Wall clock time and date at job start Mon Mar 30 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.47331 * 2 1 4 4 N 1.40008 * 126.08737 * 90.01945 * 3 2 1 5 5 C 1.32030 * 109.00844 * 180.02562 * 4 3 2 6 6 C 1.48449 * 125.60605 * 180.02562 * 5 4 3 7 7 C 1.39739 * 120.53335 * 359.95849 * 6 5 4 8 8 C 1.38422 * 118.31218 * 180.02562 * 7 6 5 9 9 C 1.38314 * 119.28127 * 359.97438 * 8 7 6 10 10 N 1.31881 * 121.02204 * 0.02719 * 9 8 7 11 11 C 1.31750 * 121.85257 * 359.64697 * 10 9 8 12 12 C 1.39720 * 108.78438 * 359.97438 * 5 4 3 13 13 C 1.37527 * 126.08966 * 270.31819 * 3 2 1 14 14 C 1.40274 * 126.54517 * 359.97438 * 13 3 2 15 15 H 1.07995 * 120.00163 * 0.20254 * 14 13 3 16 16 C 1.40139 * 120.00104 * 180.19911 * 14 13 3 17 17 N 1.30774 * 119.99748 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47474 * 60.00346 * 18 16 14 20 20 H 1.48503 * 109.46944 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47020 * 299.99958 * 18 16 14 22 22 H 1.08990 * 109.47018 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46973 * 300.00340 * 1 2 3 24 24 H 1.09000 * 109.46896 * 59.99868 * 1 2 3 25 25 H 1.08996 * 109.47361 * 240.00226 * 2 1 3 26 26 H 1.09004 * 109.46920 * 119.99643 * 2 1 3 27 27 H 1.07996 * 120.84474 * 0.02956 * 7 6 5 28 28 H 1.08000 * 120.35592 * 180.02562 * 8 7 6 29 29 H 1.08005 * 119.48816 * 179.97438 * 9 8 7 30 30 H 1.08003 * 119.70402 * 180.33800 * 11 10 9 31 31 H 1.08002 * 126.26107 * 179.97438 * 12 5 4 32 32 H 0.97001 * 119.99662 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2937 2.1586 1.1314 5 6 2.7138 3.3487 0.7437 6 6 3.1080 4.4616 1.6436 7 6 3.0536 4.3058 3.0312 8 6 3.4312 5.3736 3.8270 9 6 3.8469 6.5494 3.2288 10 7 3.8877 6.6665 1.9159 11 6 3.5441 5.6757 1.1184 12 6 2.7274 3.3880 -0.6529 13 6 2.2827 2.1471 -1.1113 14 6 2.1366 1.7547 -2.4501 15 1 1.7814 0.7625 -2.6864 16 6 2.4515 2.6501 -3.4811 17 7 2.8821 3.8513 -3.1951 18 14 2.2563 2.1277 -5.2640 19 1 0.8389 1.7678 -5.5220 20 1 2.6529 3.2481 -6.1543 21 1 3.1224 0.9518 -5.5329 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 2.7253 3.3760 3.4715 28 1 3.4023 5.2892 4.9033 29 1 4.1419 7.3848 3.8466 30 1 3.5959 5.8078 0.0477 31 1 3.0231 4.2269 -1.2655 32 1 3.1004 4.4709 -3.9087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409442763.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:29 Heat of formation + Delta-G solvation = 90.388173 kcal Electronic energy + Delta-G solvation = -16583.372306 eV Core-core repulsion = 13930.809009 eV Total energy + Delta-G solvation = -2652.563297 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.66431 -38.75213 -33.82610 -33.64221 -31.88785 -30.96455 -28.99580 -27.53050 -25.34140 -23.69260 -22.82704 -21.85149 -19.63020 -18.66152 -17.08403 -16.42405 -15.73731 -15.27848 -14.60943 -14.31118 -13.74296 -13.64646 -13.31911 -12.98384 -12.53079 -12.45121 -11.98792 -11.71921 -11.59486 -11.47252 -11.25438 -11.07943 -10.63098 -10.47834 -9.91537 -9.69939 -9.33910 -9.09182 -8.87775 -8.77570 -7.52638 -6.82280 -6.71112 -4.56041 1.47302 1.76929 2.90818 3.02618 3.04432 3.53196 3.78048 4.02072 4.12846 4.75855 4.93972 5.27165 5.28367 5.40158 5.51986 5.57004 5.60596 5.79979 5.85778 6.00316 6.12715 6.26237 6.33885 6.57276 6.65205 6.73994 7.01050 7.15873 7.28809 7.38474 7.72431 7.93046 8.37643 8.45141 8.55106 8.75377 9.08222 9.46803 10.18011 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.007357 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.163799 B = 3805.114613 C = 4945.398212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 N -0.419 5.419 4 N -0.375 5.375 5 C 0.087 3.913 6 C -0.023 4.023 7 C -0.069 4.069 8 C -0.179 4.179 9 C 0.074 3.926 10 N -0.487 5.487 11 C 0.113 3.887 12 C -0.334 4.334 13 C 0.252 3.748 14 C -0.448 4.448 15 H 0.075 0.925 16 C 0.078 3.922 17 N -0.785 5.785 18 Si 0.924 3.076 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.266 1.266 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.147 0.853 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 -0.835 4.556 4.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.029 3.971 3 N -0.208 5.208 4 N -0.199 5.199 5 C -0.071 4.071 6 C -0.027 4.027 7 C -0.096 4.096 8 C -0.199 4.199 9 C -0.084 4.084 10 N -0.196 5.196 11 C -0.046 4.046 12 C -0.365 4.365 13 C 0.134 3.866 14 C -0.485 4.485 15 H 0.094 0.906 16 C -0.142 4.142 17 N -0.412 5.412 18 Si 0.749 3.251 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.190 1.190 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.164 0.836 30 H 0.181 0.819 31 H 0.181 0.819 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.660 -0.712 5.117 5.208 hybrid contribution -0.283 -0.664 -1.088 1.306 sum -0.943 -1.376 4.029 4.360 Atomic orbital electron populations 1.22171 0.96429 1.01065 1.02759 1.21033 0.93688 0.80515 1.01906 1.48543 1.57911 1.10679 1.03660 1.76973 1.30383 1.04058 1.08523 1.20030 1.01565 0.91831 0.93660 1.19160 0.97527 0.93587 0.92407 1.21684 0.96084 0.98797 0.93046 1.21982 1.02446 0.94791 1.00652 1.22607 0.97677 0.96792 0.91304 1.67660 1.14905 1.31718 1.05277 1.22959 0.93630 0.87633 1.00387 1.22164 1.22701 1.01142 0.90516 1.18708 0.91805 0.89159 0.86950 1.18582 1.41233 1.00308 0.88345 0.90639 1.25743 0.92718 0.94127 1.01618 1.69671 1.31460 1.05305 1.34759 0.86105 0.79652 0.79063 0.80309 1.19037 1.20105 1.19035 0.92308 0.92657 0.91953 0.90376 0.91243 0.84823 0.85493 0.83562 0.81884 0.81859 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 10.24 37.16 0.38 -2.42 16 2 C 0.15 2.92 6.95 -4.04 -0.03 2.89 16 3 N -0.42 -10.23 3.69 -58.65 -0.22 -10.45 16 4 N -0.37 -9.38 12.24 33.27 0.41 -8.98 16 5 C 0.09 2.17 6.96 -83.02 -0.58 1.59 16 6 C -0.02 -0.49 5.89 -104.74 -0.62 -1.10 16 7 C -0.07 -1.26 9.81 -38.95 -0.38 -1.65 16 8 C -0.18 -2.70 10.10 -39.49 -0.40 -3.10 16 9 C 0.07 1.14 11.17 -17.50 -0.20 0.95 16 10 N -0.49 -9.03 10.35 -12.98 -0.13 -9.16 16 11 C 0.11 2.27 10.73 -17.20 -0.18 2.08 16 12 C -0.33 -8.89 9.13 -38.53 -0.35 -9.24 16 13 C 0.25 6.69 6.74 -84.05 -0.57 6.12 16 14 C -0.45 -11.37 9.01 -38.10 -0.34 -11.72 16 15 H 0.08 1.78 7.20 -52.49 -0.38 1.41 16 16 C 0.08 1.87 5.50 -17.29 -0.10 1.78 16 17 N -0.79 -19.53 10.29 55.56 0.57 -18.95 16 18 Si 0.92 17.99 29.56 -169.99 -5.03 12.97 16 19 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.08 1.42 7.40 -51.93 -0.38 1.03 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.13 2.39 7.91 -52.49 -0.42 1.98 16 28 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.16 3.29 7.01 -52.48 -0.37 2.93 16 31 H 0.16 4.41 4.97 -52.49 -0.26 4.15 16 32 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 LS Contribution 281.15 15.07 4.24 4.24 Total: -1.00 -29.14 281.15 -7.00 -36.14 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.48 Total: 8.01 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -3.36 Total: -13.82 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.63 Total: -47.54 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.14 -7.00 -36.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409442763.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.528 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds