Wall clock time and date at job start Mon Mar 30 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47219 * 2 1 4 4 C 1.34316 * 125.07846 * 125.31203 * 3 2 1 5 5 C 1.39255 * 107.67075 * 180.19150 * 4 3 2 6 6 C 1.41280 * 126.94668 * 179.83984 * 5 4 3 7 7 H 1.07993 * 120.00488 * 161.07929 * 6 5 4 8 8 C 1.39815 * 119.99342 * 341.07938 * 6 5 4 9 9 N 1.30967 * 120.00372 * 337.58385 * 8 6 5 10 10 Si 1.86804 * 119.99534 * 157.57502 * 8 6 5 11 11 H 1.48500 * 109.46921 * 180.02562 * 10 8 6 12 12 H 1.48495 * 109.47111 * 299.99984 * 10 8 6 13 13 H 1.48496 * 109.47234 * 60.00418 * 10 8 6 14 14 C 1.47133 * 106.11516 * 359.57338 * 5 4 3 15 15 C 1.48067 * 126.51170 * 180.22317 * 14 5 4 16 16 C 1.39492 * 119.73735 * 154.73010 * 15 14 5 17 17 C 1.38352 * 119.06122 * 179.75465 * 16 15 14 18 18 C 1.38832 * 118.51525 * 0.51221 * 17 16 15 19 19 C 1.38257 * 119.39557 * 359.72943 * 18 17 16 20 20 N 1.31747 * 120.91021 * 0.02562 * 19 18 17 21 21 N 1.31353 * 106.97567 * 0.26296 * 14 5 4 22 22 H 1.09006 * 109.47221 * 60.00304 * 1 2 3 23 23 H 1.09000 * 109.46629 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47465 * 299.99704 * 1 2 3 25 25 H 1.09007 * 109.47291 * 240.00237 * 2 1 3 26 26 H 1.09001 * 109.47400 * 120.00402 * 2 1 3 27 27 H 1.08003 * 126.16665 * 0.02565 * 4 3 2 28 28 H 0.96996 * 119.99830 * 353.91600 * 9 8 6 29 29 H 1.08002 * 120.47127 * 0.02562 * 16 15 14 30 30 H 1.07988 * 120.74480 * 180.24228 * 17 16 15 31 31 H 1.08001 * 120.30002 * 179.70621 * 18 17 16 32 32 H 1.08002 * 119.54820 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8747 1.8972 0.8970 5 6 3.0872 3.2314 0.5596 6 6 3.9150 4.1565 1.2342 7 1 4.2442 5.0535 0.7310 8 6 4.3078 3.9104 2.5532 9 7 3.6022 3.1051 3.3074 10 14 5.8395 4.7303 3.2398 11 1 6.0373 4.3079 4.6497 12 1 7.0198 4.3288 2.4331 13 1 5.6793 6.2055 3.1825 14 6 2.2805 3.4815 -0.6452 15 6 2.1786 4.7584 -1.3879 16 6 1.8391 4.7468 -2.7408 17 6 1.7428 5.9483 -3.4198 18 6 1.9998 7.1236 -2.7270 19 6 2.3364 7.0619 -1.3874 20 7 2.4166 5.9050 -0.7623 21 7 1.6672 2.3569 -0.9364 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.3166 1.3726 1.7313 28 1 2.7607 2.7489 2.9819 29 1 1.6497 3.8133 -3.2500 30 1 1.4781 5.9713 -4.4665 31 1 1.9376 8.0774 -3.2299 32 1 2.5372 7.9747 -0.8461 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409441105.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:21 Heat of formation + Delta-G solvation = 79.027125 kcal Electronic energy + Delta-G solvation = -16720.440067 eV Core-core repulsion = 14067.384117 eV Total energy + Delta-G solvation = -2653.055949 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.38278 -40.48397 -35.95938 -34.90056 -33.30648 -32.49611 -30.40207 -29.93461 -26.61810 -25.38661 -24.23925 -23.26237 -21.60332 -20.64829 -19.45999 -17.57831 -17.15319 -16.74288 -16.35841 -15.91543 -15.70184 -15.30199 -14.83526 -14.63112 -14.37788 -14.08256 -13.76099 -13.26036 -13.04362 -12.79400 -12.69944 -12.46625 -12.31743 -11.92780 -11.58594 -11.36664 -10.80749 -10.65972 -10.50969 -10.10141 -9.47320 -9.11563 -8.88056 -6.00445 0.00531 0.49558 1.33480 1.54437 1.56651 1.83284 1.94676 2.15418 2.47875 3.06524 3.39573 3.46030 3.88174 3.90869 4.09127 4.13476 4.24324 4.31981 4.34795 4.45757 4.68643 4.76341 4.85010 4.92284 5.07397 5.18502 5.28039 5.30106 5.45068 5.65216 5.90739 6.08871 6.25776 6.58068 6.96173 7.04945 7.23530 7.35717 8.37049 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.011164 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.454781 B = 2507.446929 C = 4369.675816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.127 3.873 3 N -0.362 5.362 4 C -0.131 4.131 5 C -0.027 4.027 6 C -0.509 4.509 7 H 0.065 0.935 8 C -0.008 4.008 9 N -0.859 5.859 10 Si 1.116 2.884 11 H -0.274 1.274 12 H -0.269 1.269 13 H -0.267 1.267 14 C 0.001 3.999 15 C 0.199 3.801 16 C -0.170 4.170 17 C -0.070 4.070 18 C -0.171 4.171 19 C 0.082 3.918 20 N -0.500 5.500 21 N -0.293 5.293 22 H 0.053 0.947 23 H 0.106 0.894 24 H 0.039 0.961 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.151 0.849 28 H 0.275 0.725 29 H 0.132 0.868 30 H 0.174 0.826 31 H 0.177 0.823 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 1.645 -9.683 10.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.006 3.994 3 N -0.152 5.152 4 C -0.272 4.272 5 C -0.037 4.037 6 C -0.542 4.542 7 H 0.083 0.917 8 C -0.218 4.218 9 N -0.488 5.488 10 Si 0.935 3.065 11 H -0.199 1.199 12 H -0.194 1.194 13 H -0.191 1.191 14 C -0.163 4.163 15 C 0.062 3.938 16 C -0.191 4.191 17 C -0.096 4.096 18 C -0.191 4.191 19 C -0.076 4.076 20 N -0.210 5.210 21 N -0.120 5.120 22 H 0.072 0.928 23 H 0.125 0.875 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.119 0.881 27 H 0.168 0.832 28 H 0.087 0.913 29 H 0.150 0.850 30 H 0.192 0.808 31 H 0.194 0.806 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.718 0.937 -8.168 8.659 hybrid contribution -0.773 -0.054 -1.236 1.459 sum -3.491 0.883 -9.404 10.070 Atomic orbital electron populations 1.21979 0.93398 1.03824 1.01667 1.21814 0.96434 0.77060 1.04066 1.47794 1.36703 1.09935 1.20774 1.22290 1.07533 0.95112 1.02284 1.19403 0.97565 0.92505 0.94209 1.19804 1.28139 1.06832 0.99420 0.91665 1.28084 1.04468 0.95438 0.93809 1.70630 1.12204 1.27116 1.38858 0.83007 0.71616 0.76060 0.75832 1.19877 1.19400 1.19146 1.21720 1.02046 0.92246 1.00296 1.18622 0.95671 0.88911 0.90559 1.22169 1.02411 1.00811 0.93751 1.21905 0.95248 0.90813 1.01602 1.22551 1.00757 1.00767 0.95064 1.23325 0.95375 0.95235 0.93682 1.67682 1.13768 0.98716 1.40883 1.76356 1.23596 0.97803 1.14285 0.92831 0.87546 0.94139 0.89383 0.88070 0.83175 0.91307 0.84966 0.80827 0.80561 0.80814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 10.07 71.98 0.72 -3.60 16 2 C 0.13 4.20 7.17 86.38 0.62 4.82 16 3 N -0.36 -16.91 3.63 -345.18 -1.25 -18.16 16 4 C -0.13 -7.04 9.44 84.56 0.80 -6.25 16 5 C -0.03 -1.56 5.75 -19.95 -0.11 -1.67 16 6 C -0.51 -30.24 8.77 23.40 0.21 -30.04 16 7 H 0.07 3.93 7.12 -2.91 -0.02 3.91 16 8 C -0.01 -0.47 5.29 85.20 0.45 -0.02 16 9 N -0.86 -50.05 12.67 21.81 0.28 -49.78 16 10 Si 1.12 48.30 29.99 68.60 2.06 50.36 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 13 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 14 C 0.00 0.03 7.12 44.16 0.31 0.34 16 15 C 0.20 9.35 6.71 41.92 0.28 9.63 16 16 C -0.17 -6.23 9.75 22.60 0.22 -6.01 16 17 C -0.07 -1.87 10.17 22.44 0.23 -1.64 16 18 C -0.17 -4.31 10.11 22.42 0.23 -4.09 16 19 C 0.08 2.76 11.17 84.71 0.95 3.71 16 20 N -0.50 -23.05 8.91 -184.92 -1.65 -24.69 16 21 N -0.29 -14.52 12.15 -44.32 -0.54 -15.06 16 22 H 0.05 1.66 8.13 -2.38 -0.02 1.64 16 23 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 26 H 0.10 2.99 8.05 -2.39 -0.02 2.97 16 27 H 0.15 8.10 6.86 -2.91 -0.02 8.08 16 28 H 0.27 16.55 6.18 -92.71 -0.57 15.98 16 29 H 0.13 4.65 8.04 -2.91 -0.02 4.63 16 30 H 0.17 2.97 8.06 -2.92 -0.02 2.95 16 31 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.17 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -75.08 283.14 5.11 -69.97 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 1.32 Total: 22.16 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 4.90 Total: -34.80 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -3.16 Total: -107.69 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.06 Total: 50.36 kcal Total: -75.08 5.11 -69.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409441105.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.992 kcal (2) G-P(sol) polarization free energy of solvation -75.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds