Wall clock time and date at job start Mon Mar 30 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39128 * 126.24624 * 2 1 4 4 C 1.39921 * 125.69776 * 0.02562 * 3 2 1 5 5 H 1.08000 * 120.00277 * 359.97438 * 4 3 2 6 6 C 1.40192 * 119.99724 * 179.97438 * 4 3 2 7 7 N 1.30747 * 120.00299 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99773 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47133 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46985 * 119.99782 * 8 6 4 11 11 H 1.48501 * 109.47138 * 239.99747 * 8 6 4 12 12 N 1.38315 * 108.60770 * 180.02562 * 3 2 1 13 13 H 0.96994 * 125.60546 * 179.74167 * 12 3 2 14 14 C 1.38042 * 108.79365 * 359.97438 * 12 3 2 15 15 C 1.38935 * 132.79533 * 179.97438 * 14 12 3 16 16 C 1.37970 * 119.89188 * 180.02562 * 15 14 12 17 17 C 1.38940 * 120.69709 * 0.02562 * 16 15 14 18 18 C 1.50694 * 119.70007 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47290 * 300.02272 * 18 17 16 20 20 C 1.53002 * 109.47289 * 60.02240 * 18 17 16 21 21 C 1.36428 * 120.59495 * 0.02562 * 17 16 15 22 22 C 1.40495 * 119.80416 * 359.97438 * 21 17 16 23 23 H 1.08997 * 109.47207 * 89.97630 * 1 2 3 24 24 H 1.09005 * 109.46599 * 209.97338 * 1 2 3 25 25 H 1.08996 * 109.47136 * 329.97002 * 1 2 3 26 26 H 0.97000 * 120.00366 * 180.02562 * 7 6 4 27 27 H 1.07996 * 120.05600 * 0.05858 * 15 14 12 28 28 H 1.07999 * 119.64847 * 179.97438 * 16 15 14 29 29 H 1.09005 * 109.47270 * 180.02562 * 18 17 16 30 30 H 1.08991 * 109.47037 * 60.00047 * 19 18 17 31 31 H 1.08999 * 109.46967 * 180.02562 * 19 18 17 32 32 H 1.09002 * 109.47319 * 299.99825 * 19 18 17 33 33 H 1.08999 * 109.47307 * 179.97438 * 20 18 17 34 34 H 1.08991 * 109.47146 * 300.00019 * 20 18 17 35 35 H 1.08999 * 109.47089 * 59.99928 * 20 18 17 36 36 H 1.07997 * 120.10038 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3296 1.1220 0.0000 4 6 1.8960 2.4523 0.0005 5 1 0.8394 2.6759 0.0005 6 6 2.8331 3.4950 0.0010 7 7 4.1122 3.2245 0.0015 8 14 2.2541 5.2711 0.0009 9 1 0.7695 5.3078 0.0010 10 1 2.7657 5.9585 1.2138 11 1 2.7668 5.9588 -1.2113 12 7 3.6478 0.7029 -0.0006 13 1 4.4249 1.2833 -0.0043 14 6 3.6756 -0.6772 -0.0004 15 6 4.7139 -1.6004 -0.0012 16 6 4.4330 -2.9512 -0.0012 17 6 3.1189 -3.4023 -0.0010 18 6 2.8378 -4.8828 -0.0005 19 6 3.4516 -5.5190 -1.2492 20 6 3.4508 -5.5179 1.2492 21 6 2.0808 -2.5171 -0.0012 22 6 2.3405 -1.1364 -0.0012 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8903 0.5135 25 1 -0.3633 0.8897 0.5143 26 1 4.7606 3.9459 0.0022 27 1 5.7392 -1.2612 -0.0013 28 1 5.2431 -3.6653 -0.0023 29 1 1.7603 -5.0481 -0.0008 30 1 4.5289 -5.3538 -1.2489 31 1 3.2478 -6.5898 -1.2490 32 1 3.0148 -5.0666 -2.1396 33 1 3.2471 -6.5887 1.2499 34 1 4.5281 -5.3527 1.2495 35 1 3.0135 -5.0648 2.1389 36 1 1.0624 -2.8766 -0.0006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527396553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:38 Heat of formation + Delta-G solvation = 8.713271 kcal Electronic energy + Delta-G solvation = -16984.331654 eV Core-core repulsion = 14431.767011 eV Total energy + Delta-G solvation = -2552.564643 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.77328 -37.11616 -34.22475 -32.85312 -31.65929 -28.95943 -28.16950 -26.79852 -26.22495 -24.39742 -21.85332 -21.19046 -19.41284 -17.88621 -17.32517 -16.12910 -15.24889 -14.81285 -14.41102 -13.64536 -13.32950 -12.92517 -12.82728 -12.80379 -12.64078 -11.96905 -11.95673 -11.65279 -11.58535 -11.50827 -11.44465 -10.93331 -10.81200 -10.73695 -10.43247 -10.31911 -10.17951 -9.78649 -9.57282 -9.44736 -8.33236 -7.18081 -7.04132 -6.39645 -4.47972 2.31172 2.80972 2.88808 2.92568 2.99382 3.71172 3.85778 4.88112 5.01321 5.18175 5.28673 5.32515 5.65376 5.89017 5.90416 5.98567 6.09729 6.13796 6.23999 6.30861 6.43444 6.52882 6.57477 6.60444 6.71518 6.82427 6.88052 6.89970 7.05240 7.18284 7.33554 7.36837 7.60584 7.74519 7.79697 7.99361 8.14325 8.46108 8.63102 8.90668 9.47940 9.86920 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.044705 B = 0.005648 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.173701 B = 4956.117560 C = 5391.230067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 C -0.355 4.355 3 C 0.294 3.706 4 C -0.436 4.436 5 H 0.101 0.899 6 C 0.068 3.932 7 N -0.833 5.833 8 Si 0.934 3.066 9 H -0.257 1.257 10 H -0.271 1.271 11 H -0.271 1.271 12 N -0.588 5.588 13 H 0.423 0.577 14 C 0.038 3.962 15 C -0.117 4.117 16 C -0.164 4.164 17 C -0.100 4.100 18 C -0.047 4.047 19 C -0.139 4.139 20 C -0.139 4.139 21 C -0.130 4.130 22 C -0.033 4.033 23 H 0.028 0.972 24 H 0.033 0.967 25 H 0.042 0.958 26 H 0.291 0.709 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -6.199 0.035 6.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.360 4.360 3 C 0.182 3.818 4 C -0.470 4.470 5 H 0.118 0.882 6 C -0.147 4.147 7 N -0.463 5.463 8 Si 0.758 3.242 9 H -0.180 1.180 10 H -0.197 1.197 11 H -0.196 1.196 12 N -0.203 5.203 13 H 0.271 0.729 14 C -0.068 4.068 15 C -0.138 4.138 16 C -0.184 4.184 17 C -0.102 4.102 18 C -0.066 4.066 19 C -0.197 4.197 20 C -0.197 4.197 21 C -0.149 4.149 22 C -0.038 4.038 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.253 -5.987 0.039 5.993 hybrid contribution 0.406 1.088 -0.011 1.161 sum 0.659 -4.900 0.028 4.944 Atomic orbital electron populations 1.19532 0.92090 0.99119 0.98452 1.19082 0.93717 0.90356 1.32829 1.17890 0.81215 0.92813 0.89842 1.19136 0.95457 0.88232 1.44126 0.88150 1.26142 0.94097 1.03232 0.91207 1.68751 1.02335 1.36112 1.39108 0.85803 0.80369 0.79327 0.78666 1.18020 1.19655 1.19647 1.43102 1.08969 1.03482 1.64731 0.72893 1.18446 0.95052 0.84678 1.08666 1.19770 0.95744 0.92171 1.06143 1.20033 0.95134 0.93541 1.09644 1.18849 0.93241 0.93242 1.04857 1.19952 0.99511 0.92432 0.94673 1.21817 1.00997 0.99020 0.97825 1.21817 1.01001 0.99023 0.97816 1.19937 0.96956 0.91322 1.06652 1.17954 0.92322 0.92533 1.00966 0.95274 0.94786 0.93869 0.89732 0.88510 0.88213 0.91591 0.92749 0.93528 0.92825 0.93527 0.92748 0.92826 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.75 10.12 36.01 0.36 -0.38 16 2 C -0.36 -9.02 6.26 -103.27 -0.65 -9.66 16 3 C 0.29 7.78 6.67 -83.98 -0.56 7.22 16 4 C -0.44 -11.00 9.03 -38.22 -0.35 -11.34 16 5 H 0.10 2.41 7.18 -52.49 -0.38 2.03 16 6 C 0.07 1.60 5.50 -17.28 -0.10 1.51 16 7 N -0.83 -19.82 10.61 55.56 0.59 -19.23 16 8 Si 0.93 17.61 29.56 -169.99 -5.03 12.58 16 9 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 10 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 11 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 12 N -0.59 -15.19 5.84 -8.30 -0.05 -15.24 16 13 H 0.42 10.69 6.18 -40.82 -0.25 10.44 16 14 C 0.04 0.94 7.24 -83.69 -0.61 0.33 16 15 C -0.12 -2.55 10.07 -39.42 -0.40 -2.95 16 16 C -0.16 -3.23 8.68 -39.42 -0.34 -3.58 16 17 C -0.10 -1.95 4.75 -105.02 -0.50 -2.45 16 18 C -0.05 -0.73 3.08 -91.77 -0.28 -1.01 16 19 C -0.14 -1.90 9.00 37.16 0.33 -1.57 16 20 C -0.14 -1.90 9.00 37.16 0.33 -1.57 16 21 C -0.13 -2.83 9.68 -39.38 -0.38 -3.21 16 22 C -0.03 -0.81 6.09 -106.91 -0.65 -1.46 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.89 7.45 -51.93 -0.39 0.50 16 26 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 27 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 28 H 0.10 1.71 7.04 -52.49 -0.37 1.34 16 29 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 30 H 0.05 0.73 7.35 -51.93 -0.38 0.35 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.73 7.36 -51.93 -0.38 0.35 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 1.98 7.91 -52.49 -0.42 1.56 16 LS Contribution 296.02 15.07 4.46 4.46 Total: -1.00 -26.48 296.02 -8.86 -35.34 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.07 Total: 12.21 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -3.77 Total: -30.12 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.54 Total: -34.47 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.48 -8.86 -35.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527396553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.051 kcal (2) G-P(sol) polarization free energy of solvation -26.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds