Wall clock time and date at job start Mon Mar 30 2020 05:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47048 * 2 1 4 4 N 1.40003 * 126.08943 * 270.22630 * 3 2 1 5 5 C 1.32037 * 109.01130 * 180.19790 * 4 3 2 6 6 C 1.48403 * 125.61261 * 179.87892 * 5 4 3 7 7 C 1.39762 * 120.90310 * 359.69448 * 6 5 4 8 8 C 1.37971 * 119.02284 * 180.25565 * 7 6 5 9 9 N 1.31934 * 120.87692 * 359.40074 * 8 7 6 10 10 C 1.31921 * 122.00191 * 0.63594 * 9 8 7 11 11 C 1.37977 * 120.88085 * 359.65700 * 10 9 8 12 12 C 1.39752 * 108.77754 * 359.61123 * 5 4 3 13 13 C 1.37541 * 126.08394 * 90.00375 * 3 2 1 14 14 C 1.40282 * 126.54290 * 359.97438 * 13 3 2 15 15 H 1.08003 * 119.99829 * 359.97438 * 14 13 3 16 16 C 1.40140 * 119.99960 * 179.97438 * 14 13 3 17 17 N 1.30770 * 119.99846 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99905 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47027 * 59.99951 * 18 16 14 20 20 H 1.48498 * 109.47132 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47159 * 300.00140 * 18 16 14 22 22 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47275 * 299.99760 * 1 2 3 24 24 H 1.08997 * 109.46995 * 59.99561 * 1 2 3 25 25 H 1.09002 * 109.47275 * 240.00240 * 2 1 3 26 26 H 1.08998 * 109.47158 * 119.99910 * 2 1 3 27 27 H 1.08002 * 120.48457 * 359.97167 * 7 6 5 28 28 H 1.07997 * 119.55612 * 179.69995 * 8 7 6 29 29 H 1.08006 * 119.56442 * 179.68217 * 10 9 8 30 30 H 1.07999 * 120.48790 * 180.02562 * 11 10 9 31 31 H 1.07997 * 126.26645 * 180.24634 * 12 5 4 32 32 H 0.97002 * 119.99989 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2890 2.1602 -1.1314 5 6 2.7152 3.3482 -0.7436 6 6 3.1091 4.4609 -1.6431 7 6 3.0574 4.3138 -3.0320 8 6 3.4376 5.3717 -3.8318 9 7 3.8340 6.5130 -3.3017 10 6 3.8976 6.6928 -1.9964 11 6 3.5411 5.6846 -1.1245 12 6 2.7285 3.3875 0.6533 13 6 2.2884 2.1449 1.1115 14 6 2.1484 1.7501 2.4504 15 1 1.7963 0.7568 2.6864 16 6 2.4654 2.6447 3.4815 17 7 2.8912 3.8476 3.1956 18 14 2.2796 2.1188 5.2643 19 1 3.1504 0.9449 5.5273 20 1 2.6758 3.2391 6.1547 21 1 0.8644 1.7543 5.5279 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.7291 3.3840 -3.4726 28 1 3.4057 5.2658 -4.9061 29 1 4.2327 7.6420 -1.6049 30 1 3.5952 5.8388 -0.0569 31 1 3.0252 4.2259 1.2660 32 1 3.1103 4.4670 3.9093 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409442945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:34 Heat of formation + Delta-G solvation = 90.203931 kcal Electronic energy + Delta-G solvation = -16574.188645 eV Core-core repulsion = 13921.617358 eV Total energy + Delta-G solvation = -2652.571286 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65403 -38.78784 -33.90502 -33.71464 -31.77444 -30.73984 -29.08623 -27.71385 -25.35066 -23.79746 -22.76759 -21.87353 -19.66352 -18.83038 -17.13502 -16.03112 -15.41946 -15.21482 -15.01514 -14.34679 -13.77578 -13.73977 -13.31041 -13.15655 -12.81288 -12.14739 -12.02613 -11.72415 -11.56114 -11.40779 -11.29321 -11.11025 -10.65660 -10.47508 -9.97630 -9.78145 -9.28891 -9.04913 -8.87176 -8.66543 -7.64987 -6.89301 -6.74708 -4.59468 1.59179 1.66625 2.88356 3.00075 3.01837 3.52192 3.74844 3.98506 4.13221 4.72711 4.88384 5.23455 5.29526 5.34364 5.51754 5.69459 5.74331 5.77757 5.85549 6.09813 6.16061 6.22820 6.29990 6.55340 6.63375 6.75202 6.98178 7.19368 7.27085 7.35742 7.69597 7.89324 8.33780 8.42061 8.49851 8.71761 9.04127 9.42305 10.14441 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.007306 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.163670 B = 3831.803514 C = 4970.076350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.151 3.849 3 N -0.418 5.418 4 N -0.369 5.369 5 C 0.078 3.922 6 C 0.068 3.932 7 C -0.162 4.162 8 C 0.086 3.914 9 N -0.503 5.503 10 C 0.089 3.911 11 C -0.155 4.155 12 C -0.329 4.329 13 C 0.251 3.749 14 C -0.448 4.448 15 H 0.076 0.924 16 C 0.078 3.922 17 N -0.786 5.786 18 Si 0.925 3.075 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.265 1.265 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.134 0.866 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 -0.679 -2.540 2.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.028 3.972 3 N -0.207 5.207 4 N -0.194 5.194 5 C -0.079 4.079 6 C 0.058 3.942 7 C -0.184 4.184 8 C -0.070 4.070 9 N -0.214 5.214 10 C -0.067 4.067 11 C -0.177 4.177 12 C -0.361 4.361 13 C 0.132 3.868 14 C -0.484 4.484 15 H 0.094 0.906 16 C -0.142 4.142 17 N -0.413 5.413 18 Si 0.749 3.251 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.190 1.190 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.152 0.848 28 H 0.166 0.834 29 H 0.168 0.832 30 H 0.159 0.841 31 H 0.182 0.818 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.645 -0.659 -4.022 4.126 hybrid contribution -0.235 -0.567 2.144 2.230 sum -0.880 -1.226 -1.878 2.409 Atomic orbital electron populations 1.22170 0.96365 1.01117 1.02775 1.21048 0.93742 0.80434 1.01976 1.48579 1.57695 1.10724 1.03656 1.76992 1.29811 1.04055 1.08497 1.20111 1.02067 0.92016 0.93751 1.18500 0.92209 0.91706 0.91817 1.22226 1.01743 1.00639 0.93747 1.22512 0.95917 0.88662 0.99880 1.67541 1.15076 1.24308 1.14450 1.22540 0.96882 0.98650 0.88613 1.22253 1.00139 0.93184 1.02121 1.22183 1.22413 1.01034 0.90503 1.18724 0.91903 0.89165 0.86974 1.18590 1.41265 1.00261 0.88317 0.90591 1.25745 0.92667 0.94124 1.01662 1.69671 1.31592 1.05294 1.34743 0.86098 0.79692 0.79086 0.80225 1.18994 1.20101 1.19006 0.92254 0.91969 0.92611 0.91175 0.90318 0.84820 0.83441 0.83159 0.84074 0.81838 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 10.24 37.16 0.38 -2.41 16 2 C 0.15 2.89 6.95 -4.04 -0.03 2.86 16 3 N -0.42 -10.16 3.69 -58.65 -0.22 -10.37 16 4 N -0.37 -9.23 12.26 33.27 0.41 -8.82 16 5 C 0.08 1.93 6.97 -83.03 -0.58 1.35 16 6 C 0.07 1.43 5.91 -104.58 -0.62 0.82 16 7 C -0.16 -3.02 9.78 -39.11 -0.38 -3.40 16 8 C 0.09 1.42 11.17 -17.61 -0.20 1.23 16 9 N -0.50 -8.72 10.35 -13.34 -0.14 -8.85 16 10 C 0.09 1.48 11.17 -17.61 -0.20 1.29 16 11 C -0.16 -2.93 9.64 -39.11 -0.38 -3.31 16 12 C -0.33 -8.73 9.15 -38.52 -0.35 -9.08 16 13 C 0.25 6.62 6.74 -84.04 -0.57 6.05 16 14 C -0.45 -11.30 9.01 -38.10 -0.34 -11.64 16 15 H 0.08 1.78 7.19 -52.48 -0.38 1.41 16 16 C 0.08 1.86 5.50 -17.29 -0.10 1.76 16 17 N -0.79 -19.34 10.29 55.56 0.57 -18.77 16 18 Si 0.92 17.82 29.56 -169.99 -5.03 12.79 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.28 -5.20 7.11 56.52 0.40 -4.79 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.08 1.42 7.38 -51.93 -0.38 1.03 16 27 H 0.13 2.42 7.92 -52.49 -0.42 2.00 16 28 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.15 1.99 8.06 -52.48 -0.42 1.56 16 30 H 0.14 2.62 7.13 -52.49 -0.37 2.25 16 31 H 0.16 4.39 5.03 -52.49 -0.26 4.12 16 32 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 LS Contribution 281.34 15.07 4.24 4.24 Total: -1.00 -29.14 281.34 -7.00 -36.15 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -3.49 Total: 8.12 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -3.36 Total: -14.48 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.63 Total: -46.82 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.14 -7.00 -36.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409442945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.349 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds