Wall clock time and date at job start Mon Mar 30 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39119 * 126.25213 * 2 1 4 4 C 1.39921 * 125.69414 * 359.97438 * 3 2 1 5 5 H 1.08002 * 119.99742 * 36.84408 * 4 3 2 6 6 C 1.40186 * 120.00228 * 216.84541 * 4 3 2 7 7 N 1.30747 * 120.00167 * 18.96468 * 6 4 3 8 8 Si 1.86803 * 119.99941 * 198.96237 * 6 4 3 9 9 H 1.48502 * 109.47108 * 90.00116 * 8 6 4 10 10 H 1.48506 * 109.46972 * 210.00150 * 8 6 4 11 11 H 1.48500 * 109.47108 * 329.99931 * 8 6 4 12 12 N 1.38321 * 108.61832 * 179.86953 * 3 2 1 13 13 C 1.46494 * 125.60425 * 180.12291 * 12 3 2 14 14 C 1.38045 * 108.79394 * 0.40568 * 12 3 2 15 15 C 1.40942 * 126.24904 * 180.31703 * 2 1 3 16 16 C 1.40447 * 133.09947 * 359.97438 * 15 2 1 17 17 C 1.36471 * 119.80430 * 179.97438 * 16 15 2 18 18 C 1.38890 * 120.59037 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.64759 * 179.97438 * 18 17 16 20 20 C 1.38006 * 120.70226 * 359.97438 * 18 17 16 21 21 C 1.50700 * 120.05059 * 180.02562 * 20 18 17 22 22 H 1.09005 * 109.47003 * 268.30965 * 1 2 3 23 23 H 1.08998 * 109.46805 * 28.30572 * 1 2 3 24 24 H 1.08998 * 109.46965 * 148.31036 * 1 2 3 25 25 H 0.96999 * 120.00479 * 183.17677 * 7 6 4 26 26 H 1.09004 * 109.46965 * 263.50203 * 13 12 3 27 27 H 1.09006 * 109.47311 * 23.49740 * 13 12 3 28 28 H 1.08999 * 109.47216 * 143.50377 * 13 12 3 29 29 H 1.08004 * 120.09759 * 0.02562 * 16 15 2 30 30 H 1.07996 * 119.69816 * 179.97438 * 17 16 15 31 31 H 1.09001 * 109.46479 * 90.00352 * 19 18 17 32 32 H 1.09001 * 109.47482 * 210.00354 * 19 18 17 33 33 H 1.08999 * 109.47179 * 330.00500 * 19 18 17 34 34 H 1.09005 * 109.47330 * 96.82536 * 21 20 18 35 35 H 1.09000 * 109.46579 * 216.81856 * 21 20 18 36 36 H 1.08994 * 109.47705 * 336.81599 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3297 1.1219 0.0000 4 6 1.8961 2.4522 -0.0005 5 1 1.0168 2.7338 0.5600 6 6 2.6028 3.4196 -0.7285 7 7 3.4176 3.0533 -1.6832 8 14 2.3803 5.2320 -0.3346 9 1 3.3712 5.6404 0.6933 10 1 2.5856 6.0351 -1.5668 11 1 1.0073 5.4613 0.1826 12 7 3.6479 0.7029 0.0030 13 6 4.8215 1.5796 0.0065 14 6 3.6759 -0.6773 -0.0044 15 6 2.3404 -1.1366 -0.0063 16 6 2.0808 -2.5169 -0.0135 17 6 3.1192 -3.4024 -0.0190 18 6 4.4328 -2.9512 -0.0171 19 6 5.5633 -3.9478 -0.0228 20 6 4.7138 -1.6001 -0.0101 21 6 6.1446 -1.1269 -0.0087 22 1 -0.3633 -0.0303 1.0273 23 1 -0.3633 0.9048 -0.4873 24 1 -0.3633 -0.8744 -0.5398 25 1 3.9412 3.7190 -2.1560 26 1 5.1847 1.7046 -1.0136 27 1 4.5475 2.5519 0.4163 28 1 5.6055 1.1348 0.6194 29 1 1.0624 -2.8764 -0.0154 30 1 2.9176 -4.4633 -0.0241 31 1 5.8354 -4.1826 -1.0519 32 1 6.4246 -3.5233 0.4930 33 1 5.2475 -4.8584 0.4863 34 1 6.4504 -0.8913 -1.0281 35 1 6.2316 -0.2350 0.6119 36 1 6.7866 -1.9117 0.3911 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527397855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:09 Heat of formation + Delta-G solvation = 36.122230 kcal Electronic energy + Delta-G solvation = -17628.765867 eV Core-core repulsion = 15077.389765 eV Total energy + Delta-G solvation = -2551.376102 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.02366 -36.68524 -33.72484 -33.21331 -30.75998 -30.01343 -28.05498 -27.45137 -25.36794 -24.38029 -22.96140 -20.60834 -19.78757 -17.82387 -16.87200 -15.55950 -15.04051 -14.76462 -14.36960 -14.24279 -13.34800 -13.09265 -12.65040 -12.52212 -12.39305 -12.06856 -12.04921 -11.74938 -11.53339 -11.43323 -11.16000 -11.10380 -10.95889 -10.87367 -10.72198 -10.21595 -9.96863 -9.71552 -9.57070 -8.98810 -8.08129 -7.08195 -6.76132 -6.20674 -4.46854 2.25321 2.79033 2.89966 2.99523 3.03175 3.82494 3.88839 4.30167 4.86372 5.09103 5.54962 5.66728 5.74259 5.84553 5.95433 6.07004 6.09339 6.23927 6.25971 6.37376 6.45060 6.49875 6.56233 6.68594 6.74808 6.84498 6.90943 6.95957 7.01263 7.08368 7.32958 7.39602 7.63103 7.70230 7.90479 8.04506 8.10244 8.43906 8.61923 8.88699 9.08722 10.03414 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030377 B = 0.008163 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.537180 B = 3429.123174 C = 4205.833290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.333 4.333 3 C 0.308 3.692 4 C -0.467 4.467 5 H 0.096 0.904 6 C 0.077 3.923 7 N -0.801 5.801 8 Si 0.907 3.093 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.259 1.259 12 N -0.478 5.478 13 C 0.107 3.893 14 C 0.054 3.946 15 C -0.039 4.039 16 C -0.130 4.130 17 C -0.135 4.135 18 C -0.144 4.144 19 C -0.096 4.096 20 C -0.082 4.082 21 C -0.116 4.116 22 H 0.028 0.972 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.282 0.718 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -3.102 2.109 5.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.337 4.337 3 C 0.199 3.801 4 C -0.501 4.501 5 H 0.114 0.886 6 C -0.141 4.141 7 N -0.428 5.428 8 Si 0.731 3.269 9 H -0.194 1.194 10 H -0.203 1.203 11 H -0.183 1.183 12 N -0.163 5.163 13 C -0.035 4.035 14 C -0.050 4.050 15 C -0.044 4.044 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.145 4.145 19 C -0.153 4.153 20 C -0.085 4.085 21 C -0.173 4.173 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.071 -2.814 1.903 5.302 hybrid contribution 0.057 0.937 -0.079 0.942 sum 4.128 -1.876 1.824 4.888 Atomic orbital electron populations 1.19555 0.91840 0.99582 0.98349 1.19248 0.93867 0.90330 1.30262 1.17757 0.79898 0.93097 0.89314 1.18717 1.12467 0.90564 1.28314 0.88601 1.25876 0.93821 1.01622 0.92765 1.69879 1.20843 1.37154 1.14939 0.86313 0.80269 0.81529 0.78774 1.19356 1.20291 1.18317 1.44302 1.06130 1.02673 1.63153 1.21855 0.86200 0.93980 1.01464 1.18030 0.94567 0.83353 1.09098 1.17986 0.92200 0.92684 1.01512 1.20074 0.97486 0.91586 1.05740 1.20060 0.92155 0.97629 1.05654 1.18901 0.94044 0.92098 1.09451 1.20601 0.96735 0.97268 1.00650 1.18441 0.92661 0.91644 1.05765 1.20974 0.94031 1.00944 1.01304 0.95323 0.93331 0.94731 0.90678 0.91761 0.91140 0.93152 0.88121 0.88312 0.92926 0.92467 0.92994 0.92421 0.92022 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.79 10.18 36.01 0.37 -0.42 16 2 C -0.33 -8.50 6.26 -103.27 -0.65 -9.15 16 3 C 0.31 8.09 6.09 -83.98 -0.51 7.57 16 4 C -0.47 -11.83 8.52 -38.22 -0.33 -12.16 16 5 H 0.10 2.36 7.92 -52.49 -0.42 1.94 16 6 C 0.08 1.82 3.91 -17.28 -0.07 1.75 16 7 N -0.80 -19.48 10.42 55.56 0.58 -18.90 16 8 Si 0.91 17.71 29.60 -169.99 -5.03 12.67 16 9 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 10 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 11 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 12 N -0.48 -11.87 3.18 -118.87 -0.38 -12.24 16 13 C 0.11 2.31 8.34 59.84 0.50 2.81 16 14 C 0.05 1.32 6.74 -83.69 -0.56 0.75 16 15 C -0.04 -0.97 6.09 -106.91 -0.65 -1.62 16 16 C -0.13 -2.86 10.07 -39.39 -0.40 -3.26 16 17 C -0.14 -2.71 9.61 -39.98 -0.38 -3.09 16 18 C -0.14 -2.83 5.89 -104.46 -0.62 -3.45 16 19 C -0.10 -1.47 9.57 36.01 0.34 -1.12 16 20 C -0.08 -1.75 5.89 -104.47 -0.62 -2.37 16 21 C -0.12 -2.04 8.97 36.01 0.32 -1.72 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 1.05 7.87 -51.93 -0.41 0.65 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 26 H 0.06 1.41 7.26 -51.93 -0.38 1.03 16 27 H 0.07 1.53 6.41 -51.93 -0.33 1.20 16 28 H 0.05 0.95 5.14 -51.93 -0.27 0.68 16 29 H 0.10 2.02 8.06 -52.48 -0.42 1.59 16 30 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.80 5.85 -51.93 -0.30 0.50 16 33 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.06 5.01 -51.93 -0.26 0.80 16 36 H 0.06 0.92 5.67 -51.93 -0.29 0.63 16 LS Contribution 286.83 15.07 4.32 4.32 Total: -1.00 -27.66 286.83 -8.50 -36.16 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.75 Total: 3.46 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -3.25 Total: -25.47 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.20 Total: -31.15 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.66 -8.50 -36.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527397855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.281 kcal (2) G-P(sol) polarization free energy of solvation -27.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds