Wall clock time and date at job start Mon Mar 30 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47474 * 2 1 4 4 N 1.40003 * 126.08798 * 270.29253 * 3 2 1 5 5 C 1.32042 * 109.01285 * 180.16902 * 4 3 2 6 6 C 1.48379 * 125.61760 * 179.84173 * 5 4 3 7 7 C 1.39331 * 119.72608 * 359.69779 * 6 5 4 8 8 C 1.38389 * 119.06765 * 180.25738 * 7 6 5 9 9 C 1.38795 * 118.51375 * 359.47839 * 8 7 6 10 10 C 1.38238 * 119.36057 * 0.49845 * 9 8 7 11 11 N 1.31770 * 120.89490 * 359.77222 * 10 9 8 12 12 C 1.39761 * 108.77089 * 359.58223 * 5 4 3 13 13 C 1.37530 * 126.08523 * 89.99645 * 3 2 1 14 14 C 1.40289 * 126.53745 * 0.02562 * 13 3 2 15 15 H 1.07997 * 120.00202 * 0.02562 * 14 13 3 16 16 C 1.40143 * 119.99749 * 180.02562 * 14 13 3 17 17 N 1.30775 * 120.00030 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46884 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46793 * 120.00355 * 18 16 14 21 21 H 1.48494 * 109.47395 * 240.00452 * 18 16 14 22 22 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46718 * 299.99858 * 1 2 3 24 24 H 1.08999 * 109.47096 * 59.99720 * 1 2 3 25 25 H 1.09009 * 109.47155 * 239.99975 * 2 1 3 26 26 H 1.08999 * 109.47096 * 120.00280 * 2 1 3 27 27 H 1.08002 * 120.46227 * 359.97438 * 7 6 5 28 28 H 1.08007 * 120.74146 * 179.70623 * 8 7 6 29 29 H 1.07991 * 120.31888 * 180.22860 * 9 8 7 30 30 H 1.08002 * 119.54982 * 179.73996 * 10 9 8 31 31 H 1.07993 * 126.26812 * 180.28216 * 12 5 4 32 32 H 0.97000 * 120.00020 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2879 2.1606 -1.1314 5 6 2.7141 3.3487 -0.7437 6 6 3.1075 4.4614 -1.6430 7 6 3.0462 4.2881 -3.0241 8 6 3.4215 5.3330 -3.8502 9 6 3.8359 6.5225 -3.2673 10 6 3.8718 6.6255 -1.8892 11 7 3.5143 5.6129 -1.1255 12 6 2.7279 3.3877 0.6533 13 6 2.2884 2.1449 1.1114 14 6 2.1491 1.7497 2.4503 15 1 1.7986 0.7559 2.6863 16 6 2.4649 2.6447 3.4815 17 7 2.8889 3.8483 3.1956 18 14 2.2788 2.1188 5.2642 19 1 1.7852 0.7193 5.3185 20 1 3.5951 2.2059 5.9459 21 1 1.3085 3.0131 5.9454 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.7149 3.3498 -3.4441 28 1 3.3890 5.2265 -4.9245 29 1 4.1316 7.3579 -3.8843 30 1 4.1978 7.5482 -1.4324 31 1 3.0240 4.2262 1.2661 32 1 3.1071 4.4679 3.9094 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409443880.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:23 Heat of formation + Delta-G solvation = 75.687219 kcal Electronic energy + Delta-G solvation = -16581.791973 eV Core-core repulsion = 13928.591195 eV Total energy + Delta-G solvation = -2653.200778 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.23080 -40.37997 -35.61752 -35.12830 -33.33272 -32.44662 -30.79597 -29.30499 -27.17306 -25.24264 -24.21036 -23.38609 -21.45727 -20.49960 -18.85336 -17.69175 -17.23477 -16.68209 -16.25628 -15.91963 -15.47385 -15.23041 -14.77683 -14.54184 -14.14586 -13.77151 -13.65872 -13.38289 -13.15738 -12.95051 -12.79817 -12.53133 -12.14661 -11.98598 -11.72337 -11.35864 -10.85485 -10.79247 -10.43173 -10.17071 -9.35466 -8.69021 -8.49298 -6.48458 0.02655 0.47320 1.27258 1.41403 1.58563 1.76808 2.11842 2.31941 2.41241 3.17710 3.41318 3.46403 3.94477 4.02187 4.09954 4.28531 4.31545 4.32985 4.46211 4.69344 4.79936 4.86157 4.95695 5.09030 5.21017 5.26909 5.30894 5.43590 5.53823 5.79264 5.92461 6.08693 6.48076 6.66119 6.85409 7.20050 7.24338 7.58253 8.41051 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.007388 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.856774 B = 3788.878136 C = 4923.870910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 N -0.425 5.425 4 N -0.381 5.381 5 C 0.079 3.921 6 C 0.187 3.813 7 C -0.164 4.164 8 C -0.071 4.071 9 C -0.167 4.167 10 C 0.085 3.915 11 N -0.509 5.509 12 C -0.352 4.352 13 C 0.220 3.780 14 C -0.472 4.472 15 H 0.089 0.911 16 C 0.028 3.972 17 N -0.815 5.815 18 Si 1.004 2.996 19 H -0.250 1.250 20 H -0.266 1.266 21 H -0.267 1.267 22 H 0.103 0.897 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.132 0.868 28 H 0.175 0.825 29 H 0.180 0.820 30 H 0.181 0.819 31 H 0.146 0.854 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.157 0.830 -6.839 6.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.018 3.982 3 N -0.215 5.215 4 N -0.207 5.207 5 C -0.079 4.079 6 C 0.051 3.949 7 C -0.186 4.186 8 C -0.097 4.097 9 C -0.187 4.187 10 C -0.074 4.074 11 N -0.219 5.219 12 C -0.384 4.384 13 C 0.101 3.899 14 C -0.508 4.508 15 H 0.107 0.893 16 C -0.188 4.188 17 N -0.441 5.441 18 Si 0.824 3.176 19 H -0.174 1.174 20 H -0.191 1.191 21 H -0.192 1.192 22 H 0.121 0.879 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.150 0.850 28 H 0.192 0.808 29 H 0.197 0.803 30 H 0.198 0.802 31 H 0.163 0.837 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.368 0.234 -6.889 6.902 hybrid contribution 0.086 0.278 0.716 0.773 sum -0.282 0.512 -6.173 6.200 Atomic orbital electron populations 1.22069 0.94502 1.03395 1.01168 1.21454 0.95301 0.78200 1.03207 1.48922 1.57844 1.12012 1.02712 1.76820 1.30731 1.04030 1.09117 1.20343 1.01277 0.92393 0.93907 1.18900 0.95470 0.89953 0.90598 1.22179 1.01930 1.01564 0.92890 1.21955 0.94343 0.91705 1.01695 1.22585 1.00654 0.99661 0.95811 1.23356 0.95266 0.96776 0.91965 1.67515 1.11210 1.00489 1.42707 1.22235 1.23292 1.00960 0.91943 1.19167 0.92626 0.89818 0.88292 1.19021 1.42254 1.01158 0.88354 0.89321 1.26901 0.91759 0.93804 1.06350 1.69893 1.31602 1.06426 1.36214 0.84828 0.78870 0.79708 0.74206 1.17355 1.19128 1.19161 0.87870 0.93915 0.93772 0.89443 0.89447 0.85034 0.80809 0.80268 0.80224 0.83651 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.20 10.24 71.98 0.74 -4.46 16 2 C 0.14 5.50 6.95 86.38 0.60 6.10 16 3 N -0.43 -22.17 3.69 -339.47 -1.25 -23.42 16 4 N -0.38 -20.53 12.15 -48.66 -0.59 -21.12 16 5 C 0.08 4.42 6.96 42.18 0.29 4.72 16 6 C 0.19 8.88 6.75 41.99 0.28 9.17 16 7 C -0.16 -6.16 9.72 22.57 0.22 -5.94 16 8 C -0.07 -1.90 10.17 22.44 0.23 -1.67 16 9 C -0.17 -4.06 10.11 22.40 0.23 -3.83 16 10 C 0.08 2.72 11.17 84.70 0.95 3.66 16 11 N -0.51 -22.89 10.05 -184.83 -1.86 -24.75 16 12 C -0.35 -21.50 9.46 22.96 0.22 -21.29 16 13 C 0.22 12.79 6.74 39.07 0.26 13.06 16 14 C -0.47 -25.62 9.01 23.23 0.21 -25.41 16 15 H 0.09 4.40 7.19 -2.91 -0.02 4.38 16 16 C 0.03 1.46 5.50 85.31 0.47 1.93 16 17 N -0.81 -44.88 10.29 21.86 0.22 -44.66 16 18 Si 1.00 38.30 29.56 68.60 2.03 40.32 16 19 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 20 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 22 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 23 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 26 H 0.09 3.24 7.38 -2.39 -0.02 3.22 16 27 H 0.13 4.90 7.82 -2.91 -0.02 4.88 16 28 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.18 2.52 8.06 -2.92 -0.02 2.49 16 30 H 0.18 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.15 9.44 5.71 -2.91 -0.02 9.42 16 32 H 0.29 14.18 8.29 -92.71 -0.77 13.41 16 Total: -1.00 -74.57 282.97 4.37 -70.20 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 1.13 Total: 27.40 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 4.69 Total: -23.97 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -3.48 Total: -113.95 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.32 kcal Total: -74.57 4.37 -70.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443880.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.884 kcal (2) G-P(sol) polarization free energy of solvation -74.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds