Wall clock time and date at job start Mon Mar 30 2020 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47048 * 2 1 4 4 N 1.40003 * 126.08943 * 270.22630 * 3 2 1 5 5 C 1.32037 * 109.01130 * 180.19790 * 4 3 2 6 6 C 1.48403 * 125.61261 * 179.87892 * 5 4 3 7 7 C 1.39762 * 120.90310 * 359.69448 * 6 5 4 8 8 C 1.37971 * 119.02284 * 180.25565 * 7 6 5 9 9 N 1.31934 * 120.87692 * 359.40074 * 8 7 6 10 10 C 1.31921 * 122.00191 * 0.63594 * 9 8 7 11 11 C 1.37977 * 120.88085 * 359.65700 * 10 9 8 12 12 C 1.39752 * 108.77754 * 359.61123 * 5 4 3 13 13 C 1.37541 * 126.08394 * 90.00375 * 3 2 1 14 14 C 1.40282 * 126.54290 * 359.97438 * 13 3 2 15 15 H 1.08003 * 119.99829 * 359.97438 * 14 13 3 16 16 C 1.40140 * 119.99960 * 179.97438 * 14 13 3 17 17 N 1.30770 * 119.99846 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99905 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47027 * 59.99951 * 18 16 14 20 20 H 1.48498 * 109.47132 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47159 * 300.00140 * 18 16 14 22 22 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47275 * 299.99760 * 1 2 3 24 24 H 1.08997 * 109.46995 * 59.99561 * 1 2 3 25 25 H 1.09002 * 109.47275 * 240.00240 * 2 1 3 26 26 H 1.08998 * 109.47158 * 119.99910 * 2 1 3 27 27 H 1.08002 * 120.48457 * 359.97167 * 7 6 5 28 28 H 1.07997 * 119.55612 * 179.69995 * 8 7 6 29 29 H 1.08006 * 119.56442 * 179.68217 * 10 9 8 30 30 H 1.07999 * 120.48790 * 180.02562 * 11 10 9 31 31 H 1.07997 * 126.26645 * 180.24634 * 12 5 4 32 32 H 0.97002 * 119.99989 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2890 2.1602 -1.1314 5 6 2.7152 3.3482 -0.7436 6 6 3.1091 4.4609 -1.6431 7 6 3.0574 4.3138 -3.0320 8 6 3.4376 5.3717 -3.8318 9 7 3.8340 6.5130 -3.3017 10 6 3.8976 6.6928 -1.9964 11 6 3.5411 5.6846 -1.1245 12 6 2.7285 3.3875 0.6533 13 6 2.2884 2.1449 1.1115 14 6 2.1484 1.7501 2.4504 15 1 1.7963 0.7568 2.6864 16 6 2.4654 2.6447 3.4815 17 7 2.8912 3.8476 3.1956 18 14 2.2796 2.1188 5.2643 19 1 3.1504 0.9449 5.5273 20 1 2.6758 3.2391 6.1547 21 1 0.8644 1.7543 5.5279 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.7291 3.3840 -3.4726 28 1 3.4057 5.2658 -4.9061 29 1 4.2327 7.6420 -1.6049 30 1 3.5952 5.8388 -0.0569 31 1 3.0252 4.2259 1.2660 32 1 3.1103 4.4670 3.9093 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409442945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:33 Heat of formation + Delta-G solvation = 73.074389 kcal Electronic energy + Delta-G solvation = -16574.931437 eV Core-core repulsion = 13921.617358 eV Total energy + Delta-G solvation = -2653.314079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.26425 -40.42767 -35.68810 -35.36646 -33.27199 -32.14427 -30.92895 -29.39580 -27.22659 -25.32170 -24.21099 -23.41017 -21.49270 -20.50884 -18.91584 -17.74450 -16.91940 -16.75279 -16.46377 -15.95455 -15.43858 -15.28745 -14.75056 -14.58100 -14.38364 -13.83447 -13.72043 -13.45373 -13.20548 -12.92049 -12.83736 -12.54749 -12.18116 -12.00083 -11.80428 -11.45485 -10.93654 -10.78886 -10.44761 -10.03880 -9.48210 -8.76917 -8.55031 -6.52640 0.04542 0.28180 1.28698 1.41838 1.54862 1.79761 2.11321 2.31981 2.44701 3.10551 3.35515 3.61889 3.72696 3.97244 4.05999 4.25696 4.27788 4.30579 4.43996 4.73405 4.75615 4.78065 4.93537 5.04668 5.11124 5.22329 5.25662 5.41572 5.62772 5.79659 5.87016 5.98857 6.44859 6.60117 6.81551 7.04190 7.17239 7.52869 8.36522 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.007306 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.163670 B = 3831.803514 C = 4970.076350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.139 3.861 3 N -0.427 5.427 4 N -0.384 5.384 5 C 0.073 3.927 6 C 0.033 3.967 7 C -0.166 4.166 8 C 0.099 3.901 9 N -0.506 5.506 10 C 0.101 3.899 11 C -0.164 4.164 12 C -0.366 4.366 13 C 0.225 3.775 14 C -0.472 4.472 15 H 0.086 0.914 16 C 0.034 3.966 17 N -0.813 5.813 18 Si 1.001 2.999 19 H -0.259 1.259 20 H -0.268 1.268 21 H -0.259 1.259 22 H 0.102 0.898 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.134 0.866 28 H 0.189 0.811 29 H 0.188 0.812 30 H 0.134 0.866 31 H 0.153 0.847 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.708 -0.755 -2.616 2.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.018 3.982 3 N -0.217 5.217 4 N -0.208 5.208 5 C -0.085 4.085 6 C 0.023 3.977 7 C -0.187 4.187 8 C -0.057 4.057 9 N -0.216 5.216 10 C -0.055 4.055 11 C -0.185 4.185 12 C -0.398 4.398 13 C 0.106 3.894 14 C -0.508 4.508 15 H 0.104 0.896 16 C -0.183 4.183 17 N -0.440 5.440 18 Si 0.821 3.179 19 H -0.183 1.183 20 H -0.192 1.192 21 H -0.183 1.183 22 H 0.120 0.880 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.152 0.848 28 H 0.205 0.795 29 H 0.205 0.795 30 H 0.151 0.849 31 H 0.170 0.830 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.711 -0.749 -4.124 4.251 hybrid contribution -0.190 -0.499 2.088 2.155 sum -0.901 -1.247 -2.036 2.552 Atomic orbital electron populations 1.22067 0.94514 1.03390 1.01169 1.21443 0.95283 0.78342 1.03160 1.48940 1.57848 1.12054 1.02823 1.76871 1.30203 1.04415 1.09326 1.20578 1.01222 0.92827 0.93863 1.18662 0.94566 0.91724 0.92758 1.22295 1.02058 1.01558 0.92778 1.23072 0.93759 0.87391 1.01484 1.67698 1.14926 1.24461 1.14519 1.23037 0.95142 0.99166 0.88140 1.22297 1.00723 0.93228 1.02265 1.22243 1.24623 1.01405 0.91540 1.19133 0.92281 0.89845 0.88141 1.18969 1.42173 1.01232 0.88466 0.89552 1.26781 0.91631 0.93829 1.06029 1.69759 1.31417 1.06314 1.36506 0.84962 0.79865 0.78918 0.74180 1.18276 1.19204 1.18337 0.87959 0.93829 0.93822 0.89612 0.89421 0.84795 0.79453 0.79526 0.84855 0.83032 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 10.24 71.98 0.74 -4.29 16 2 C 0.14 5.29 6.95 86.38 0.60 5.89 16 3 N -0.43 -21.31 3.69 -339.48 -1.25 -22.56 16 4 N -0.38 -19.76 12.26 -48.65 -0.60 -20.36 16 5 C 0.07 3.79 6.97 42.19 0.29 4.08 16 6 C 0.03 1.42 5.91 -19.83 -0.12 1.30 16 7 C -0.17 -6.07 9.78 22.57 0.22 -5.85 16 8 C 0.10 3.02 11.17 84.61 0.95 3.97 16 9 N -0.51 -16.21 10.35 -196.13 -2.03 -18.23 16 10 C 0.10 3.17 11.17 84.62 0.95 4.12 16 11 C -0.16 -6.22 9.64 22.57 0.22 -6.00 16 12 C -0.37 -20.40 9.15 22.96 0.21 -20.19 16 13 C 0.22 12.32 6.74 39.06 0.26 12.58 16 14 C -0.47 -24.31 9.01 23.23 0.21 -24.10 16 15 H 0.09 4.08 7.19 -2.91 -0.02 4.06 16 16 C 0.03 1.66 5.50 85.31 0.47 2.13 16 17 N -0.81 -41.01 10.29 21.86 0.22 -40.79 16 18 Si 1.00 36.05 29.56 68.60 2.03 38.08 16 19 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 20 H -0.27 -9.18 7.11 99.48 0.71 -8.48 16 21 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 22 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.09 3.13 7.38 -2.39 -0.02 3.11 16 27 H 0.13 4.82 7.92 -2.91 -0.02 4.80 16 28 H 0.19 4.15 8.06 -2.91 -0.02 4.12 16 29 H 0.19 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.13 5.19 7.13 -2.91 -0.02 5.17 16 31 H 0.15 8.63 5.03 -2.91 -0.01 8.62 16 32 H 0.29 13.07 8.29 -92.71 -0.77 12.30 16 Total: -1.00 -64.86 281.34 4.50 -60.36 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 1.13 Total: 29.87 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 4.99 Total: -26.37 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -3.65 Total: -101.94 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -64.86 4.50 -60.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409442945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.433 kcal (2) G-P(sol) polarization free energy of solvation -64.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds