Wall clock time and date at job start Mon Mar 30 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39141 * 126.25197 * 2 1 4 4 C 1.39924 * 125.69100 * 359.45697 * 3 2 1 5 5 H 1.08004 * 119.99728 * 40.50963 * 4 3 2 6 6 C 1.40188 * 119.99718 * 220.49940 * 4 3 2 7 7 N 1.30745 * 120.00002 * 19.65671 * 6 4 3 8 8 Si 1.86799 * 119.99633 * 199.65230 * 6 4 3 9 9 H 1.48502 * 109.47384 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46729 * 120.00605 * 8 6 4 11 11 H 1.48495 * 109.47471 * 240.00217 * 8 6 4 12 12 N 1.38308 * 108.60828 * 179.97438 * 3 2 1 13 13 C 1.46496 * 125.60336 * 179.51630 * 12 3 2 14 14 C 1.38044 * 108.79806 * 359.52637 * 12 3 2 15 15 C 1.38939 * 132.80003 * 180.02562 * 14 12 3 16 16 C 1.37957 * 119.89175 * 179.75481 * 15 14 12 17 17 C 1.50695 * 119.64846 * 180.27647 * 16 15 14 18 18 C 1.38938 * 120.70026 * 0.24757 * 16 15 14 19 19 C 1.36427 * 120.59661 * 0.02562 * 18 16 15 20 20 C 1.50699 * 120.10422 * 179.97438 * 19 18 16 21 21 C 1.40486 * 119.80286 * 359.97438 * 19 18 16 22 22 H 1.08993 * 109.47272 * 266.12458 * 1 2 3 23 23 H 1.09000 * 109.46677 * 26.12861 * 1 2 3 24 24 H 1.09004 * 109.46767 * 146.12319 * 1 2 3 25 25 H 0.97001 * 120.00159 * 184.76066 * 7 6 4 26 26 H 1.09001 * 109.47041 * 264.01928 * 13 12 3 27 27 H 1.08995 * 109.47545 * 24.01903 * 13 12 3 28 28 H 1.09001 * 109.47382 * 144.02194 * 13 12 3 29 29 H 1.07993 * 120.05034 * 0.02562 * 15 14 12 30 30 H 1.09004 * 109.47567 * 89.99450 * 17 16 15 31 31 H 1.09007 * 109.47515 * 209.99798 * 17 16 15 32 32 H 1.08998 * 109.47299 * 329.99402 * 17 16 15 33 33 H 1.08000 * 119.70333 * 180.02562 * 18 16 15 34 34 H 1.08992 * 109.47371 * 95.33151 * 20 19 18 35 35 H 1.08998 * 109.47615 * 215.34014 * 20 19 18 36 36 H 1.09002 * 109.46967 * 335.33182 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1221 0.0000 4 6 1.8961 2.4524 -0.0108 5 1 1.0480 2.7487 0.5887 6 6 2.5627 3.4005 -0.7995 7 7 3.3148 3.0100 -1.7952 8 14 2.3761 5.2216 -0.4280 9 1 1.4777 5.3988 0.7412 10 1 3.7076 5.8031 -0.1213 11 1 1.7950 5.9106 -1.6081 12 7 3.6478 0.7029 0.0006 13 6 4.8216 1.5794 -0.0093 14 6 3.6757 -0.6772 0.0118 15 6 4.7139 -1.6005 0.0175 16 6 4.4329 -2.9510 0.0341 17 6 5.5633 -3.9476 0.0466 18 6 3.1188 -3.4021 0.0400 19 6 2.0807 -2.5170 0.0290 20 6 0.6597 -3.0185 0.0350 21 6 2.3404 -1.1364 0.0121 22 1 -0.3633 -0.0695 1.0252 23 1 -0.3633 0.9227 -0.4526 24 1 -0.3633 -0.8533 -0.5729 25 1 3.8304 3.6602 -2.2976 26 1 5.1745 1.7025 -1.0332 27 1 4.5520 2.5523 0.4015 28 1 5.6117 1.1355 0.5964 29 1 5.7392 -1.2614 0.0134 30 1 5.8357 -4.1752 1.0772 31 1 5.2473 -4.8618 -0.4561 32 1 6.4244 -3.5267 -0.4724 33 1 2.9172 -4.4631 0.0534 34 1 0.2851 -3.0368 1.0584 35 1 0.0380 -2.3563 -0.5677 36 1 0.6279 -4.0253 -0.3816 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527398906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:16 Heat of formation + Delta-G solvation = 17.028801 kcal Electronic energy + Delta-G solvation = -17505.317976 eV Core-core repulsion = 14953.113922 eV Total energy + Delta-G solvation = -2552.204055 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.70583 -38.27866 -35.29609 -35.00319 -32.66707 -31.45574 -29.57866 -28.50813 -27.68146 -26.24531 -24.48710 -21.83880 -21.50353 -19.88449 -18.70403 -17.18294 -16.70799 -16.53035 -15.83453 -15.59904 -14.82501 -14.58883 -14.34251 -14.22907 -14.00390 -13.56787 -13.47108 -13.44883 -13.19029 -12.90616 -12.76691 -12.72180 -12.68963 -12.39734 -12.34417 -11.96902 -11.59239 -11.33814 -11.08217 -10.74033 -9.82924 -8.84907 -8.52476 -7.95942 -6.32658 0.56496 1.10704 1.32064 1.39025 1.52900 2.12971 2.21027 2.53638 3.08483 3.29741 4.10661 4.17423 4.24730 4.49937 4.55969 4.61481 4.66965 4.71230 4.86233 4.87245 4.94523 4.94880 4.99776 5.06135 5.11309 5.14495 5.21687 5.26869 5.39740 5.51270 5.63039 5.74894 5.90134 6.03173 6.13778 6.30061 6.43052 6.62033 6.85954 7.05674 7.27470 8.31766 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.029563 B = 0.007928 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.888524 B = 3530.825364 C = 4321.416483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 C -0.349 4.349 3 C 0.269 3.731 4 C -0.501 4.501 5 H 0.088 0.912 6 C 0.048 3.952 7 N -0.833 5.833 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.261 1.261 11 H -0.271 1.271 12 N -0.491 5.491 13 C 0.117 3.883 14 C 0.022 3.978 15 C -0.138 4.138 16 C -0.125 4.125 17 C -0.091 4.091 18 C -0.147 4.147 19 C -0.100 4.100 20 C -0.101 4.101 21 C -0.076 4.076 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.059 0.941 25 H 0.288 0.712 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.134 0.866 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -5.518 2.493 6.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.353 4.353 3 C 0.161 3.839 4 C -0.535 4.535 5 H 0.106 0.894 6 C -0.167 4.167 7 N -0.461 5.461 8 Si 0.794 3.206 9 H -0.183 1.183 10 H -0.185 1.185 11 H -0.196 1.196 12 N -0.176 5.176 13 C -0.025 4.025 14 C -0.082 4.082 15 C -0.159 4.159 16 C -0.127 4.127 17 C -0.148 4.148 18 C -0.166 4.166 19 C -0.101 4.101 20 C -0.158 4.158 21 C -0.081 4.081 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.581 -5.249 2.269 6.274 hybrid contribution 0.169 1.262 -0.119 1.279 sum 2.750 -3.987 2.150 5.299 Atomic orbital electron populations 1.19755 0.90292 1.00050 0.99133 1.19800 0.95391 0.90673 1.29471 1.18148 0.80821 0.93927 0.91048 1.18800 1.16314 0.91925 1.26457 0.89419 1.26544 0.93111 1.05243 0.91777 1.69913 1.23410 1.39148 1.13657 0.85292 0.79506 0.76545 0.79247 1.18308 1.18550 1.19614 1.44576 1.06467 1.03425 1.63091 1.21532 0.85936 0.93875 1.01196 1.18743 0.96208 0.83687 1.09586 1.19918 0.95818 0.92162 1.07981 1.19671 0.95685 0.92774 1.04522 1.20599 0.94979 0.96944 1.02246 1.20434 0.91461 0.98994 1.05705 1.19443 0.97016 0.90700 1.02923 1.20787 0.92106 1.00947 1.01925 1.18217 0.92373 0.93489 1.04043 0.94380 0.94382 0.92206 0.90117 0.92810 0.91554 0.91376 0.87192 0.91063 0.90645 0.91990 0.84797 0.91633 0.91903 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.56 9.51 71.24 0.68 -0.89 16 2 C -0.35 -18.15 6.26 -18.99 -0.12 -18.27 16 3 C 0.27 14.67 6.04 38.75 0.23 14.91 16 4 C -0.50 -26.51 8.43 23.15 0.20 -26.31 16 5 H 0.09 4.56 7.92 -2.91 -0.02 4.54 16 6 C 0.05 2.34 3.92 85.33 0.33 2.68 16 7 N -0.83 -42.07 10.90 21.87 0.24 -41.83 16 8 Si 0.97 37.00 29.61 68.60 2.03 39.03 16 9 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 10 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 11 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 12 N -0.49 -25.25 3.18 -529.99 -1.69 -26.93 16 13 C 0.12 5.17 9.19 127.77 1.17 6.35 16 14 C 0.02 1.10 6.81 39.06 0.27 1.37 16 15 C -0.14 -5.84 9.61 22.37 0.22 -5.62 16 16 C -0.13 -4.59 5.89 -19.76 -0.12 -4.71 16 17 C -0.09 -2.39 9.99 71.23 0.71 -1.68 16 18 C -0.15 -5.39 9.23 22.01 0.20 -5.19 16 19 C -0.10 -4.17 5.89 -19.74 -0.12 -4.29 16 20 C -0.10 -3.39 9.44 71.24 0.67 -2.72 16 21 C -0.08 -3.80 5.98 -21.34 -0.13 -3.92 16 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.04 1.70 7.81 -2.39 -0.02 1.68 16 24 H 0.06 2.38 5.26 -2.38 -0.01 2.36 16 25 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 26 H 0.05 2.43 7.38 -2.39 -0.02 2.42 16 27 H 0.07 2.95 6.62 -2.39 -0.02 2.94 16 28 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.07 1.69 8.08 -2.38 -0.02 1.67 16 32 H 0.06 1.52 8.08 -2.39 -0.02 1.50 16 33 H 0.13 3.95 8.05 -2.91 -0.02 3.93 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 2.18 5.08 -2.39 -0.01 2.17 16 36 H 0.08 2.10 8.04 -2.39 -0.02 2.08 16 Total: -1.00 -61.38 292.46 5.86 -55.52 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 1.07 Total: 22.51 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 4.21 Total: -48.30 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -1.45 Total: -68.76 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -61.38 5.86 -55.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527398906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.548 kcal (2) G-P(sol) polarization free energy of solvation -61.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds