Wall clock time and date at job start Mon Mar 30 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39133 * 126.24830 * 2 1 4 4 C 1.39919 * 125.69167 * 359.97438 * 3 2 1 5 5 H 1.08003 * 120.00062 * 134.81239 * 4 3 2 6 6 C 1.40192 * 119.99877 * 314.80817 * 4 3 2 7 7 N 1.30752 * 119.99660 * 152.39407 * 6 4 3 8 8 Si 1.86799 * 120.00119 * 332.39583 * 6 4 3 9 9 H 1.48499 * 109.46977 * 95.56610 * 8 6 4 10 10 H 1.48500 * 109.46818 * 215.56460 * 8 6 4 11 11 H 1.48500 * 109.47112 * 335.56730 * 8 6 4 12 12 N 1.38318 * 108.61189 * 179.97438 * 3 2 1 13 13 C 1.46505 * 125.59619 * 180.02562 * 12 3 2 14 14 C 1.38044 * 108.79800 * 359.73130 * 12 3 2 15 15 C 1.40932 * 126.25465 * 179.97438 * 2 1 3 16 16 C 1.40450 * 133.09320 * 0.04440 * 15 2 1 17 17 C 1.36472 * 119.79880 * 179.97438 * 16 15 2 18 18 C 1.50698 * 119.70027 * 179.97438 * 17 16 15 19 19 C 1.38896 * 120.59682 * 359.97438 * 17 16 15 20 20 C 1.38004 * 120.69984 * 0.02743 * 19 17 16 21 21 C 1.50696 * 120.05346 * 179.97438 * 20 19 17 22 22 H 1.08999 * 109.46871 * 263.87401 * 1 2 3 23 23 H 1.09000 * 109.47248 * 23.87613 * 1 2 3 24 24 H 1.09000 * 109.46814 * 143.87254 * 1 2 3 25 25 H 0.96999 * 119.99978 * 180.02562 * 7 6 4 26 26 H 1.08995 * 109.47232 * 89.97646 * 13 12 3 27 27 H 1.09000 * 109.46942 * 209.97966 * 13 12 3 28 28 H 1.08996 * 109.47202 * 329.97371 * 13 12 3 29 29 H 1.07991 * 120.10099 * 359.97438 * 16 15 2 30 30 H 1.09004 * 109.46994 * 270.01823 * 18 17 16 31 31 H 1.08997 * 109.47380 * 30.01598 * 18 17 16 32 32 H 1.08998 * 109.47530 * 150.01907 * 18 17 16 33 33 H 1.07999 * 119.65072 * 180.02562 * 19 17 16 34 34 H 1.09002 * 109.47076 * 90.00492 * 21 20 19 35 35 H 1.08993 * 109.47072 * 329.99817 * 21 20 19 36 36 H 1.09009 * 109.46708 * 209.99766 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3297 1.1221 0.0000 4 6 1.8959 2.4523 -0.0005 5 1 2.3550 3.1703 0.6630 6 6 0.8654 2.8532 -0.8624 7 7 0.0975 3.8608 -0.5388 8 14 0.5895 1.9480 -2.4729 9 1 -0.4634 0.9174 -2.2873 10 1 0.1589 2.9134 -3.5158 11 1 1.8537 1.2936 -2.8958 12 7 3.6478 0.7030 0.0006 13 6 4.8215 1.5799 0.0013 14 6 3.6758 -0.6772 0.0071 15 6 2.3404 -1.1365 0.0005 16 6 2.0808 -2.5168 0.0003 17 6 3.1193 -3.4022 0.0004 18 6 2.8382 -4.8827 0.0008 19 6 4.4330 -2.9511 0.0002 20 6 4.7140 -1.6000 0.0004 21 6 6.1447 -1.1266 0.0007 22 1 -0.3633 -0.1097 1.0218 23 1 -0.3634 0.9397 -0.4160 24 1 -0.3633 -0.8301 -0.6059 25 1 -0.6157 4.1380 -1.1349 26 1 5.1118 1.7976 1.0291 27 1 5.6456 1.0844 -0.5119 28 1 4.5802 2.5102 -0.5129 29 1 1.0625 -2.8763 0.0001 30 1 2.7702 -5.2394 1.0286 31 1 1.8962 -5.0739 -0.5131 32 1 3.6449 -5.4059 -0.5126 33 1 5.2431 -3.6653 -0.0001 34 1 6.4898 -1.0123 -1.0269 35 1 6.7690 -1.8575 0.5146 36 1 6.2099 -0.1675 0.5147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527397618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:09 Heat of formation + Delta-G solvation = 37.650234 kcal Electronic energy + Delta-G solvation = -17594.748536 eV Core-core repulsion = 15043.438694 eV Total energy + Delta-G solvation = -2551.309842 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.25030 -36.71732 -34.00411 -33.10078 -31.73158 -29.79954 -28.11460 -27.13173 -26.36317 -24.22502 -23.36735 -20.38857 -19.74582 -18.28353 -16.98430 -15.71139 -15.52961 -14.52759 -14.30922 -14.18820 -13.21277 -13.18992 -12.87321 -12.76632 -12.73997 -12.58995 -12.48547 -11.82433 -11.76497 -11.66883 -11.32669 -11.18009 -11.10001 -10.64382 -10.38065 -10.30319 -9.98550 -9.80391 -9.54817 -9.06518 -8.32869 -7.02586 -6.94549 -6.37300 -4.50829 2.05221 2.55128 3.09203 3.18149 3.29602 3.74835 3.95964 4.03344 4.73706 4.92933 5.40077 5.51502 5.57790 5.67475 5.79482 5.85305 5.90375 5.97042 6.04903 6.08213 6.21441 6.25534 6.28738 6.39777 6.55534 6.71554 6.77404 6.83211 6.98630 7.06821 7.15888 7.19514 7.46965 7.62329 7.80471 7.85951 8.06967 8.32055 8.46321 8.72127 8.92530 10.06730 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.009238 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.447826 B = 3030.356700 C = 3713.689916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.313 4.313 3 C 0.277 3.723 4 C -0.485 4.485 5 H 0.092 0.908 6 C 0.114 3.886 7 N -0.802 5.802 8 Si 0.889 3.111 9 H -0.251 1.251 10 H -0.287 1.287 11 H -0.256 1.256 12 N -0.503 5.503 13 C 0.087 3.913 14 C 0.051 3.949 15 C -0.036 4.036 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.100 4.100 19 C -0.159 4.159 20 C -0.086 4.086 21 C -0.112 4.112 22 H 0.037 0.963 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.285 0.715 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 -7.366 -1.090 9.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.317 4.317 3 C 0.171 3.829 4 C -0.517 4.517 5 H 0.110 0.890 6 C -0.107 4.107 7 N -0.427 5.427 8 Si 0.713 3.287 9 H -0.176 1.176 10 H -0.214 1.214 11 H -0.179 1.179 12 N -0.190 5.190 13 C -0.056 4.056 14 C -0.052 4.052 15 C -0.041 4.041 16 C -0.143 4.143 17 C -0.112 4.112 18 C -0.157 4.157 19 C -0.178 4.178 20 C -0.089 4.089 21 C -0.168 4.168 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.784 -6.965 -1.106 9.121 hybrid contribution -0.064 -0.163 -0.608 0.633 sum 5.721 -7.127 -1.714 9.299 Atomic orbital electron populations 1.19930 0.91595 1.00055 0.99279 1.19351 0.94051 0.90257 1.28079 1.18058 0.79749 0.93613 0.91474 1.18127 1.17527 0.93176 1.22916 0.89028 1.25692 0.92076 0.93832 0.99057 1.69701 1.12631 1.24638 1.35735 0.86828 0.81422 0.79776 0.80636 1.17569 1.21386 1.17943 1.44821 1.06216 1.03160 1.64766 1.21772 0.87326 0.95195 1.01260 1.18075 0.94696 0.83206 1.09248 1.18010 0.92146 0.92746 1.01196 1.20015 0.97432 0.91195 1.05620 1.19032 0.93177 0.94551 1.04425 1.20616 1.01065 0.92996 1.00983 1.20099 0.95242 0.93178 1.09290 1.18660 0.92692 0.92226 1.05321 1.20854 0.93646 1.01159 1.01180 0.94387 0.92437 0.94642 0.90427 0.93223 0.91084 0.90143 0.87794 0.92503 0.92587 0.92727 0.87766 0.92308 0.92355 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.19 8.82 36.01 0.32 -0.87 16 2 C -0.31 -7.83 5.20 -103.27 -0.54 -8.37 16 3 C 0.28 7.04 5.39 -83.97 -0.45 6.59 16 4 C -0.48 -12.75 8.90 -38.22 -0.34 -13.09 16 5 H 0.09 2.51 8.06 -52.48 -0.42 2.08 16 6 C 0.11 2.92 4.32 -17.28 -0.07 2.85 16 7 N -0.80 -20.79 13.92 55.56 0.77 -20.01 16 8 Si 0.89 20.60 24.92 -169.99 -4.24 16.36 16 9 H -0.25 -5.66 6.00 56.52 0.34 -5.32 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.50 -11.55 3.24 -118.87 -0.39 -11.93 16 13 C 0.09 1.58 9.57 59.85 0.57 2.15 16 14 C 0.05 1.17 6.74 -83.69 -0.56 0.61 16 15 C -0.04 -0.86 6.09 -106.91 -0.65 -1.51 16 16 C -0.12 -2.60 9.69 -39.39 -0.38 -2.99 16 17 C -0.11 -2.06 5.84 -105.02 -0.61 -2.67 16 18 C -0.10 -1.43 9.99 36.00 0.36 -1.07 16 19 C -0.16 -2.93 9.32 -39.42 -0.37 -3.29 16 20 C -0.09 -1.69 5.89 -104.46 -0.62 -2.30 16 21 C -0.11 -1.73 8.78 36.00 0.32 -1.41 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.06 1.37 3.83 -51.93 -0.20 1.17 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.29 6.72 8.29 -40.82 -0.34 6.38 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.11 5.66 -51.93 -0.29 0.82 16 28 H 0.08 1.45 7.76 -51.93 -0.40 1.05 16 29 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 32 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.06 0.94 5.45 -51.92 -0.28 0.65 16 LS Contribution 286.97 15.07 4.32 4.32 Total: -1.00 -28.37 286.97 -7.57 -35.95 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.02 Total: 0.69 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -3.03 Total: -25.38 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.39 Total: -31.95 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.24 Total: 16.36 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.37 -7.57 -35.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527397618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.597 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds