Wall clock time and date at job start Mon Mar 30 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37791 * 120.11456 * 2 1 4 4 C 1.38785 * 120.66569 * 180.25618 * 3 2 1 5 5 C 1.36662 * 120.52759 * 359.43933 * 4 3 2 6 6 C 1.39592 * 119.76498 * 0.55200 * 5 4 3 7 7 C 1.46486 * 134.03345 * 179.75021 * 6 5 4 8 8 C 1.50704 * 126.50284 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.46980 * 299.98247 * 8 7 6 10 10 C 1.52999 * 109.46893 * 59.97820 * 8 7 6 11 11 C 1.50694 * 109.47265 * 179.97438 * 8 7 6 12 12 H 1.07997 * 120.00256 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00036 * 179.97438 * 11 8 7 14 14 N 1.31519 * 119.99776 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 120.00024 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46725 * 60.00401 * 15 13 11 17 17 H 1.48505 * 109.46818 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46958 * 300.00312 * 15 13 11 19 19 C 1.34236 * 106.99841 * 179.97438 * 7 6 5 20 20 N 1.36834 * 109.93838 * 359.97438 * 19 7 6 21 21 H 0.96999 * 125.06376 * 179.97438 * 20 19 7 22 22 C 1.37688 * 109.87351 * 0.02562 * 20 19 7 23 23 H 1.09003 * 109.46914 * 89.99357 * 1 2 3 24 24 H 1.08996 * 109.47631 * 209.99899 * 1 2 3 25 25 H 1.09006 * 109.47038 * 330.00455 * 1 2 3 26 26 H 1.08002 * 119.66240 * 359.97365 * 3 2 1 27 27 H 1.08002 * 119.73446 * 179.70213 * 4 3 2 28 28 H 1.08002 * 120.11431 * 180.28475 * 5 4 3 29 29 H 1.09002 * 109.47075 * 60.00017 * 9 8 7 30 30 H 1.09000 * 109.47313 * 179.97438 * 9 8 7 31 31 H 1.09003 * 109.47121 * 300.00070 * 9 8 7 32 32 H 1.08998 * 109.47319 * 60.00798 * 10 8 7 33 33 H 1.09008 * 109.46739 * 180.02562 * 10 8 7 34 34 H 1.09002 * 109.47623 * 300.00265 * 10 8 7 35 35 H 0.97005 * 119.99374 * 179.97438 * 14 13 11 36 36 H 1.07996 * 125.02799 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 -0.0053 5 6 4.2916 0.0349 0.0008 6 6 3.6116 -1.1842 0.0009 7 6 4.0353 -2.5865 0.0018 8 6 5.4542 -3.0942 0.0035 9 6 6.1786 -2.5877 -1.2453 10 6 6.1761 -2.5861 1.2532 11 6 5.4485 -4.6012 0.0046 12 1 4.5112 -5.1376 0.0046 13 6 6.6399 -5.2951 0.0057 14 7 7.7813 -4.6418 0.0064 15 14 6.6328 -7.1631 0.0078 16 1 5.9313 -7.6567 -1.2044 17 1 8.0310 -7.6634 0.0094 18 1 5.9305 -7.6540 1.2206 19 6 2.9199 -3.3334 0.0020 20 7 1.8165 -2.5243 0.0018 21 1 0.8976 -2.8351 0.0015 22 6 2.2047 -1.2033 0.0010 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 1.6547 2.1251 -0.0004 27 1 4.1127 2.1482 -0.0101 28 1 5.3715 0.0531 0.0013 29 1 6.1828 -1.4977 -1.2459 30 1 7.2050 -2.9546 -1.2439 31 1 5.6642 -2.9496 -2.1356 32 1 5.6601 -2.9470 2.1429 33 1 7.2026 -2.9530 1.2541 34 1 6.1803 -1.4961 1.2525 35 1 8.6195 -5.1301 0.0075 36 1 2.8970 -4.4131 0.0030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527397171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:15 Heat of formation + Delta-G solvation = 30.092529 kcal Electronic energy + Delta-G solvation = -17445.770402 eV Core-core repulsion = 14894.132833 eV Total energy + Delta-G solvation = -2551.637569 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.07845 -38.05371 -37.10075 -34.07888 -32.82271 -30.23457 -29.41977 -27.53342 -27.45986 -26.99827 -22.94102 -22.62712 -22.25534 -19.59655 -18.47228 -17.76210 -16.64737 -16.43254 -16.03870 -15.42828 -15.12065 -14.84497 -14.35870 -14.17439 -13.98288 -13.48508 -13.45866 -13.01716 -12.89815 -12.84720 -12.62389 -12.42724 -12.23134 -12.18017 -12.01362 -11.88569 -11.61103 -11.08779 -10.49188 -10.33732 -10.03188 -8.94224 -8.21306 -7.92878 -6.08231 0.36090 0.86979 1.47265 1.47443 1.54000 2.06514 2.45302 2.50283 3.11304 3.31409 3.97644 4.12616 4.23332 4.41138 4.51667 4.56716 4.78661 4.84870 4.85360 4.93069 5.06599 5.08085 5.12597 5.16974 5.21519 5.38814 5.44708 5.51424 5.71775 5.72468 5.75486 5.83023 5.98662 6.16800 6.17755 6.31632 6.43896 6.62731 6.93729 6.99578 7.58904 9.06913 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.037274 B = 0.006856 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.003572 B = 4082.831247 C = 4642.778262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.108 4.108 3 C -0.111 4.111 4 C -0.153 4.153 5 C -0.095 4.095 6 C -0.129 4.129 7 C -0.151 4.151 8 C 0.125 3.875 9 C -0.111 4.111 10 C -0.111 4.111 11 C -0.518 4.518 12 H 0.060 0.940 13 C 0.019 3.981 14 N -0.909 5.909 15 Si 0.947 3.053 16 H -0.274 1.274 17 H -0.289 1.289 18 H -0.274 1.274 19 C 0.033 3.967 20 N -0.588 5.588 21 H 0.424 0.576 22 C 0.080 3.920 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.153 0.847 27 H 0.140 0.860 28 H 0.106 0.894 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.059 0.941 34 H 0.020 0.980 35 H 0.257 0.743 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.969 8.442 -0.027 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.111 4.111 3 C -0.129 4.129 4 C -0.172 4.172 5 C -0.114 4.114 6 C -0.134 4.134 7 C -0.157 4.157 8 C 0.124 3.876 9 C -0.169 4.169 10 C -0.169 4.169 11 C -0.556 4.556 12 H 0.078 0.922 13 C -0.179 4.179 14 N -0.548 5.548 15 Si 0.773 3.227 16 H -0.200 1.200 17 H -0.215 1.215 18 H -0.200 1.200 19 C -0.092 4.092 20 N -0.193 5.193 21 H 0.262 0.738 22 C -0.028 4.028 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.171 0.829 27 H 0.158 0.842 28 H 0.124 0.876 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.893 8.300 -0.024 15.334 hybrid contribution 0.320 -1.455 -0.002 1.490 sum -12.573 6.845 -0.026 14.316 Atomic orbital electron populations 1.20693 0.89017 1.03443 1.02783 1.19243 0.96945 0.89494 1.05393 1.20996 0.93747 0.97249 1.00949 1.20840 0.94806 0.97496 1.04063 1.20461 0.99299 0.91527 1.00067 1.19511 0.93125 0.93799 1.06984 1.20983 0.96294 0.90638 1.07782 1.16538 0.86122 0.93261 0.91671 1.21610 1.01741 0.96281 0.97293 1.21610 1.01737 0.96280 0.97297 1.21472 0.92442 0.91720 1.50010 0.92173 1.25585 0.95478 1.01742 0.95122 1.69962 0.97421 1.35922 1.51499 0.85795 0.76736 0.81628 0.78491 1.19960 1.21482 1.19976 1.21838 0.85131 0.96646 1.05552 1.41578 1.08433 1.03332 1.65935 0.73759 1.18394 0.93373 0.85809 1.05245 0.90633 0.92081 0.89539 0.82921 0.84208 0.87609 0.96118 0.92170 0.96760 0.96763 0.92173 0.96116 0.93358 0.80841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 10.02 71.24 0.71 -1.19 16 2 C -0.11 -2.97 5.89 -19.77 -0.12 -3.08 16 3 C -0.11 -2.84 9.67 22.29 0.22 -2.63 16 4 C -0.15 -4.51 9.97 22.03 0.22 -4.29 16 5 C -0.09 -3.55 9.16 22.23 0.20 -3.34 16 6 C -0.13 -5.28 6.08 -20.20 -0.12 -5.41 16 7 C -0.15 -6.79 4.84 -18.63 -0.09 -6.88 16 8 C 0.12 6.32 0.69 -53.67 -0.04 6.28 16 9 C -0.11 -5.68 8.17 71.98 0.59 -5.09 16 10 C -0.11 -5.68 8.17 71.98 0.59 -5.09 16 11 C -0.52 -27.69 7.79 25.60 0.20 -27.49 16 12 H 0.06 3.06 5.65 -2.91 -0.02 3.05 16 13 C 0.02 1.03 5.15 84.65 0.44 1.47 16 14 N -0.91 -51.04 9.35 21.45 0.20 -50.83 16 15 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 C 0.03 1.28 10.91 83.00 0.91 2.18 16 20 N -0.59 -18.67 6.07 -187.61 -1.14 -19.81 16 21 H 0.42 9.86 8.87 -92.71 -0.82 9.04 16 22 C 0.08 2.75 6.95 39.03 0.27 3.02 16 23 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.05 7.99 -2.39 -0.02 1.03 16 25 H 0.09 1.25 8.09 -2.38 -0.02 1.23 16 26 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 27 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.11 4.09 6.48 -2.91 -0.02 4.07 16 29 H 0.02 0.95 6.81 -2.39 -0.02 0.94 16 30 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 31 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 3.30 6.07 -2.38 -0.01 3.29 16 34 H 0.02 0.95 6.81 -2.39 -0.02 0.94 16 35 H 0.26 13.92 8.31 -92.70 -0.77 13.15 16 36 H 0.17 6.48 6.33 -2.91 -0.02 6.47 16 Total: -1.00 -62.76 287.75 5.33 -57.43 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.27 Total: 19.85 kcal Atomic # 6 Polarization: -55.51 SS G_CDS: 3.97 Total: -51.54 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -0.94 Total: -70.64 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -62.76 5.33 -57.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527397171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.522 kcal (2) G-P(sol) polarization free energy of solvation -62.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds