Wall clock time and date at job start Mon Mar 30 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37791 * 120.11456 * 2 1 4 4 C 1.38785 * 120.66569 * 180.25618 * 3 2 1 5 5 C 1.36662 * 120.52759 * 359.43933 * 4 3 2 6 6 C 1.39592 * 119.76498 * 0.55200 * 5 4 3 7 7 C 1.46486 * 134.03345 * 179.75021 * 6 5 4 8 8 C 1.50704 * 126.50284 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.46980 * 299.98247 * 8 7 6 10 10 C 1.52999 * 109.46893 * 59.97820 * 8 7 6 11 11 C 1.50694 * 109.47265 * 179.97438 * 8 7 6 12 12 H 1.07997 * 120.00256 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00036 * 179.97438 * 11 8 7 14 14 N 1.31519 * 119.99776 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 120.00024 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46725 * 60.00401 * 15 13 11 17 17 H 1.48505 * 109.46818 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46958 * 300.00312 * 15 13 11 19 19 C 1.34236 * 106.99841 * 179.97438 * 7 6 5 20 20 N 1.36834 * 109.93838 * 359.97438 * 19 7 6 21 21 H 0.96999 * 125.06376 * 179.97438 * 20 19 7 22 22 C 1.37688 * 109.87351 * 0.02562 * 20 19 7 23 23 H 1.09003 * 109.46914 * 89.99357 * 1 2 3 24 24 H 1.08996 * 109.47631 * 209.99899 * 1 2 3 25 25 H 1.09006 * 109.47038 * 330.00455 * 1 2 3 26 26 H 1.08002 * 119.66240 * 359.97365 * 3 2 1 27 27 H 1.08002 * 119.73446 * 179.70213 * 4 3 2 28 28 H 1.08002 * 120.11431 * 180.28475 * 5 4 3 29 29 H 1.09002 * 109.47075 * 60.00017 * 9 8 7 30 30 H 1.09000 * 109.47313 * 179.97438 * 9 8 7 31 31 H 1.09003 * 109.47121 * 300.00070 * 9 8 7 32 32 H 1.08998 * 109.47319 * 60.00798 * 10 8 7 33 33 H 1.09008 * 109.46739 * 180.02562 * 10 8 7 34 34 H 1.09002 * 109.47623 * 300.00265 * 10 8 7 35 35 H 0.97005 * 119.99374 * 179.97438 * 14 13 11 36 36 H 1.07996 * 125.02799 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 -0.0053 5 6 4.2916 0.0349 0.0008 6 6 3.6116 -1.1842 0.0009 7 6 4.0353 -2.5865 0.0018 8 6 5.4542 -3.0942 0.0035 9 6 6.1786 -2.5877 -1.2453 10 6 6.1761 -2.5861 1.2532 11 6 5.4485 -4.6012 0.0046 12 1 4.5112 -5.1376 0.0046 13 6 6.6399 -5.2951 0.0057 14 7 7.7813 -4.6418 0.0064 15 14 6.6328 -7.1631 0.0078 16 1 5.9313 -7.6567 -1.2044 17 1 8.0310 -7.6634 0.0094 18 1 5.9305 -7.6540 1.2206 19 6 2.9199 -3.3334 0.0020 20 7 1.8165 -2.5243 0.0018 21 1 0.8976 -2.8351 0.0015 22 6 2.2047 -1.2033 0.0010 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 1.6547 2.1251 -0.0004 27 1 4.1127 2.1482 -0.0101 28 1 5.3715 0.0531 0.0013 29 1 6.1828 -1.4977 -1.2459 30 1 7.2050 -2.9546 -1.2439 31 1 5.6642 -2.9496 -2.1356 32 1 5.6601 -2.9470 2.1429 33 1 7.2026 -2.9530 1.2541 34 1 6.1803 -1.4961 1.2525 35 1 8.6195 -5.1301 0.0075 36 1 2.8970 -4.4131 0.0030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527397171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:16 Heat of formation + Delta-G solvation = 44.516272 kcal Electronic energy + Delta-G solvation = -17445.144941 eV Core-core repulsion = 14894.132833 eV Total energy + Delta-G solvation = -2551.012109 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69292 -36.67799 -35.34741 -32.67221 -31.07148 -28.86351 -27.87167 -26.42261 -25.45628 -25.02199 -21.57427 -21.22797 -20.63820 -17.96445 -17.06388 -16.00296 -15.08760 -14.74653 -14.58246 -14.14516 -13.78620 -13.17234 -12.93264 -12.88064 -12.41799 -12.15862 -11.77120 -11.64411 -11.13530 -10.98289 -10.95268 -10.92747 -10.75238 -10.46089 -10.45782 -10.03446 -9.64320 -9.29697 -8.65431 -8.55790 -8.29163 -7.59381 -6.78325 -5.91604 -4.01171 1.67358 2.17251 3.32237 3.37541 3.39193 3.57612 3.77259 4.44284 4.45834 5.12208 5.22618 5.35251 5.46587 5.56082 5.67352 5.74245 5.84793 6.01105 6.09665 6.36846 6.47907 6.61948 6.69192 6.88009 7.03018 7.05853 7.14330 7.17961 7.19004 7.37172 7.50409 7.69757 7.75826 7.76143 7.86634 8.17745 8.21982 8.33540 8.56278 8.97676 9.63523 11.09682 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.037274 B = 0.006856 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.003572 B = 4082.831247 C = 4642.778262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.111 4.111 3 C -0.111 4.111 4 C -0.162 4.162 5 C -0.063 4.063 6 C -0.098 4.098 7 C -0.107 4.107 8 C 0.129 3.871 9 C -0.124 4.124 10 C -0.124 4.124 11 C -0.504 4.504 12 H 0.055 0.945 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.279 1.279 19 C 0.026 3.974 20 N -0.604 5.604 21 H 0.404 0.596 22 C 0.093 3.907 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.010 0.990 30 H 0.083 0.917 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.083 0.917 34 H 0.010 0.990 35 H 0.259 0.741 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 7.378 -0.030 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.114 4.114 3 C -0.131 4.131 4 C -0.182 4.182 5 C -0.081 4.081 6 C -0.104 4.104 7 C -0.113 4.113 8 C 0.128 3.872 9 C -0.181 4.181 10 C -0.181 4.181 11 C -0.543 4.543 12 H 0.073 0.927 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.205 1.205 19 C -0.097 4.097 20 N -0.208 5.208 21 H 0.240 0.760 22 C -0.015 4.015 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.029 0.971 30 H 0.101 0.899 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.101 0.899 34 H 0.029 0.971 35 H 0.069 0.931 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.173 7.229 -0.028 12.480 hybrid contribution -0.458 -1.246 0.001 1.327 sum -10.631 5.984 -0.027 12.199 Atomic orbital electron populations 1.20612 0.92156 1.01883 1.01471 1.18721 0.94634 0.90515 1.07512 1.20501 0.94111 0.95806 1.02638 1.20476 0.93868 0.97529 1.06303 1.20402 0.99622 0.90659 0.97423 1.19350 0.91484 0.94189 1.05366 1.21148 0.97031 0.88804 1.04328 1.16635 0.84246 0.93909 0.92431 1.21770 1.03319 0.95788 0.97264 1.21770 1.03318 0.95787 0.97266 1.21096 0.92193 0.90459 1.50504 0.92672 1.24889 0.95673 0.97876 0.95134 1.69816 0.97140 1.34700 1.50751 0.86730 0.76968 0.86265 0.78407 1.20452 1.21342 1.20458 1.21861 0.84632 0.96382 1.06780 1.41746 1.08167 1.03971 1.66876 0.76038 1.18094 0.94009 0.84681 1.04737 0.91987 0.92810 0.91795 0.86805 0.86874 0.86182 0.97118 0.89877 0.95850 0.95850 0.89879 0.97115 0.93060 0.81253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.02 36.01 0.36 -0.85 16 2 C -0.11 -1.72 5.89 -104.47 -0.62 -2.33 16 3 C -0.11 -1.65 9.67 -39.54 -0.38 -2.03 16 4 C -0.16 -2.58 9.97 -39.95 -0.40 -2.98 16 5 C -0.06 -1.17 9.16 -39.65 -0.36 -1.54 16 6 C -0.10 -2.02 6.08 -105.14 -0.64 -2.66 16 7 C -0.11 -2.38 4.84 -102.71 -0.50 -2.88 16 8 C 0.13 3.16 0.69 -156.81 -0.11 3.05 16 9 C -0.12 -3.03 8.17 37.16 0.30 -2.73 16 10 C -0.12 -3.03 8.17 37.16 0.30 -2.73 16 11 C -0.50 -13.22 7.79 -34.44 -0.27 -13.48 16 12 H 0.06 1.39 5.65 -52.49 -0.30 1.09 16 13 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 14 N -0.89 -24.13 9.35 55.43 0.52 -23.61 16 15 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.03 0.51 10.91 -16.73 -0.18 0.33 16 20 N -0.60 -10.09 6.07 -10.65 -0.06 -10.16 16 21 H 0.40 5.21 8.87 -40.82 -0.36 4.85 16 22 C 0.09 1.68 6.95 -83.99 -0.58 1.10 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.58 7.99 -51.93 -0.42 0.16 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 28 H 0.12 2.24 6.48 -52.49 -0.34 1.90 16 29 H 0.01 0.23 6.81 -51.93 -0.35 -0.13 16 30 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 2.19 6.07 -51.92 -0.32 1.87 16 34 H 0.01 0.23 6.81 -51.93 -0.35 -0.13 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.17 3.19 6.33 -52.49 -0.33 2.86 16 LS Contribution 287.75 15.07 4.34 4.34 Total: -1.00 -28.59 287.75 -8.15 -36.74 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.75 Total: 5.16 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -3.16 Total: -28.10 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.45 Total: -33.77 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.59 -8.15 -36.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527397171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.252 kcal (2) G-P(sol) polarization free energy of solvation -28.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds