Wall clock time and date at job start Mon Mar 30 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38834 * 119.73564 * 2 1 4 4 C 1.37742 * 120.66439 * 179.97438 * 3 2 1 5 5 C 1.39130 * 119.78180 * 359.76184 * 4 3 2 6 6 N 1.37680 * 133.50501 * 179.54325 * 5 4 3 7 7 H 0.97005 * 125.06189 * 0.73293 * 6 5 4 8 8 C 1.36829 * 109.87486 * 180.45884 * 6 5 4 9 9 C 1.34236 * 109.93000 * 0.26985 * 8 6 5 10 10 C 1.50699 * 126.50429 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47282 * 119.97112 * 10 9 8 12 12 C 1.53000 * 109.47153 * 239.97319 * 10 9 8 13 13 C 1.50698 * 109.47034 * 359.97438 * 10 9 8 14 14 H 1.07997 * 120.00187 * 356.12252 * 13 10 9 15 15 C 1.37874 * 120.00175 * 176.12656 * 13 10 9 16 16 N 1.31518 * 120.00110 * 6.64038 * 15 13 10 17 17 Si 1.86800 * 120.00190 * 186.64568 * 15 13 10 18 18 H 1.48505 * 109.47255 * 85.10725 * 17 15 13 19 19 H 1.48500 * 109.47428 * 205.10744 * 17 15 13 20 20 H 1.48504 * 109.47072 * 325.11344 * 17 15 13 21 21 C 1.40671 * 119.32732 * 0.51384 * 5 4 3 22 22 C 1.36626 * 119.73569 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47709 * 269.98014 * 1 2 3 24 24 H 1.09003 * 109.47175 * 29.97974 * 1 2 3 25 25 H 1.09001 * 109.47299 * 149.98031 * 1 2 3 26 26 H 1.08000 * 119.66817 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.11022 * 180.02562 * 4 3 2 28 28 H 1.08001 * 125.03654 * 180.24130 * 8 6 5 29 29 H 1.09008 * 109.47108 * 53.97690 * 11 10 9 30 30 H 1.09004 * 109.47362 * 173.96850 * 11 10 9 31 31 H 1.08997 * 109.47751 * 293.97689 * 11 10 9 32 32 H 1.09007 * 109.46887 * 60.00177 * 12 10 9 33 33 H 1.09001 * 109.46942 * 179.97438 * 12 10 9 34 34 H 1.08995 * 109.47406 * 299.99645 * 12 10 9 35 35 H 0.96995 * 120.00149 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.11173 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2055 0.0000 4 6 3.5728 1.2279 0.0005 5 6 4.2834 0.0317 0.0061 6 7 5.6260 -0.2733 0.0001 7 1 6.3453 0.3776 0.0001 8 6 5.7946 -1.6311 0.0002 9 6 4.5986 -2.2407 0.0001 10 6 4.3500 -3.7271 -0.0003 11 6 3.5553 -4.1117 1.2492 12 6 3.5537 -4.1106 -1.2492 13 6 5.6685 -4.4569 -0.0014 14 1 6.5928 -3.9020 -0.0650 15 6 5.6948 -5.8330 0.0787 16 7 4.5724 -6.5165 0.0243 17 14 7.3245 -6.7269 0.2645 18 1 7.6987 -6.7806 1.7006 19 1 7.1947 -8.1082 -0.2652 20 1 8.3757 -6.0025 -0.4941 21 6 3.5809 -1.1870 0.0001 22 6 2.1847 -1.1864 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5141 26 1 1.6459 2.1352 0.0004 27 1 4.0994 2.1708 0.0009 28 1 6.7486 -2.1375 -0.0002 29 1 2.6511 -3.5055 1.3056 30 1 3.2832 -5.1659 1.1966 31 1 4.1652 -3.9376 2.1357 32 1 4.1200 -3.8366 -2.1395 33 1 3.3743 -5.1857 -1.2498 34 1 2.6001 -3.5828 -1.2484 35 1 4.5909 -7.4847 0.0803 36 1 1.6422 -2.1202 -0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527391445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:27 Heat of formation + Delta-G solvation = 44.155227 kcal Electronic energy + Delta-G solvation = -17417.158518 eV Core-core repulsion = 14866.130754 eV Total energy + Delta-G solvation = -2551.027765 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.63851 -36.90823 -35.37866 -31.81174 -31.10103 -29.86759 -27.77742 -25.85866 -25.46399 -25.01637 -22.11059 -20.76284 -20.54204 -18.23863 -16.98595 -16.02318 -15.12430 -14.61539 -14.50505 -13.93944 -13.61125 -13.40510 -13.04169 -12.90234 -12.41214 -11.92551 -11.82795 -11.66775 -11.15514 -10.99734 -10.93240 -10.73347 -10.66866 -10.50217 -10.42658 -10.05177 -9.64401 -9.29915 -8.80005 -8.57257 -8.27501 -7.49937 -6.80400 -5.92727 -4.00584 1.70773 2.12093 3.31563 3.38473 3.39634 3.59243 3.78131 4.44193 4.44502 5.18209 5.32301 5.34637 5.47283 5.58651 5.85657 5.89255 5.93804 5.97756 6.18790 6.37724 6.47267 6.59016 6.70093 6.84847 7.00675 7.05970 7.16282 7.17973 7.18940 7.37161 7.50262 7.69375 7.75618 7.76023 7.87177 8.16093 8.22573 8.32213 8.56079 8.98117 9.63713 11.09418 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034267 B = 0.007003 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.916977 B = 3997.527313 C = 4620.273679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.135 4.135 3 C -0.107 4.107 4 C -0.138 4.138 5 C 0.085 3.915 6 N -0.606 5.606 7 H 0.405 0.595 8 C 0.027 3.973 9 C -0.108 4.108 10 C 0.129 3.871 11 C -0.122 4.122 12 C -0.123 4.123 13 C -0.506 4.506 14 H 0.056 0.944 15 C 0.066 3.934 16 N -0.884 5.884 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.098 4.098 22 C -0.058 4.058 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.171 0.829 29 H 0.010 0.990 30 H 0.079 0.921 31 H 0.025 0.975 32 H 0.022 0.978 33 H 0.082 0.918 34 H 0.009 0.991 35 H 0.259 0.741 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 11.690 0.058 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.137 4.137 3 C -0.126 4.126 4 C -0.159 4.159 5 C -0.023 4.023 6 N -0.210 5.210 7 H 0.240 0.760 8 C -0.096 4.096 9 C -0.114 4.114 10 C 0.128 3.872 11 C -0.180 4.180 12 C -0.180 4.180 13 C -0.544 4.544 14 H 0.074 0.926 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.103 4.103 22 C -0.076 4.076 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.188 0.812 29 H 0.029 0.971 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.101 0.899 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.982 11.516 0.054 11.896 hybrid contribution 1.422 -0.150 0.135 1.436 sum -1.560 11.366 0.189 11.474 Atomic orbital electron populations 1.20647 0.91901 1.01924 1.01483 1.19257 0.95476 0.92954 1.05981 1.20483 0.92845 0.96986 1.02336 1.19842 0.93721 0.94405 1.07919 1.18302 0.84100 0.95219 1.04641 1.41768 1.04959 1.07261 1.66965 0.75963 1.21867 1.00546 0.80501 1.06662 1.21146 0.89542 0.96271 1.04445 1.16636 0.94839 0.83361 0.92401 1.21743 0.96475 1.02323 0.97418 1.21784 0.95906 1.03030 0.97315 1.21113 0.91700 0.91213 1.50350 0.92608 1.24884 0.95970 0.97518 0.95116 1.69847 1.25457 1.06658 1.50327 0.86697 0.84450 0.79060 0.78254 1.20753 1.21385 1.20174 1.19342 0.93167 0.92520 1.05268 1.20265 0.92274 0.97302 0.97761 0.92108 0.92417 0.92018 0.86767 0.87238 0.81241 0.97080 0.90263 0.95621 0.95863 0.89926 0.97193 0.93110 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 9.99 36.01 0.36 -0.92 16 2 C -0.14 -2.15 5.85 -104.98 -0.61 -2.76 16 3 C -0.11 -1.59 9.66 -39.54 -0.38 -1.97 16 4 C -0.14 -2.13 10.08 -39.43 -0.40 -2.53 16 5 C 0.09 1.54 7.28 -83.99 -0.61 0.93 16 6 N -0.61 -10.12 6.07 -10.65 -0.06 -10.19 16 7 H 0.41 5.15 8.96 -40.82 -0.37 4.78 16 8 C 0.03 0.53 10.90 -16.73 -0.18 0.34 16 9 C -0.11 -2.41 4.84 -102.71 -0.50 -2.90 16 10 C 0.13 3.15 0.69 -156.81 -0.11 3.04 16 11 C -0.12 -2.98 8.07 37.16 0.30 -2.68 16 12 C -0.12 -3.00 8.20 37.16 0.30 -2.70 16 13 C -0.51 -13.26 7.77 -34.44 -0.27 -13.53 16 14 H 0.06 1.41 5.68 -52.49 -0.30 1.12 16 15 C 0.07 1.76 5.13 -17.82 -0.09 1.67 16 16 N -0.88 -24.15 9.47 55.43 0.52 -23.62 16 17 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.10 -2.00 6.02 -105.14 -0.63 -2.63 16 22 C -0.06 -1.08 8.67 -39.65 -0.34 -1.43 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 25 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 26 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 28 H 0.17 3.20 6.34 -52.49 -0.33 2.87 16 29 H 0.01 0.23 6.65 -51.92 -0.35 -0.11 16 30 H 0.08 2.07 6.23 -51.93 -0.32 1.75 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 2.18 6.14 -51.93 -0.32 1.86 16 34 H 0.01 0.21 6.80 -51.93 -0.35 -0.14 16 35 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.12 2.27 6.54 -52.49 -0.34 1.92 16 LS Contribution 287.90 15.07 4.34 4.34 Total: -1.00 -28.67 287.90 -8.15 -36.82 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.77 Total: 5.05 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: -3.16 Total: -28.07 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.46 Total: -33.81 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.67 -8.15 -36.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527391445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.977 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds