Wall clock time and date at job start Mon Mar 30 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39119 * 126.25213 * 2 1 4 4 C 1.39921 * 125.69414 * 359.97438 * 3 2 1 5 5 H 1.08002 * 119.99742 * 36.84408 * 4 3 2 6 6 C 1.40186 * 120.00228 * 216.84541 * 4 3 2 7 7 N 1.30747 * 120.00167 * 18.96468 * 6 4 3 8 8 Si 1.86803 * 119.99941 * 198.96237 * 6 4 3 9 9 H 1.48502 * 109.47108 * 90.00116 * 8 6 4 10 10 H 1.48506 * 109.46972 * 210.00150 * 8 6 4 11 11 H 1.48500 * 109.47108 * 329.99931 * 8 6 4 12 12 N 1.38321 * 108.61832 * 179.86953 * 3 2 1 13 13 C 1.46494 * 125.60425 * 180.12291 * 12 3 2 14 14 C 1.38045 * 108.79394 * 0.40568 * 12 3 2 15 15 C 1.40942 * 126.24904 * 180.31703 * 2 1 3 16 16 C 1.40447 * 133.09947 * 359.97438 * 15 2 1 17 17 C 1.36471 * 119.80430 * 179.97438 * 16 15 2 18 18 C 1.38890 * 120.59037 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.64759 * 179.97438 * 18 17 16 20 20 C 1.38006 * 120.70226 * 359.97438 * 18 17 16 21 21 C 1.50700 * 120.05059 * 180.02562 * 20 18 17 22 22 H 1.09005 * 109.47003 * 268.30965 * 1 2 3 23 23 H 1.08998 * 109.46805 * 28.30572 * 1 2 3 24 24 H 1.08998 * 109.46965 * 148.31036 * 1 2 3 25 25 H 0.96999 * 120.00479 * 183.17677 * 7 6 4 26 26 H 1.09004 * 109.46965 * 263.50203 * 13 12 3 27 27 H 1.09006 * 109.47311 * 23.49740 * 13 12 3 28 28 H 1.08999 * 109.47216 * 143.50377 * 13 12 3 29 29 H 1.08004 * 120.09759 * 0.02562 * 16 15 2 30 30 H 1.07996 * 119.69816 * 179.97438 * 17 16 15 31 31 H 1.09001 * 109.46479 * 90.00352 * 19 18 17 32 32 H 1.09001 * 109.47482 * 210.00354 * 19 18 17 33 33 H 1.08999 * 109.47179 * 330.00500 * 19 18 17 34 34 H 1.09005 * 109.47330 * 96.82536 * 21 20 18 35 35 H 1.09000 * 109.46579 * 216.81856 * 21 20 18 36 36 H 1.08994 * 109.47705 * 336.81599 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3297 1.1219 0.0000 4 6 1.8961 2.4522 -0.0005 5 1 1.0168 2.7338 0.5600 6 6 2.6028 3.4196 -0.7285 7 7 3.4176 3.0533 -1.6832 8 14 2.3803 5.2320 -0.3346 9 1 3.3712 5.6404 0.6933 10 1 2.5856 6.0351 -1.5668 11 1 1.0073 5.4613 0.1826 12 7 3.6479 0.7029 0.0030 13 6 4.8215 1.5796 0.0065 14 6 3.6759 -0.6773 -0.0044 15 6 2.3404 -1.1366 -0.0063 16 6 2.0808 -2.5169 -0.0135 17 6 3.1192 -3.4024 -0.0190 18 6 4.4328 -2.9512 -0.0171 19 6 5.5633 -3.9478 -0.0228 20 6 4.7138 -1.6001 -0.0101 21 6 6.1446 -1.1269 -0.0087 22 1 -0.3633 -0.0303 1.0273 23 1 -0.3633 0.9048 -0.4873 24 1 -0.3633 -0.8744 -0.5398 25 1 3.9412 3.7190 -2.1560 26 1 5.1847 1.7046 -1.0136 27 1 4.5475 2.5519 0.4163 28 1 5.6055 1.1348 0.6194 29 1 1.0624 -2.8764 -0.0154 30 1 2.9176 -4.4633 -0.0241 31 1 5.8354 -4.1826 -1.0519 32 1 6.4246 -3.5233 0.4930 33 1 5.2475 -4.8584 0.4863 34 1 6.4504 -0.8913 -1.0281 35 1 6.2316 -0.2350 0.6119 36 1 6.7866 -1.9117 0.3911 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527397855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:08 Heat of formation + Delta-G solvation = 23.222299 kcal Electronic energy + Delta-G solvation = -17629.325250 eV Core-core repulsion = 15077.389765 eV Total energy + Delta-G solvation = -2551.935485 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74828 -38.31992 -35.45686 -34.93607 -32.41180 -31.58968 -29.74634 -29.14334 -26.91931 -26.05134 -24.66303 -22.28135 -21.47764 -19.56208 -18.68305 -17.26993 -16.72753 -16.44369 -15.98101 -15.83742 -14.90763 -14.57056 -14.22307 -14.17322 -14.04149 -13.77563 -13.45567 -13.38345 -13.12150 -12.98494 -12.73932 -12.71810 -12.60741 -12.49332 -12.26214 -11.82248 -11.63888 -11.37585 -11.19675 -10.73001 -9.77658 -8.85665 -8.52020 -7.97661 -6.33327 0.57110 1.11810 1.33636 1.38909 1.50841 2.11338 2.19752 2.56054 3.08614 3.32715 4.07897 4.11197 4.28353 4.41358 4.46863 4.53739 4.70713 4.77563 4.81296 4.82270 4.93188 4.97893 5.04479 5.11262 5.12576 5.14931 5.19529 5.22687 5.39489 5.41768 5.62603 5.71043 5.90584 6.03912 6.11846 6.26783 6.43593 6.60367 6.84825 7.06187 7.28488 8.28807 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.030377 B = 0.008163 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.537180 B = 3429.123174 C = 4205.833290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.365 4.365 3 C 0.272 3.728 4 C -0.498 4.498 5 H 0.089 0.911 6 C 0.046 3.954 7 N -0.829 5.829 8 Si 0.977 3.023 9 H -0.259 1.259 10 H -0.271 1.271 11 H -0.260 1.260 12 N -0.486 5.486 13 C 0.114 3.886 14 C 0.024 3.976 15 C -0.078 4.078 16 C -0.141 4.141 17 C -0.136 4.136 18 C -0.138 4.138 19 C -0.094 4.094 20 C -0.100 4.100 21 C -0.111 4.111 22 H 0.037 0.963 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.290 0.710 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 -4.296 2.403 7.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.370 4.370 3 C 0.163 3.837 4 C -0.531 4.531 5 H 0.107 0.893 6 C -0.170 4.170 7 N -0.457 5.457 8 Si 0.798 3.202 9 H -0.184 1.184 10 H -0.196 1.196 11 H -0.184 1.184 12 N -0.171 5.171 13 C -0.028 4.028 14 C -0.080 4.080 15 C -0.083 4.083 16 C -0.160 4.160 17 C -0.155 4.155 18 C -0.139 4.139 19 C -0.150 4.150 20 C -0.103 4.103 21 C -0.167 4.167 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.152 0.848 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.599 -4.026 2.197 7.237 hybrid contribution -0.376 1.082 -0.183 1.160 sum 5.222 -2.944 2.014 6.324 Atomic orbital electron populations 1.19506 0.90425 0.99638 0.98964 1.19790 0.95358 0.90971 1.30885 1.18126 0.80979 0.93811 0.90779 1.18848 1.13349 0.91274 1.29662 0.89298 1.26588 0.93054 1.05424 0.91898 1.69918 1.21482 1.38799 1.15492 0.85258 0.80141 0.76007 0.78748 1.18355 1.19605 1.18422 1.44443 1.06264 1.03283 1.63133 1.21847 0.86048 0.93553 1.01343 1.18556 0.95615 0.83630 1.10160 1.18373 0.92724 0.93862 1.03324 1.20362 0.99015 0.90872 1.05756 1.20524 0.91891 0.99115 1.04012 1.19553 0.95556 0.92468 1.06296 1.20677 0.95411 0.96792 1.02127 1.18977 0.93879 0.92044 1.05437 1.20973 0.92199 1.01840 1.01652 0.94392 0.94101 0.93595 0.89941 0.92605 0.92044 0.90559 0.86927 0.84819 0.91453 0.90912 0.90863 0.92167 0.92229 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.28 10.18 71.24 0.73 -0.55 16 2 C -0.37 -19.43 6.26 -18.99 -0.12 -19.55 16 3 C 0.27 14.91 6.09 38.74 0.24 15.15 16 4 C -0.50 -26.31 8.52 23.15 0.20 -26.11 16 5 H 0.09 4.61 7.92 -2.91 -0.02 4.59 16 6 C 0.05 2.21 3.91 85.33 0.33 2.54 16 7 N -0.83 -41.24 10.42 21.87 0.23 -41.01 16 8 Si 0.98 36.70 29.60 68.60 2.03 38.73 16 9 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 10 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 11 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 12 N -0.49 -24.85 3.18 -530.01 -1.68 -26.53 16 13 C 0.11 4.98 8.34 127.77 1.07 6.04 16 14 C 0.02 1.21 6.74 39.05 0.26 1.47 16 15 C -0.08 -3.97 6.09 -21.34 -0.13 -4.10 16 16 C -0.14 -6.14 10.07 22.40 0.23 -5.92 16 17 C -0.14 -5.10 9.61 22.01 0.21 -4.89 16 18 C -0.14 -5.01 5.89 -19.76 -0.12 -5.13 16 19 C -0.09 -2.41 9.57 71.24 0.68 -1.73 16 20 C -0.10 -4.14 5.89 -19.76 -0.12 -4.26 16 21 C -0.11 -3.61 8.97 71.24 0.64 -2.97 16 22 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.04 1.86 7.87 -2.39 -0.02 1.84 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.29 13.02 8.30 -92.71 -0.77 12.25 16 26 H 0.06 2.50 7.26 -2.38 -0.02 2.48 16 27 H 0.06 2.74 6.41 -2.38 -0.02 2.73 16 28 H 0.08 2.85 5.14 -2.39 -0.01 2.84 16 29 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.67 5.85 -2.39 -0.01 1.65 16 33 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 34 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.06 1.95 5.01 -2.39 -0.01 1.93 16 36 H 0.09 2.40 5.67 -2.39 -0.01 2.39 16 Total: -1.00 -61.60 286.83 5.75 -55.85 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 1.08 Total: 22.97 kcal Atomic # 6 Polarization: -54.10 SS G_CDS: 4.10 Total: -50.01 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -1.46 Total: -67.54 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -61.60 5.75 -55.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527397855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.067 kcal (2) G-P(sol) polarization free energy of solvation -61.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds