Wall clock time and date at job start Mon Mar 30 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38834 * 119.73564 * 2 1 4 4 C 1.37742 * 120.66439 * 179.97438 * 3 2 1 5 5 C 1.39130 * 119.78180 * 359.76184 * 4 3 2 6 6 N 1.37680 * 133.50501 * 179.54325 * 5 4 3 7 7 H 0.97005 * 125.06189 * 0.73293 * 6 5 4 8 8 C 1.36829 * 109.87486 * 180.45884 * 6 5 4 9 9 C 1.34236 * 109.93000 * 0.26985 * 8 6 5 10 10 C 1.50699 * 126.50429 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47282 * 119.97112 * 10 9 8 12 12 C 1.53000 * 109.47153 * 239.97319 * 10 9 8 13 13 C 1.50698 * 109.47034 * 359.97438 * 10 9 8 14 14 H 1.07997 * 120.00187 * 356.12252 * 13 10 9 15 15 C 1.37874 * 120.00175 * 176.12656 * 13 10 9 16 16 N 1.31518 * 120.00110 * 6.64038 * 15 13 10 17 17 Si 1.86800 * 120.00190 * 186.64568 * 15 13 10 18 18 H 1.48505 * 109.47255 * 85.10725 * 17 15 13 19 19 H 1.48500 * 109.47428 * 205.10744 * 17 15 13 20 20 H 1.48504 * 109.47072 * 325.11344 * 17 15 13 21 21 C 1.40671 * 119.32732 * 0.51384 * 5 4 3 22 22 C 1.36626 * 119.73569 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47709 * 269.98014 * 1 2 3 24 24 H 1.09003 * 109.47175 * 29.97974 * 1 2 3 25 25 H 1.09001 * 109.47299 * 149.98031 * 1 2 3 26 26 H 1.08000 * 119.66817 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.11022 * 180.02562 * 4 3 2 28 28 H 1.08001 * 125.03654 * 180.24130 * 8 6 5 29 29 H 1.09008 * 109.47108 * 53.97690 * 11 10 9 30 30 H 1.09004 * 109.47362 * 173.96850 * 11 10 9 31 31 H 1.08997 * 109.47751 * 293.97689 * 11 10 9 32 32 H 1.09007 * 109.46887 * 60.00177 * 12 10 9 33 33 H 1.09001 * 109.46942 * 179.97438 * 12 10 9 34 34 H 1.08995 * 109.47406 * 299.99645 * 12 10 9 35 35 H 0.96995 * 120.00149 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.11173 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2055 0.0000 4 6 3.5728 1.2279 0.0005 5 6 4.2834 0.0317 0.0061 6 7 5.6260 -0.2733 0.0001 7 1 6.3453 0.3776 0.0001 8 6 5.7946 -1.6311 0.0002 9 6 4.5986 -2.2407 0.0001 10 6 4.3500 -3.7271 -0.0003 11 6 3.5553 -4.1117 1.2492 12 6 3.5537 -4.1106 -1.2492 13 6 5.6685 -4.4569 -0.0014 14 1 6.5928 -3.9020 -0.0650 15 6 5.6948 -5.8330 0.0787 16 7 4.5724 -6.5165 0.0243 17 14 7.3245 -6.7269 0.2645 18 1 7.6987 -6.7806 1.7006 19 1 7.1947 -8.1082 -0.2652 20 1 8.3757 -6.0025 -0.4941 21 6 3.5809 -1.1870 0.0001 22 6 2.1847 -1.1864 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5141 26 1 1.6459 2.1352 0.0004 27 1 4.0994 2.1708 0.0009 28 1 6.7486 -2.1375 -0.0002 29 1 2.6511 -3.5055 1.3056 30 1 3.2832 -5.1659 1.1966 31 1 4.1652 -3.9376 2.1357 32 1 4.1200 -3.8366 -2.1395 33 1 3.3743 -5.1857 -1.2498 34 1 2.6001 -3.5828 -1.2484 35 1 4.5909 -7.4847 0.0803 36 1 1.6422 -2.1202 -0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527391445.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:26 Heat of formation + Delta-G solvation = 29.651046 kcal Electronic energy + Delta-G solvation = -17417.787467 eV Core-core repulsion = 14866.130754 eV Total energy + Delta-G solvation = -2551.656713 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.02759 -38.22444 -37.19203 -33.58341 -32.37949 -31.36572 -29.30416 -27.46945 -27.09368 -26.95863 -23.42773 -22.48905 -21.85713 -19.83203 -18.47000 -17.77364 -16.68546 -16.43611 -15.78467 -15.29451 -15.10886 -14.78809 -14.48307 -14.24908 -14.12608 -13.57152 -13.45280 -12.93845 -12.88766 -12.85363 -12.55793 -12.43913 -12.27778 -12.03359 -11.89395 -11.86863 -11.61043 -11.08729 -10.51890 -10.32446 -10.20634 -8.82366 -8.24673 -7.94385 -6.08008 0.38637 0.83385 1.45801 1.47492 1.54639 2.07975 2.46716 2.50202 3.10196 3.30452 3.97169 4.16879 4.22169 4.44704 4.54791 4.64362 4.74859 4.86030 4.94932 4.97336 5.05704 5.06454 5.12878 5.19991 5.26603 5.35322 5.43677 5.49927 5.65423 5.71291 5.73552 5.91802 5.99568 6.16262 6.16760 6.30889 6.43072 6.62746 6.95204 7.00169 7.58724 9.06438 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034267 B = 0.007003 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.916977 B = 3997.527313 C = 4620.273679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.129 4.129 3 C -0.104 4.104 4 C -0.131 4.131 5 C 0.072 3.928 6 N -0.590 5.590 7 H 0.425 0.575 8 C 0.033 3.967 9 C -0.152 4.152 10 C 0.125 3.875 11 C -0.109 4.109 12 C -0.110 4.110 13 C -0.519 4.519 14 H 0.060 0.940 15 C 0.020 3.980 16 N -0.908 5.908 17 Si 0.946 3.054 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.269 1.269 21 C -0.128 4.128 22 C -0.090 4.090 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.154 0.846 27 H 0.146 0.854 28 H 0.174 0.826 29 H 0.020 0.980 30 H 0.056 0.944 31 H 0.014 0.986 32 H 0.013 0.987 33 H 0.059 0.941 34 H 0.019 0.981 35 H 0.257 0.743 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 14.511 0.111 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.130 4.130 3 C -0.123 4.123 4 C -0.152 4.152 5 C -0.035 4.035 6 N -0.195 5.195 7 H 0.264 0.736 8 C -0.091 4.091 9 C -0.159 4.159 10 C 0.124 3.876 11 C -0.166 4.166 12 C -0.168 4.168 13 C -0.557 4.557 14 H 0.078 0.922 15 C -0.178 4.178 16 N -0.548 5.548 17 Si 0.773 3.227 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.194 1.194 21 C -0.133 4.133 22 C -0.109 4.109 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.172 0.828 27 H 0.164 0.836 28 H 0.191 0.809 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.066 0.934 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.849 14.376 0.106 14.656 hybrid contribution 1.300 -0.925 0.114 1.599 sum -1.549 13.451 0.220 13.542 Atomic orbital electron populations 1.20719 0.89529 1.03099 1.02581 1.19688 0.97321 0.92426 1.03605 1.20984 0.92912 0.97964 1.00430 1.20301 0.94162 0.94734 1.05982 1.18605 0.84297 0.95483 1.05156 1.41606 1.05411 1.06465 1.65984 0.73568 1.21839 0.99900 0.81928 1.05440 1.20984 0.91549 0.95397 1.07941 1.16535 0.93957 0.85459 0.91634 1.21575 0.96799 1.00921 0.97346 1.21617 0.96405 1.01392 0.97346 1.21483 0.92726 0.91664 1.49837 0.92167 1.25579 0.98796 0.98337 0.95132 1.69989 1.27084 1.06594 1.51110 0.85765 0.81120 0.77760 0.78093 1.20590 1.21535 1.19352 1.19496 0.93879 0.93032 1.06892 1.20313 0.92011 0.98048 1.00500 0.90933 0.89811 0.92345 0.82796 0.83643 0.80870 0.96058 0.92491 0.96717 0.96786 0.92257 0.96229 0.93361 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.27 9.99 71.24 0.71 -1.56 16 2 C -0.13 -3.81 5.85 -20.10 -0.12 -3.92 16 3 C -0.10 -2.64 9.66 22.30 0.22 -2.42 16 4 C -0.13 -3.54 10.08 22.37 0.23 -3.31 16 5 C 0.07 2.48 7.28 39.03 0.28 2.76 16 6 N -0.59 -18.62 6.07 -187.61 -1.14 -19.76 16 7 H 0.43 9.67 8.96 -92.70 -0.83 8.84 16 8 C 0.03 1.31 10.90 83.00 0.91 2.21 16 9 C -0.15 -6.87 4.84 -18.63 -0.09 -6.96 16 10 C 0.13 6.33 0.69 -53.68 -0.04 6.29 16 11 C -0.11 -5.53 8.07 71.98 0.58 -4.95 16 12 C -0.11 -5.60 8.20 71.98 0.59 -5.01 16 13 C -0.52 -27.77 7.77 25.60 0.20 -27.57 16 14 H 0.06 3.08 5.68 -2.91 -0.02 3.06 16 15 C 0.02 1.09 5.13 84.65 0.43 1.52 16 16 N -0.91 -51.16 9.47 21.45 0.20 -50.95 16 17 Si 0.95 42.95 29.54 68.60 2.03 44.97 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C -0.13 -5.22 6.02 -20.20 -0.12 -5.34 16 22 C -0.09 -3.37 8.67 22.23 0.19 -3.18 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 25 H 0.06 1.33 8.07 -2.39 -0.02 1.31 16 26 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 28 H 0.17 6.49 6.34 -2.91 -0.02 6.47 16 29 H 0.02 0.98 6.65 -2.38 -0.02 0.97 16 30 H 0.06 3.11 6.23 -2.39 -0.01 3.10 16 31 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 3.26 6.14 -2.39 -0.01 3.25 16 34 H 0.02 0.90 6.80 -2.39 -0.02 0.89 16 35 H 0.26 13.93 8.31 -92.71 -0.77 13.15 16 36 H 0.10 4.06 6.54 -2.91 -0.02 4.04 16 Total: -1.00 -63.04 287.90 5.32 -57.72 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.26 Total: 19.47 kcal Atomic # 6 Polarization: -55.42 SS G_CDS: 3.97 Total: -51.45 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -0.94 Total: -70.71 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -63.04 5.32 -57.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527391445.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.371 kcal (2) G-P(sol) polarization free energy of solvation -63.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds