Wall clock time and date at job start Mon Mar 30 2020 05:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.47331 * 2 1 4 4 N 1.40008 * 126.08737 * 90.01945 * 3 2 1 5 5 C 1.32030 * 109.00844 * 180.02562 * 4 3 2 6 6 C 1.48449 * 125.60605 * 180.02562 * 5 4 3 7 7 C 1.39739 * 120.53335 * 359.95849 * 6 5 4 8 8 C 1.38422 * 118.31218 * 180.02562 * 7 6 5 9 9 C 1.38314 * 119.28127 * 359.97438 * 8 7 6 10 10 N 1.31881 * 121.02204 * 0.02719 * 9 8 7 11 11 C 1.31750 * 121.85257 * 359.64697 * 10 9 8 12 12 C 1.39720 * 108.78438 * 359.97438 * 5 4 3 13 13 C 1.37527 * 126.08966 * 270.31819 * 3 2 1 14 14 C 1.40274 * 126.54517 * 359.97438 * 13 3 2 15 15 H 1.07995 * 120.00163 * 0.20254 * 14 13 3 16 16 C 1.40139 * 120.00104 * 180.19911 * 14 13 3 17 17 N 1.30774 * 119.99748 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99920 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47474 * 60.00346 * 18 16 14 20 20 H 1.48503 * 109.46944 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47020 * 299.99958 * 18 16 14 22 22 H 1.08990 * 109.47018 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46973 * 300.00340 * 1 2 3 24 24 H 1.09000 * 109.46896 * 59.99868 * 1 2 3 25 25 H 1.08996 * 109.47361 * 240.00226 * 2 1 3 26 26 H 1.09004 * 109.46920 * 119.99643 * 2 1 3 27 27 H 1.07996 * 120.84474 * 0.02956 * 7 6 5 28 28 H 1.08000 * 120.35592 * 180.02562 * 8 7 6 29 29 H 1.08005 * 119.48816 * 179.97438 * 9 8 7 30 30 H 1.08003 * 119.70402 * 180.33800 * 11 10 9 31 31 H 1.08002 * 126.26107 * 179.97438 * 12 5 4 32 32 H 0.97001 * 119.99662 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2937 2.1586 1.1314 5 6 2.7138 3.3487 0.7437 6 6 3.1080 4.4616 1.6436 7 6 3.0536 4.3058 3.0312 8 6 3.4312 5.3736 3.8270 9 6 3.8469 6.5494 3.2288 10 7 3.8877 6.6665 1.9159 11 6 3.5441 5.6757 1.1184 12 6 2.7274 3.3880 -0.6529 13 6 2.2827 2.1471 -1.1113 14 6 2.1366 1.7547 -2.4501 15 1 1.7814 0.7625 -2.6864 16 6 2.4515 2.6501 -3.4811 17 7 2.8821 3.8513 -3.1951 18 14 2.2563 2.1277 -5.2640 19 1 0.8389 1.7678 -5.5220 20 1 2.6529 3.2481 -6.1543 21 1 3.1224 0.9518 -5.5329 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 2.7253 3.3760 3.4715 28 1 3.4023 5.2892 4.9033 29 1 4.1419 7.3848 3.8466 30 1 3.5959 5.8078 0.0477 31 1 3.0231 4.2269 -1.2655 32 1 3.1004 4.4709 -3.9087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409442763.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:28 Heat of formation + Delta-G solvation = 72.900901 kcal Electronic energy + Delta-G solvation = -16584.130611 eV Core-core repulsion = 13930.809009 eV Total energy + Delta-G solvation = -2653.321602 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.26267 -40.41287 -35.65550 -35.27503 -33.33392 -32.40001 -30.86286 -29.18951 -27.22755 -25.18407 -24.29412 -23.38595 -21.47210 -20.38061 -18.85365 -17.90676 -17.42028 -16.78360 -16.12617 -15.91268 -15.43490 -15.11090 -14.76844 -14.55287 -14.16546 -13.93185 -13.67662 -13.43015 -13.21717 -12.99217 -12.84464 -12.56930 -12.17323 -12.01287 -11.75149 -11.39856 -10.89606 -10.81141 -10.38147 -10.33333 -9.34489 -8.68400 -8.53199 -6.50885 0.01617 0.35913 1.29440 1.42028 1.55435 1.80096 2.13067 2.34167 2.44156 3.11358 3.37750 3.58191 3.83738 4.04882 4.07868 4.12768 4.21273 4.31987 4.45041 4.60947 4.78472 4.85964 4.90868 5.09288 5.19771 5.24312 5.27699 5.44030 5.55930 5.77980 5.91287 6.01427 6.47246 6.63101 6.83242 7.05921 7.20249 7.56564 8.38063 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.007357 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.163799 B = 3805.114613 C = 4945.398212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 N -0.429 5.429 4 N -0.388 5.388 5 C 0.085 3.915 6 C -0.059 4.059 7 C -0.072 4.072 8 C -0.159 4.159 9 C 0.084 3.916 10 N -0.502 5.502 11 C 0.103 3.897 12 C -0.372 4.372 13 C 0.227 3.773 14 C -0.473 4.473 15 H 0.086 0.914 16 C 0.034 3.966 17 N -0.814 5.814 18 Si 1.001 2.999 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.258 1.258 22 H 0.101 0.899 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.135 0.865 28 H 0.176 0.824 29 H 0.195 0.805 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -1.016 5.604 5.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.018 3.982 3 N -0.218 5.218 4 N -0.212 5.212 5 C -0.074 4.074 6 C -0.063 4.063 7 C -0.099 4.099 8 C -0.178 4.178 9 C -0.073 4.073 10 N -0.211 5.211 11 C -0.055 4.055 12 C -0.404 4.404 13 C 0.108 3.892 14 C -0.509 4.509 15 H 0.105 0.895 16 C -0.183 4.183 17 N -0.441 5.441 18 Si 0.821 3.179 19 H -0.183 1.183 20 H -0.193 1.193 21 H -0.182 1.182 22 H 0.120 0.880 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.153 0.847 28 H 0.194 0.806 29 H 0.212 0.788 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.777 -0.914 6.181 6.296 hybrid contribution -0.208 -0.522 -1.252 1.372 sum -0.985 -1.436 4.929 5.227 Atomic orbital electron populations 1.22067 0.94567 1.03343 1.01154 1.21427 0.95237 0.78396 1.03097 1.48901 1.58080 1.12013 1.02815 1.76846 1.30780 1.04332 1.09265 1.20473 1.00589 0.92633 0.93698 1.19178 1.00427 0.93130 0.93582 1.21830 0.96018 1.00105 0.91937 1.22438 0.99650 0.92996 1.02708 1.23464 0.95161 0.98302 0.90412 1.67702 1.15423 1.31031 1.06904 1.22694 0.94680 0.88052 1.00098 1.22217 1.24982 1.01482 0.91688 1.19105 0.92181 0.89824 0.88138 1.18962 1.42125 1.01271 0.88498 0.89544 1.26797 0.91677 0.93804 1.06070 1.69780 1.31460 1.06381 1.36469 0.84961 0.79877 0.78884 0.74185 1.18272 1.19321 1.18226 0.87997 0.93820 0.93866 0.89527 0.89616 0.84735 0.80633 0.78848 0.83726 0.83297 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 10.24 71.98 0.74 -4.33 16 2 C 0.14 5.36 6.95 86.38 0.60 5.96 16 3 N -0.43 -21.55 3.69 -339.46 -1.25 -22.80 16 4 N -0.39 -20.05 12.24 -48.64 -0.60 -20.64 16 5 C 0.09 4.44 6.96 42.20 0.29 4.73 16 6 C -0.06 -2.59 5.89 -19.94 -0.12 -2.71 16 7 C -0.07 -2.55 9.81 22.68 0.22 -2.33 16 8 C -0.16 -4.21 10.10 22.33 0.23 -3.99 16 9 C 0.08 2.32 11.17 84.70 0.95 3.27 16 10 N -0.50 -18.13 10.35 -194.97 -2.02 -20.15 16 11 C 0.10 4.28 10.73 84.96 0.91 5.19 16 12 C -0.37 -21.09 9.13 22.95 0.21 -20.88 16 13 C 0.23 12.56 6.74 39.07 0.26 12.82 16 14 C -0.47 -24.66 9.01 23.23 0.21 -24.45 16 15 H 0.09 4.14 7.20 -2.91 -0.02 4.12 16 16 C 0.03 1.64 5.50 85.31 0.47 2.11 16 17 N -0.81 -42.12 10.29 21.86 0.22 -41.90 16 18 Si 1.00 36.80 29.56 68.60 2.03 38.83 16 19 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 20 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 21 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 22 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 23 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.09 3.12 7.40 -2.39 -0.02 3.10 16 26 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 27 H 0.13 4.70 7.91 -2.91 -0.02 4.68 16 28 H 0.18 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.15 6.39 7.01 -2.91 -0.02 6.37 16 31 H 0.15 8.70 4.97 -2.91 -0.01 8.69 16 32 H 0.29 13.45 8.29 -92.71 -0.77 12.68 16 Total: -1.00 -66.85 281.15 4.49 -62.36 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 1.13 Total: 28.89 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 4.97 Total: -24.60 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -3.64 Total: -105.49 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Total: -66.85 4.49 -62.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409442763.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.262 kcal (2) G-P(sol) polarization free energy of solvation -66.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds