Wall clock time and date at job start Mon Mar 30 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39128 * 126.24624 * 2 1 4 4 C 1.39921 * 125.69776 * 0.02562 * 3 2 1 5 5 H 1.08000 * 120.00277 * 359.97438 * 4 3 2 6 6 C 1.40192 * 119.99724 * 179.97438 * 4 3 2 7 7 N 1.30747 * 120.00299 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99773 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47133 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46985 * 119.99782 * 8 6 4 11 11 H 1.48501 * 109.47138 * 239.99747 * 8 6 4 12 12 N 1.38315 * 108.60770 * 180.02562 * 3 2 1 13 13 H 0.96994 * 125.60546 * 179.74167 * 12 3 2 14 14 C 1.38042 * 108.79365 * 359.97438 * 12 3 2 15 15 C 1.38935 * 132.79533 * 179.97438 * 14 12 3 16 16 C 1.37970 * 119.89188 * 180.02562 * 15 14 12 17 17 C 1.38940 * 120.69709 * 0.02562 * 16 15 14 18 18 C 1.50694 * 119.70007 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47290 * 300.02272 * 18 17 16 20 20 C 1.53002 * 109.47289 * 60.02240 * 18 17 16 21 21 C 1.36428 * 120.59495 * 0.02562 * 17 16 15 22 22 C 1.40495 * 119.80416 * 359.97438 * 21 17 16 23 23 H 1.08997 * 109.47207 * 89.97630 * 1 2 3 24 24 H 1.09005 * 109.46599 * 209.97338 * 1 2 3 25 25 H 1.08996 * 109.47136 * 329.97002 * 1 2 3 26 26 H 0.97000 * 120.00366 * 180.02562 * 7 6 4 27 27 H 1.07996 * 120.05600 * 0.05858 * 15 14 12 28 28 H 1.07999 * 119.64847 * 179.97438 * 16 15 14 29 29 H 1.09005 * 109.47270 * 180.02562 * 18 17 16 30 30 H 1.08991 * 109.47037 * 60.00047 * 19 18 17 31 31 H 1.08999 * 109.46967 * 180.02562 * 19 18 17 32 32 H 1.09002 * 109.47319 * 299.99825 * 19 18 17 33 33 H 1.08999 * 109.47307 * 179.97438 * 20 18 17 34 34 H 1.08991 * 109.47146 * 300.00019 * 20 18 17 35 35 H 1.08999 * 109.47089 * 59.99928 * 20 18 17 36 36 H 1.07997 * 120.10038 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3296 1.1220 0.0000 4 6 1.8960 2.4523 0.0005 5 1 0.8394 2.6759 0.0005 6 6 2.8331 3.4950 0.0010 7 7 4.1122 3.2245 0.0015 8 14 2.2541 5.2711 0.0009 9 1 0.7695 5.3078 0.0010 10 1 2.7657 5.9585 1.2138 11 1 2.7668 5.9588 -1.2113 12 7 3.6478 0.7029 -0.0006 13 1 4.4249 1.2833 -0.0043 14 6 3.6756 -0.6772 -0.0004 15 6 4.7139 -1.6004 -0.0012 16 6 4.4330 -2.9512 -0.0012 17 6 3.1189 -3.4023 -0.0010 18 6 2.8378 -4.8828 -0.0005 19 6 3.4516 -5.5190 -1.2492 20 6 3.4508 -5.5179 1.2492 21 6 2.0808 -2.5171 -0.0012 22 6 2.3405 -1.1364 -0.0012 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8903 0.5135 25 1 -0.3633 0.8897 0.5143 26 1 4.7606 3.9459 0.0022 27 1 5.7392 -1.2612 -0.0013 28 1 5.2431 -3.6653 -0.0023 29 1 1.7603 -5.0481 -0.0008 30 1 4.5289 -5.3538 -1.2489 31 1 3.2478 -6.5898 -1.2490 32 1 3.0148 -5.0666 -2.1396 33 1 3.2471 -6.5887 1.2499 34 1 4.5281 -5.3527 1.2495 35 1 3.0135 -5.0648 2.1389 36 1 1.0624 -2.8766 -0.0006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527396553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:37 Heat of formation + Delta-G solvation = -3.234712 kcal Electronic energy + Delta-G solvation = -16984.849758 eV Core-core repulsion = 14431.767011 eV Total energy + Delta-G solvation = -2553.082747 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.54387 -38.66284 -35.85304 -34.45047 -33.44067 -30.70371 -29.87172 -27.96370 -27.85328 -26.17191 -23.32946 -22.92735 -21.02481 -19.56044 -19.17760 -17.91125 -16.82903 -16.33161 -15.99560 -15.07852 -15.00921 -14.62446 -14.39183 -14.20123 -14.06662 -13.46338 -13.37391 -13.26963 -13.17854 -13.09400 -12.92793 -12.50227 -12.37453 -12.17855 -11.89631 -11.70478 -11.69240 -11.33383 -11.18886 -11.13563 -10.10347 -8.93147 -8.84130 -8.20340 -6.34371 0.58168 1.13755 1.34552 1.37544 1.54644 2.09211 2.13860 3.05752 3.23244 3.37404 4.00765 4.09524 4.30371 4.49075 4.56616 4.69929 4.73812 4.82187 4.91423 4.92311 5.04914 5.08974 5.09449 5.11166 5.16817 5.22896 5.33142 5.43221 5.48138 5.52668 5.62366 5.65846 5.80723 5.99425 6.04979 6.23112 6.43290 6.62492 6.83685 7.03894 7.59359 8.13934 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.044705 B = 0.005648 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.173701 B = 4956.117560 C = 5391.230067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.385 4.385 3 C 0.258 3.742 4 C -0.468 4.468 5 H 0.102 0.898 6 C 0.030 3.970 7 N -0.856 5.856 8 Si 1.009 2.991 9 H -0.253 1.253 10 H -0.264 1.264 11 H -0.264 1.264 12 N -0.598 5.598 13 H 0.419 0.581 14 C 0.003 3.997 15 C -0.129 4.129 16 C -0.152 4.152 17 C -0.093 4.093 18 C -0.048 4.048 19 C -0.136 4.136 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.062 4.062 23 H 0.034 0.966 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.301 0.699 27 H 0.112 0.888 28 H 0.133 0.867 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 -7.602 0.045 7.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.389 4.389 3 C 0.147 3.853 4 C -0.501 4.501 5 H 0.120 0.880 6 C -0.183 4.183 7 N -0.486 5.486 8 Si 0.829 3.171 9 H -0.176 1.176 10 H -0.189 1.189 11 H -0.189 1.189 12 N -0.213 5.213 13 H 0.266 0.734 14 C -0.103 4.103 15 C -0.150 4.150 16 C -0.171 4.171 17 C -0.094 4.094 18 C -0.066 4.066 19 C -0.194 4.194 20 C -0.193 4.193 21 C -0.161 4.161 22 C -0.067 4.067 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.151 0.849 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.480 -7.426 0.048 7.442 hybrid contribution 0.418 1.327 -0.015 1.391 sum 0.898 -6.100 0.033 6.166 Atomic orbital electron populations 1.19506 0.90233 0.99785 0.98974 1.19617 0.95377 0.90613 1.33330 1.18373 0.81837 0.93891 0.91225 1.19388 0.96075 0.88731 1.45932 0.87994 1.27069 0.93912 1.07256 0.90045 1.68776 1.03326 1.37732 1.38814 0.84719 0.79919 0.73579 0.78926 1.17643 1.18886 1.18884 1.43133 1.08718 1.04014 1.65417 0.73366 1.18915 0.96221 0.84701 1.10414 1.20125 0.95960 0.92804 1.06134 1.20468 0.96380 0.93173 1.07101 1.19360 0.92512 0.95516 1.02011 1.20047 1.00403 0.89540 0.96649 1.21792 1.00849 1.00546 0.96167 1.21792 1.00852 1.00549 0.96156 1.20218 0.98442 0.90546 1.06909 1.18324 0.92456 0.93804 1.02148 0.94707 0.93470 0.93709 0.88768 0.87026 0.84885 0.91066 0.92465 0.90734 0.93859 0.90735 0.92467 0.93852 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.22 10.12 71.24 0.72 -0.50 16 2 C -0.38 -20.26 6.26 -18.99 -0.12 -20.38 16 3 C 0.26 14.30 6.67 38.74 0.26 14.56 16 4 C -0.47 -24.50 9.03 23.15 0.21 -24.29 16 5 H 0.10 5.07 7.18 -2.91 -0.02 5.05 16 6 C 0.03 1.41 5.50 85.33 0.47 1.88 16 7 N -0.86 -41.73 10.61 21.87 0.23 -41.49 16 8 Si 1.01 36.09 29.56 68.60 2.03 38.12 16 9 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 10 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 11 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 12 N -0.60 -32.29 5.84 -180.16 -1.05 -33.34 16 13 H 0.42 22.21 6.18 -92.71 -0.57 21.64 16 14 C 0.00 0.15 7.24 39.06 0.28 0.43 16 15 C -0.13 -5.60 10.07 22.37 0.23 -5.38 16 16 C -0.15 -5.69 8.68 22.37 0.19 -5.50 16 17 C -0.09 -3.43 4.75 -20.12 -0.10 -3.52 16 18 C -0.05 -1.32 3.08 -11.54 -0.04 -1.36 16 19 C -0.14 -3.22 9.00 71.98 0.65 -2.57 16 20 C -0.14 -3.21 9.00 71.98 0.65 -2.57 16 21 C -0.14 -6.17 9.68 22.40 0.22 -5.95 16 22 C -0.06 -3.18 6.09 -21.35 -0.13 -3.31 16 23 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.04 1.90 7.45 -2.39 -0.02 1.88 16 26 H 0.30 13.04 8.29 -92.71 -0.77 12.27 16 27 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 28 H 0.13 4.07 7.04 -2.91 -0.02 4.05 16 29 H 0.07 1.91 7.84 -2.38 -0.02 1.89 16 30 H 0.06 1.32 7.35 -2.39 -0.02 1.30 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.31 7.36 -2.39 -0.02 1.30 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 4.36 7.91 -2.91 -0.02 4.33 16 Total: -1.00 -58.98 296.02 5.20 -53.78 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: 0.50 Total: 41.39 kcal Atomic # 6 Polarization: -61.94 SS G_CDS: 3.49 Total: -58.45 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -0.82 Total: -74.84 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Total: -58.98 5.20 -53.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527396553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.543 kcal (2) G-P(sol) polarization free energy of solvation -58.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds