Wall clock time and date at job start Mon Mar 30 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47474 * 2 1 4 4 N 1.40003 * 126.08798 * 270.29253 * 3 2 1 5 5 C 1.32042 * 109.01285 * 180.16902 * 4 3 2 6 6 C 1.48379 * 125.61760 * 179.84173 * 5 4 3 7 7 C 1.39331 * 119.72608 * 359.69779 * 6 5 4 8 8 C 1.38389 * 119.06765 * 180.25738 * 7 6 5 9 9 C 1.38795 * 118.51375 * 359.47839 * 8 7 6 10 10 C 1.38238 * 119.36057 * 0.49845 * 9 8 7 11 11 N 1.31770 * 120.89490 * 359.77222 * 10 9 8 12 12 C 1.39761 * 108.77089 * 359.58223 * 5 4 3 13 13 C 1.37530 * 126.08523 * 89.99645 * 3 2 1 14 14 C 1.40289 * 126.53745 * 0.02562 * 13 3 2 15 15 H 1.07997 * 120.00202 * 0.02562 * 14 13 3 16 16 C 1.40143 * 119.99749 * 180.02562 * 14 13 3 17 17 N 1.30775 * 120.00030 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46884 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46793 * 120.00355 * 18 16 14 21 21 H 1.48494 * 109.47395 * 240.00452 * 18 16 14 22 22 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46718 * 299.99858 * 1 2 3 24 24 H 1.08999 * 109.47096 * 59.99720 * 1 2 3 25 25 H 1.09009 * 109.47155 * 239.99975 * 2 1 3 26 26 H 1.08999 * 109.47096 * 120.00280 * 2 1 3 27 27 H 1.08002 * 120.46227 * 359.97438 * 7 6 5 28 28 H 1.08007 * 120.74146 * 179.70623 * 8 7 6 29 29 H 1.07991 * 120.31888 * 180.22860 * 9 8 7 30 30 H 1.08002 * 119.54982 * 179.73996 * 10 9 8 31 31 H 1.07993 * 126.26812 * 180.28216 * 12 5 4 32 32 H 0.97000 * 120.00020 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2879 2.1606 -1.1314 5 6 2.7141 3.3487 -0.7437 6 6 3.1075 4.4614 -1.6430 7 6 3.0462 4.2881 -3.0241 8 6 3.4215 5.3330 -3.8502 9 6 3.8359 6.5225 -3.2673 10 6 3.8718 6.6255 -1.8892 11 7 3.5143 5.6129 -1.1255 12 6 2.7279 3.3877 0.6533 13 6 2.2884 2.1449 1.1114 14 6 2.1491 1.7497 2.4503 15 1 1.7986 0.7559 2.6863 16 6 2.4649 2.6447 3.4815 17 7 2.8889 3.8483 3.1956 18 14 2.2788 2.1188 5.2642 19 1 1.7852 0.7193 5.3185 20 1 3.5951 2.2059 5.9459 21 1 1.3085 3.0131 5.9454 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.7149 3.3498 -3.4441 28 1 3.3890 5.2265 -4.9245 29 1 4.1316 7.3579 -3.8843 30 1 4.1978 7.5482 -1.4324 31 1 3.0240 4.2262 1.2661 32 1 3.1071 4.4679 3.9094 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409443880.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:24 Heat of formation + Delta-G solvation = 95.721077 kcal Electronic energy + Delta-G solvation = -16580.923240 eV Core-core repulsion = 13928.591195 eV Total energy + Delta-G solvation = -2652.332045 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.62262 -38.67791 -33.68658 -33.48182 -31.96287 -30.96389 -28.89840 -27.59222 -25.20861 -23.72501 -22.82363 -21.82391 -19.54493 -18.78238 -17.01273 -16.04498 -15.71738 -15.21086 -14.76321 -14.25057 -13.74772 -13.69033 -13.26175 -12.92111 -12.76218 -12.18338 -11.89995 -11.58900 -11.48705 -11.40691 -11.18041 -11.11487 -10.55313 -10.39842 -9.82586 -9.58646 -9.39173 -9.00089 -8.86325 -8.60461 -7.51797 -6.75188 -6.59607 -4.45158 1.46511 1.78301 2.93631 3.07890 3.12472 3.53055 3.82297 4.03861 4.15897 4.87173 4.93805 5.18411 5.32939 5.36999 5.47122 5.55728 5.66402 5.84919 5.90474 6.09816 6.17315 6.22842 6.38198 6.49629 6.62540 6.70009 7.07729 7.17616 7.30192 7.46049 7.79871 8.07523 8.44781 8.63299 8.66910 8.90101 9.19859 9.54508 10.28058 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.007388 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.856774 B = 3788.878136 C = 4923.870910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 N -0.416 5.416 4 N -0.373 5.373 5 C 0.084 3.916 6 C 0.238 3.762 7 C -0.159 4.159 8 C -0.082 4.082 9 C -0.197 4.197 10 C 0.100 3.900 11 N -0.464 5.464 12 C -0.305 4.305 13 C 0.243 3.757 14 C -0.448 4.448 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.780 5.780 18 Si 0.923 3.077 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.273 1.273 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.151 0.849 31 H 0.170 0.830 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.193 0.622 -5.746 5.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.029 3.971 3 N -0.205 5.205 4 N -0.200 5.200 5 C -0.073 4.073 6 C 0.100 3.900 7 C -0.181 4.181 8 C -0.108 4.108 9 C -0.218 4.218 10 C -0.059 4.059 11 N -0.174 5.174 12 C -0.337 4.337 13 C 0.125 3.875 14 C -0.485 4.485 15 H 0.094 0.906 16 C -0.144 4.144 17 N -0.406 5.406 18 Si 0.747 3.253 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.198 1.198 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.154 0.846 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.168 0.832 31 H 0.187 0.813 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.393 0.056 -5.769 5.783 hybrid contribution 0.038 0.204 0.528 0.567 sum -0.355 0.261 -5.242 5.260 Atomic orbital electron populations 1.22171 0.96445 1.01028 1.02776 1.21034 0.93684 0.80496 1.01914 1.48558 1.57659 1.10615 1.03659 1.76958 1.30689 1.03925 1.08402 1.19778 1.02363 0.91274 0.93844 1.18982 0.91612 0.89954 0.89454 1.22147 1.01567 1.00221 0.94138 1.21434 0.96552 0.93003 0.99844 1.22023 1.04433 0.98721 0.96647 1.22692 0.95783 0.97075 0.90367 1.67656 1.09883 0.99565 1.40304 1.22299 1.20148 1.00576 0.90666 1.18808 0.92425 0.89309 0.87002 1.18625 1.41429 1.00165 0.88283 0.90596 1.25762 0.92962 0.94202 1.01517 1.69751 1.31348 1.05122 1.34382 0.86030 0.78681 0.79638 0.80936 1.18668 1.19841 1.19844 0.92337 0.91953 0.92636 0.91240 0.90334 0.84625 0.85507 0.85592 0.83181 0.81279 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 10.24 37.16 0.38 -2.48 16 2 C 0.15 2.98 6.95 -4.04 -0.03 2.95 16 3 N -0.42 -10.43 3.69 -58.65 -0.22 -10.65 16 4 N -0.37 -9.62 12.15 33.27 0.40 -9.22 16 5 C 0.08 2.22 6.96 -83.03 -0.58 1.64 16 6 C 0.24 5.42 6.75 -82.94 -0.56 4.86 16 7 C -0.16 -3.02 9.72 -39.12 -0.38 -3.40 16 8 C -0.08 -1.24 10.17 -39.32 -0.40 -1.64 16 9 C -0.20 -2.82 10.11 -39.38 -0.40 -3.22 16 10 C 0.10 1.67 11.17 -17.58 -0.20 1.47 16 11 N -0.46 -10.14 10.05 -9.77 -0.10 -10.24 16 12 C -0.30 -8.67 9.46 -38.52 -0.36 -9.04 16 13 C 0.24 6.70 6.74 -84.05 -0.57 6.14 16 14 C -0.45 -11.77 9.01 -38.10 -0.34 -12.12 16 15 H 0.08 1.85 7.19 -52.49 -0.38 1.48 16 16 C 0.08 1.89 5.50 -17.29 -0.10 1.80 16 17 N -0.78 -20.48 10.29 55.56 0.57 -19.90 16 18 Si 0.92 18.58 29.56 -169.99 -5.03 13.56 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 26 H 0.08 1.46 7.38 -51.93 -0.38 1.07 16 27 H 0.14 2.51 7.82 -52.49 -0.41 2.10 16 28 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.17 5.06 5.71 -52.49 -0.30 4.76 16 32 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 LS Contribution 282.97 15.07 4.26 4.26 Total: -1.00 -31.10 282.97 -7.19 -38.30 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.56 Total: 6.91 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.53 Total: -13.02 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.66 Total: -50.01 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.10 -7.19 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443880.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.016 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds