.81408 -14.39859 -14.09382 -14.00300 -13.62159 -13.16829 -12.85203 -12.80818 -12.53569 -12.25400 -11.88125 -11.41309 -11.28519 -10.98681 -10.88624 -10.48695 -10.31066 -9.61533 -9.26954 -9.02349 -6.19434 -0.01419 0.34356 1.22570 1.34816 1.46301 1.72058 1.94466 1.99585 2.28342 2.95727 3.25811 3.50282 3.75808 3.90833 4.03590 4.06733 4.14298 4.21488 4.27946 4.42337 4.59124 4.79837 4.81174 4.88382 5.00283 5.14098 5.16054 5.25519 5.44832 5.54299 5.72719 5.84345 6.22816 6.51355 6.63165 6.96282 7.04678 7.13827 8.22357 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.010325 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.302925 B = 2711.299313 C = 4102.924406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 N -0.362 5.362 4 C -0.132 4.132 5 C -0.036 4.036 6 C -0.523 4.523 7 H 0.053 0.947 8 C 0.000 4.000 9 N -0.870 5.870 10 Si 1.103 2.897 11 H -0.252 1.252 12 H -0.265 1.265 13 H -0.287 1.287 14 C 0.013 3.987 15 C -0.043 4.043 16 C -0.074 4.074 17 C -0.155 4.155 18 C 0.078 3.922 19 N -0.507 5.507 20 C 0.095 3.905 21 N -0.288 5.288 22 H 0.105 0.895 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.165 0.835 28 H 0.270 0.730 29 H 0.143 0.857 30 H 0.180 0.820 31 H 0.192 0.808 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -6.375 -9.693 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.002 3.998 3 N -0.151 5.151 4 C -0.273 4.273 5 C -0.047 4.047 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.209 4.209 9 N -0.498 5.498 10 Si 0.926 3.074 11 H -0.177 1.177 12 H -0.190 1.190 13 H -0.214 1.214 14 C -0.151 4.151 15 C -0.048 4.048 16 C -0.101 4.101 17 C -0.174 4.174 18 C -0.079 4.079 19 N -0.216 5.216 20 C -0.062 4.062 21 N -0.114 5.114 22 H 0.123 0.877 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.108 0.892 26 H 0.128 0.872 27 H 0.182 0.818 28 H 0.080 0.920 29 H 0.160 0.840 30 H 0.197 0.803 31 H 0.209 0.791 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.616 -7.354 -9.180 13.495 hybrid contribution -0.242 1.215 -0.015 1.239 sum -6.858 -6.139 -9.196 13.011 Atomic orbital electron populations 1.21992 0.93364 1.03869 1.01863 1.21930 0.96491 0.76705 1.04689 1.47800 1.36307 1.09979 1.21052 1.22450 1.06547 0.96565 1.01691 1.19347 0.98940 0.92869 0.93512 1.19843 1.16729 0.93882 1.25137 0.92839 1.28049 0.92861 1.10211 0.89815 1.70685 1.43267 1.06465 1.29352 0.83267 0.76033 0.69979 0.78116 1.17745 1.19001 1.21414 1.21783 1.03335 0.92622 0.97403 1.18853 1.01005 0.90729 0.94163 1.21864 0.95890 1.00164 0.92189 1.22431 1.00327 0.91563 1.03113 1.23452 0.95222 1.00379 0.88887 1.67647 1.12991 1.29109 1.11809 1.22697 0.96198 0.87318 1.00031 1.76466 1.23342 0.97269 1.14344 0.87685 0.93667 0.92971 0.89193 0.87196 0.81796 0.91978 0.83962 0.80309 0.79114 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 10.07 71.98 0.72 -2.93 16 2 C 0.12 3.37 7.17 86.38 0.62 3.99 16 3 N -0.36 -14.78 3.63 -345.20 -1.25 -16.03 16 4 C -0.13 -6.11 8.85 84.56 0.75 -5.37 16 5 C -0.04 -1.91 5.63 -19.95 -0.11 -2.02 16 6 C -0.52 -29.71 9.21 23.40 0.22 -29.50 16 7 H 0.05 3.22 5.71 -2.91 -0.02 3.20 16 8 C 0.00 -0.01 5.50 85.20 0.47 0.46 16 9 N -0.87 -50.38 13.66 21.81 0.30 -50.08 16 10 Si 1.10 48.76 24.96 68.60 1.71 50.47 16 11 H -0.25 -9.78 6.58 99.48 0.65 -9.13 16 12 H -0.27 -11.50 6.74 99.48 0.67 -10.83 16 13 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 14 C 0.01 0.63 6.97 44.19 0.31 0.93 16 15 C -0.04 -1.88 5.84 -19.95 -0.12 -2.00 16 16 C -0.07 -2.53 9.92 22.71 0.23 -2.31 16 17 C -0.16 -4.12 10.10 22.33 0.23 -3.89 16 18 C 0.08 2.28 11.17 84.71 0.95 3.23 16 19 N -0.51 -19.76 10.35 -194.82 -2.02 -21.77 16 20 C 0.10 4.23 10.03 85.00 0.85 5.08 16 21 N -0.29 -12.79 12.25 -44.29 -0.54 -13.34 16 22 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.40 8.13 -2.38 -0.02 1.38 16 25 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 26 H 0.11 2.50 8.04 -2.39 -0.02 2.48 16 27 H 0.17 7.02 4.28 -2.91 -0.01 7.01 16 28 H 0.27 15.72 8.73 -92.71 -0.81 14.91 16 29 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 30 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.13 6.58 6.12 -2.91 -0.02 6.57 16 Total: -1.00 -69.38 275.36 4.31 -65.06 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 1.01 Total: 19.99 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 5.11 Total: -34.31 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -3.51 Total: -101.23 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.71 Total: 50.47 kcal Total: -69.38 4.31 -65.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409436947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.008 kcal (2) G-P(sol) polarization free energy of solvation -69.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds