Wall clock time and date at job start Mon Mar 30 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39133 * 126.24830 * 2 1 4 4 C 1.39919 * 125.69167 * 359.97438 * 3 2 1 5 5 H 1.08003 * 120.00062 * 134.81239 * 4 3 2 6 6 C 1.40192 * 119.99877 * 314.80817 * 4 3 2 7 7 N 1.30752 * 119.99660 * 152.39407 * 6 4 3 8 8 Si 1.86799 * 120.00119 * 332.39583 * 6 4 3 9 9 H 1.48499 * 109.46977 * 95.56610 * 8 6 4 10 10 H 1.48500 * 109.46818 * 215.56460 * 8 6 4 11 11 H 1.48500 * 109.47112 * 335.56730 * 8 6 4 12 12 N 1.38318 * 108.61189 * 179.97438 * 3 2 1 13 13 C 1.46505 * 125.59619 * 180.02562 * 12 3 2 14 14 C 1.38044 * 108.79800 * 359.73130 * 12 3 2 15 15 C 1.40932 * 126.25465 * 179.97438 * 2 1 3 16 16 C 1.40450 * 133.09320 * 0.04440 * 15 2 1 17 17 C 1.36472 * 119.79880 * 179.97438 * 16 15 2 18 18 C 1.50698 * 119.70027 * 179.97438 * 17 16 15 19 19 C 1.38896 * 120.59682 * 359.97438 * 17 16 15 20 20 C 1.38004 * 120.69984 * 0.02743 * 19 17 16 21 21 C 1.50696 * 120.05346 * 179.97438 * 20 19 17 22 22 H 1.08999 * 109.46871 * 263.87401 * 1 2 3 23 23 H 1.09000 * 109.47248 * 23.87613 * 1 2 3 24 24 H 1.09000 * 109.46814 * 143.87254 * 1 2 3 25 25 H 0.96999 * 119.99978 * 180.02562 * 7 6 4 26 26 H 1.08995 * 109.47232 * 89.97646 * 13 12 3 27 27 H 1.09000 * 109.46942 * 209.97966 * 13 12 3 28 28 H 1.08996 * 109.47202 * 329.97371 * 13 12 3 29 29 H 1.07991 * 120.10099 * 359.97438 * 16 15 2 30 30 H 1.09004 * 109.46994 * 270.01823 * 18 17 16 31 31 H 1.08997 * 109.47380 * 30.01598 * 18 17 16 32 32 H 1.08998 * 109.47530 * 150.01907 * 18 17 16 33 33 H 1.07999 * 119.65072 * 180.02562 * 19 17 16 34 34 H 1.09002 * 109.47076 * 90.00492 * 21 20 19 35 35 H 1.08993 * 109.47072 * 329.99817 * 21 20 19 36 36 H 1.09009 * 109.46708 * 209.99766 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3297 1.1221 0.0000 4 6 1.8959 2.4523 -0.0005 5 1 2.3550 3.1703 0.6630 6 6 0.8654 2.8532 -0.8624 7 7 0.0975 3.8608 -0.5388 8 14 0.5895 1.9480 -2.4729 9 1 -0.4634 0.9174 -2.2873 10 1 0.1589 2.9134 -3.5158 11 1 1.8537 1.2936 -2.8958 12 7 3.6478 0.7030 0.0006 13 6 4.8215 1.5799 0.0013 14 6 3.6758 -0.6772 0.0071 15 6 2.3404 -1.1365 0.0005 16 6 2.0808 -2.5168 0.0003 17 6 3.1193 -3.4022 0.0004 18 6 2.8382 -4.8827 0.0008 19 6 4.4330 -2.9511 0.0002 20 6 4.7140 -1.6000 0.0004 21 6 6.1447 -1.1266 0.0007 22 1 -0.3633 -0.1097 1.0218 23 1 -0.3634 0.9397 -0.4160 24 1 -0.3633 -0.8301 -0.6059 25 1 -0.6157 4.1380 -1.1349 26 1 5.1118 1.7976 1.0291 27 1 5.6456 1.0844 -0.5119 28 1 4.5802 2.5102 -0.5129 29 1 1.0625 -2.8763 0.0001 30 1 2.7702 -5.2394 1.0286 31 1 1.8962 -5.0739 -0.5131 32 1 3.6449 -5.4059 -0.5126 33 1 5.2431 -3.6653 -0.0001 34 1 6.4898 -1.0123 -1.0269 35 1 6.7690 -1.8575 0.5146 36 1 6.2099 -0.1675 0.5147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527397618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:09 Heat of formation + Delta-G solvation = 22.792140 kcal Electronic energy + Delta-G solvation = -17595.392831 eV Core-core repulsion = 15043.438694 eV Total energy + Delta-G solvation = -2551.954138 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.91430 -38.28132 -35.74382 -34.81460 -33.20153 -31.50182 -29.80387 -28.65327 -27.76715 -25.87773 -24.96052 -22.07176 -21.29732 -20.02586 -18.81238 -17.33015 -17.30800 -16.17255 -15.97376 -15.69365 -14.83774 -14.66059 -14.41401 -14.35982 -14.16217 -14.01847 -13.85259 -13.55264 -13.43734 -13.20955 -12.81899 -12.70169 -12.68065 -12.28471 -12.16346 -11.91933 -11.60810 -11.36941 -11.24607 -10.94100 -9.95112 -8.88880 -8.69256 -8.07105 -6.45232 0.43356 0.97433 1.26594 1.29813 1.41493 1.92691 2.15548 2.33625 2.94803 3.20191 4.01489 4.11500 4.17702 4.30650 4.46342 4.51946 4.57737 4.61845 4.69361 4.77990 4.82993 4.87005 4.96965 4.99432 5.03814 5.09160 5.12729 5.16322 5.31688 5.37662 5.49284 5.58307 5.84134 5.88383 6.06214 6.21312 6.33813 6.45353 6.68993 6.89395 7.11633 8.20346 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.009238 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.447826 B = 3030.356700 C = 3713.689916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.328 4.328 3 C 0.250 3.750 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.091 3.909 7 N -0.837 5.837 8 Si 0.933 3.067 9 H -0.243 1.243 10 H -0.269 1.269 11 H -0.278 1.278 12 N -0.508 5.508 13 C 0.082 3.918 14 C 0.029 3.971 15 C -0.076 4.076 16 C -0.138 4.138 17 C -0.109 4.109 18 C -0.097 4.097 19 C -0.150 4.150 20 C -0.094 4.094 21 C -0.110 4.110 22 H 0.041 0.959 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.294 0.706 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.435 -10.405 -1.628 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.333 4.333 3 C 0.142 3.858 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.127 4.127 7 N -0.464 5.464 8 Si 0.756 3.244 9 H -0.167 1.167 10 H -0.195 1.195 11 H -0.203 1.203 12 N -0.195 5.195 13 C -0.059 4.059 14 C -0.075 4.075 15 C -0.081 4.081 16 C -0.157 4.157 17 C -0.111 4.111 18 C -0.154 4.154 19 C -0.168 4.168 20 C -0.097 4.097 21 C -0.167 4.167 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.091 0.909 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.533 -9.994 -1.642 12.622 hybrid contribution -0.441 0.516 -0.371 0.774 sum 7.092 -9.478 -2.013 12.007 Atomic orbital electron populations 1.19927 0.91147 0.99934 0.99678 1.19716 0.94828 0.91057 1.27745 1.18058 0.81200 0.93276 0.93236 1.18027 1.18856 0.93413 1.23789 0.91857 1.26117 0.91766 0.94262 1.00534 1.69707 1.13668 1.26029 1.36955 0.86173 0.80291 0.79357 0.78601 1.16739 1.19483 1.20333 1.44944 1.06440 1.03985 1.64088 1.22011 0.86752 0.94697 1.02438 1.18530 0.95501 0.83380 1.10088 1.18347 0.92749 0.93772 1.03258 1.20278 0.98843 0.90533 1.06020 1.19581 0.92776 0.96679 1.02022 1.20676 1.02415 0.89854 1.02446 1.20667 0.96304 0.93392 1.06484 1.19217 0.94135 0.92324 1.03984 1.20911 0.91272 1.01977 1.02514 0.94055 0.93575 0.93211 0.89545 0.91936 0.88173 0.90887 0.87052 0.90956 0.91844 0.90420 0.83989 0.90874 0.89603 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.34 8.82 71.24 0.63 -1.71 16 2 C -0.33 -16.77 5.20 -18.99 -0.10 -16.87 16 3 C 0.25 13.12 5.39 38.74 0.21 13.33 16 4 C -0.51 -28.10 8.90 23.15 0.21 -27.89 16 5 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 6 C 0.09 4.82 4.32 85.33 0.37 5.19 16 7 N -0.84 -44.96 13.92 21.87 0.30 -44.65 16 8 Si 0.93 43.35 24.92 68.60 1.71 45.06 16 9 H -0.24 -10.84 6.00 99.48 0.60 -10.24 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 12 N -0.51 -23.58 3.24 -529.99 -1.72 -25.30 16 13 C 0.08 2.97 9.57 127.77 1.22 4.19 16 14 C 0.03 1.29 6.74 39.06 0.26 1.55 16 15 C -0.08 -3.63 6.09 -21.35 -0.13 -3.76 16 16 C -0.14 -5.59 9.69 22.40 0.22 -5.37 16 17 C -0.11 -3.69 5.84 -20.12 -0.12 -3.80 16 18 C -0.10 -2.34 9.99 71.24 0.71 -1.63 16 19 C -0.15 -4.85 9.32 22.37 0.21 -4.64 16 20 C -0.09 -3.39 5.89 -19.76 -0.12 -3.51 16 21 C -0.11 -2.96 8.78 71.23 0.63 -2.33 16 22 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.05 2.24 3.83 -2.39 -0.01 2.23 16 24 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.29 14.22 8.29 -92.71 -0.77 13.45 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.10 2.96 5.66 -2.39 -0.01 2.95 16 28 H 0.07 2.72 7.76 -2.39 -0.02 2.70 16 29 H 0.11 4.19 8.06 -2.91 -0.02 4.16 16 30 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.06 1.45 8.07 -2.39 -0.02 1.43 16 32 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 33 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.84 8.09 -2.39 -0.02 1.82 16 36 H 0.06 1.69 5.45 -2.38 -0.01 1.68 16 Total: -1.00 -63.33 286.97 5.45 -57.88 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.96 Total: 14.26 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 4.20 Total: -47.25 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -1.41 Total: -69.95 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.71 Total: 45.06 kcal Total: -63.33 5.45 -57.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527397618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.668 kcal (2) G-P(sol) polarization free energy of solvation -63.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds