Wall clock time and date at job start Mon Mar 30 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39141 * 126.25197 * 2 1 4 4 C 1.39924 * 125.69100 * 359.45697 * 3 2 1 5 5 H 1.08004 * 119.99728 * 40.50963 * 4 3 2 6 6 C 1.40188 * 119.99718 * 220.49940 * 4 3 2 7 7 N 1.30745 * 120.00002 * 19.65671 * 6 4 3 8 8 Si 1.86799 * 119.99633 * 199.65230 * 6 4 3 9 9 H 1.48502 * 109.47384 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46729 * 120.00605 * 8 6 4 11 11 H 1.48495 * 109.47471 * 240.00217 * 8 6 4 12 12 N 1.38308 * 108.60828 * 179.97438 * 3 2 1 13 13 C 1.46496 * 125.60336 * 179.51630 * 12 3 2 14 14 C 1.38044 * 108.79806 * 359.52637 * 12 3 2 15 15 C 1.38939 * 132.80003 * 180.02562 * 14 12 3 16 16 C 1.37957 * 119.89175 * 179.75481 * 15 14 12 17 17 C 1.50695 * 119.64846 * 180.27647 * 16 15 14 18 18 C 1.38938 * 120.70026 * 0.24757 * 16 15 14 19 19 C 1.36427 * 120.59661 * 0.02562 * 18 16 15 20 20 C 1.50699 * 120.10422 * 179.97438 * 19 18 16 21 21 C 1.40486 * 119.80286 * 359.97438 * 19 18 16 22 22 H 1.08993 * 109.47272 * 266.12458 * 1 2 3 23 23 H 1.09000 * 109.46677 * 26.12861 * 1 2 3 24 24 H 1.09004 * 109.46767 * 146.12319 * 1 2 3 25 25 H 0.97001 * 120.00159 * 184.76066 * 7 6 4 26 26 H 1.09001 * 109.47041 * 264.01928 * 13 12 3 27 27 H 1.08995 * 109.47545 * 24.01903 * 13 12 3 28 28 H 1.09001 * 109.47382 * 144.02194 * 13 12 3 29 29 H 1.07993 * 120.05034 * 0.02562 * 15 14 12 30 30 H 1.09004 * 109.47567 * 89.99450 * 17 16 15 31 31 H 1.09007 * 109.47515 * 209.99798 * 17 16 15 32 32 H 1.08998 * 109.47299 * 329.99402 * 17 16 15 33 33 H 1.08000 * 119.70333 * 180.02562 * 18 16 15 34 34 H 1.08992 * 109.47371 * 95.33151 * 20 19 18 35 35 H 1.08998 * 109.47615 * 215.34014 * 20 19 18 36 36 H 1.09002 * 109.46967 * 335.33182 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1221 0.0000 4 6 1.8961 2.4524 -0.0108 5 1 1.0480 2.7487 0.5887 6 6 2.5627 3.4005 -0.7995 7 7 3.3148 3.0100 -1.7952 8 14 2.3761 5.2216 -0.4280 9 1 1.4777 5.3988 0.7412 10 1 3.7076 5.8031 -0.1213 11 1 1.7950 5.9106 -1.6081 12 7 3.6478 0.7029 0.0006 13 6 4.8216 1.5794 -0.0093 14 6 3.6757 -0.6772 0.0118 15 6 4.7139 -1.6005 0.0175 16 6 4.4329 -2.9510 0.0341 17 6 5.5633 -3.9476 0.0466 18 6 3.1188 -3.4021 0.0400 19 6 2.0807 -2.5170 0.0290 20 6 0.6597 -3.0185 0.0350 21 6 2.3404 -1.1364 0.0121 22 1 -0.3633 -0.0695 1.0252 23 1 -0.3633 0.9227 -0.4526 24 1 -0.3633 -0.8533 -0.5729 25 1 3.8304 3.6602 -2.2976 26 1 5.1745 1.7025 -1.0332 27 1 4.5520 2.5523 0.4015 28 1 5.6117 1.1355 0.5964 29 1 5.7392 -1.2614 0.0134 30 1 5.8357 -4.1752 1.0772 31 1 5.2473 -4.8618 -0.4561 32 1 6.4244 -3.5267 -0.4724 33 1 2.9172 -4.4631 0.0534 34 1 0.2851 -3.0368 1.0584 35 1 0.0380 -2.3563 -0.5677 36 1 0.6279 -4.0253 -0.3816 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527398906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:16 Heat of formation + Delta-G solvation = 29.728122 kcal Electronic energy + Delta-G solvation = -17504.767292 eV Core-core repulsion = 14953.113922 eV Total energy + Delta-G solvation = -2551.653371 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98232 -36.63537 -33.55294 -33.32825 -31.03828 -29.80570 -27.83919 -26.89570 -26.16880 -24.56922 -22.76790 -20.17079 -19.84754 -18.16136 -16.89082 -15.46548 -15.00506 -14.85609 -14.09795 -14.00929 -13.20468 -13.08391 -12.86236 -12.66040 -12.50063 -12.03307 -11.89849 -11.82044 -11.46712 -11.43438 -11.19427 -11.11444 -11.04062 -10.81615 -10.70972 -10.36680 -9.96297 -9.69874 -9.43750 -8.99384 -8.12986 -7.07490 -6.77588 -6.18684 -4.46935 2.24192 2.76621 2.89206 3.01036 3.06793 3.84798 3.91019 4.27651 4.85811 5.03682 5.63689 5.67072 5.82934 5.96887 6.04825 6.07786 6.10910 6.27322 6.30938 6.32529 6.39172 6.44182 6.57463 6.62028 6.72043 6.79702 6.88017 7.02698 7.02911 7.10457 7.32932 7.40827 7.60638 7.70291 7.91418 8.04374 8.10113 8.44848 8.61670 8.87642 9.07740 10.06542 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.029563 B = 0.007928 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.888524 B = 3530.825364 C = 4321.416483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.323 4.323 3 C 0.308 3.692 4 C -0.472 4.472 5 H 0.095 0.905 6 C 0.080 3.920 7 N -0.802 5.802 8 Si 0.902 3.098 9 H -0.259 1.259 10 H -0.273 1.273 11 H -0.274 1.274 12 N -0.481 5.481 13 C 0.112 3.888 14 C 0.051 3.949 15 C -0.117 4.117 16 C -0.138 4.138 17 C -0.093 4.093 18 C -0.140 4.140 19 C -0.094 4.094 20 C -0.104 4.104 21 C -0.037 4.037 22 H 0.028 0.972 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.281 0.719 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 -3.914 2.196 4.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.328 4.328 3 C 0.200 3.800 4 C -0.505 4.505 5 H 0.113 0.887 6 C -0.138 4.138 7 N -0.429 5.429 8 Si 0.726 3.274 9 H -0.182 1.182 10 H -0.198 1.198 11 H -0.199 1.199 12 N -0.166 5.166 13 C -0.031 4.031 14 C -0.053 4.053 15 C -0.138 4.138 16 C -0.139 4.139 17 C -0.150 4.150 18 C -0.159 4.159 19 C -0.094 4.094 20 C -0.161 4.161 21 C -0.042 4.042 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.945 -3.631 1.970 4.566 hybrid contribution 0.318 1.004 -0.029 1.053 sum 2.263 -2.627 1.941 3.973 Atomic orbital electron populations 1.19783 0.91884 0.99915 0.98402 1.19266 0.93872 0.90197 1.29437 1.17774 0.79816 0.93149 0.89272 1.18684 1.15380 0.91181 1.25277 0.88668 1.25841 0.93892 1.01411 0.92649 1.69873 1.22580 1.37493 1.12943 0.86349 0.79230 0.82086 0.79699 1.18230 1.19782 1.19899 1.44415 1.06252 1.02790 1.63094 1.21542 0.86038 0.94154 1.01364 1.18212 0.95023 0.83454 1.08635 1.19596 0.95716 0.91505 1.06977 1.19037 0.94014 0.92666 1.08200 1.20521 0.96403 0.97442 1.00599 1.19969 0.91798 0.97429 1.06739 1.18930 0.94543 0.91605 1.04346 1.20768 0.94434 0.99723 1.01160 1.17829 0.92247 0.92107 1.02061 0.95335 0.93321 0.93850 0.90798 0.91936 0.90933 0.93802 0.88540 0.92902 0.92805 0.92987 0.88289 0.92681 0.91180 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.92 9.51 36.01 0.34 -0.58 16 2 C -0.32 -8.14 6.26 -103.27 -0.65 -8.79 16 3 C 0.31 8.06 6.04 -83.98 -0.51 7.55 16 4 C -0.47 -11.94 8.43 -38.22 -0.32 -12.26 16 5 H 0.10 2.35 7.92 -52.48 -0.42 1.93 16 6 C 0.08 1.89 3.92 -17.28 -0.07 1.82 16 7 N -0.80 -19.69 10.90 55.56 0.61 -19.09 16 8 Si 0.90 17.74 29.61 -169.99 -5.03 12.71 16 9 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 10 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 11 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 12 N -0.48 -11.97 3.18 -118.87 -0.38 -12.35 16 13 C 0.11 2.41 9.19 59.84 0.55 2.96 16 14 C 0.05 1.25 6.81 -83.68 -0.57 0.68 16 15 C -0.12 -2.53 9.61 -39.42 -0.38 -2.90 16 16 C -0.14 -2.71 5.89 -104.47 -0.62 -3.33 16 17 C -0.09 -1.41 9.99 36.00 0.36 -1.05 16 18 C -0.14 -2.78 9.23 -39.98 -0.37 -3.15 16 19 C -0.09 -2.01 5.89 -104.43 -0.62 -2.63 16 20 C -0.10 -1.87 9.44 36.00 0.34 -1.53 16 21 C -0.04 -0.92 5.98 -106.91 -0.64 -1.56 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 1.05 7.81 -51.93 -0.41 0.64 16 24 H 0.04 0.85 5.26 -51.93 -0.27 0.58 16 25 H 0.28 6.29 8.30 -40.82 -0.34 5.96 16 26 H 0.06 1.37 7.38 -51.93 -0.38 0.99 16 27 H 0.07 1.56 6.62 -51.93 -0.34 1.22 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.74 8.08 -51.92 -0.42 0.32 16 32 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 33 H 0.10 1.70 8.05 -52.49 -0.42 1.28 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.27 5.08 -51.93 -0.26 1.00 16 36 H 0.05 0.74 8.04 -51.93 -0.42 0.32 16 LS Contribution 292.46 15.07 4.41 4.41 Total: -1.00 -27.64 292.46 -8.55 -36.19 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.01 Total: 2.90 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -3.14 Total: -24.77 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.23 Total: -31.44 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.64 -8.55 -36.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527398906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.921 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds