Wall clock time and date at job start Mon Mar 30 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38832 * 119.66420 * 2 1 4 4 C 1.36629 * 120.52376 * 179.69904 * 3 2 1 5 5 C 1.39624 * 119.76794 * 0.28388 * 4 3 2 6 6 C 1.40669 * 119.92842 * 359.97438 * 5 4 3 7 7 C 1.37747 * 119.66804 * 180.24609 * 2 1 3 8 8 N 1.37689 * 107.16269 * 180.02562 * 6 5 4 9 9 H 0.96993 * 125.06658 * 179.97438 * 8 6 5 10 10 C 1.36829 * 109.87101 * 359.97438 * 8 6 5 11 11 C 1.34240 * 109.93090 * 0.02562 * 10 8 6 12 12 C 1.50699 * 126.50353 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47474 * 119.99689 * 12 11 10 14 14 C 1.52999 * 109.47275 * 240.00052 * 12 11 10 15 15 C 1.50704 * 109.46999 * 359.97438 * 12 11 10 16 16 H 1.07994 * 120.00048 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99967 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00262 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99861 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46932 * 60.00142 * 19 17 15 21 21 H 1.48502 * 109.47169 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47019 * 299.99845 * 19 17 15 23 23 H 1.08994 * 109.47381 * 89.99728 * 1 2 3 24 24 H 1.08999 * 109.47084 * 209.99909 * 1 2 3 25 25 H 1.09007 * 109.47119 * 329.99841 * 1 2 3 26 26 H 1.08002 * 119.74071 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.11783 * 180.25186 * 4 3 2 28 28 H 1.08006 * 120.11087 * 0.03118 * 7 2 1 29 29 H 1.08000 * 125.03787 * 179.97438 * 10 8 6 30 30 H 1.08998 * 109.47288 * 59.99750 * 13 12 11 31 31 H 1.09003 * 109.46914 * 180.02562 * 13 12 11 32 32 H 1.09006 * 109.47121 * 299.99780 * 13 12 11 33 33 H 1.08999 * 109.47207 * 59.99087 * 14 12 11 34 34 H 1.08995 * 109.47575 * 179.97438 * 14 12 11 35 35 H 1.09007 * 109.47042 * 299.99666 * 14 12 11 36 36 H 0.97003 * 120.00112 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2064 0.0000 4 6 3.5602 1.2269 0.0062 5 6 4.2715 0.0254 0.0065 6 6 3.5801 -1.1996 0.0011 7 6 2.1888 -1.1969 -0.0051 8 7 4.5260 -2.2001 0.0034 9 1 4.3320 -3.1504 0.0011 10 6 5.7806 -1.6540 0.0096 11 6 5.6964 -0.3142 0.0119 12 6 6.8492 0.6564 0.0179 13 6 6.7794 1.5390 -1.2298 14 6 6.7705 1.5341 1.2686 15 6 8.1486 -0.1070 0.0216 16 1 8.1404 -1.1870 0.0194 17 6 9.3478 0.5733 0.0279 18 7 9.3578 1.8883 0.0311 19 14 10.9584 -0.3730 0.0318 20 1 11.0353 -1.2244 -1.1825 21 1 12.0945 0.5833 0.0391 22 1 11.0260 -1.2303 1.2425 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.6444 2.1360 -0.0004 27 1 4.0880 2.1691 0.0102 28 1 1.6451 -2.1301 -0.0097 29 1 6.7020 -2.2173 0.0129 30 1 5.8396 2.0911 -1.2322 31 1 7.6135 2.2407 -1.2256 32 1 6.8356 0.9137 -2.1209 33 1 6.8202 0.9053 2.1575 34 1 7.6045 2.2358 1.2732 35 1 5.8306 2.0863 1.2664 36 1 10.2016 2.3669 0.0351 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527401682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:11 Heat of formation + Delta-G solvation = 44.290235 kcal Electronic energy + Delta-G solvation = -17339.874203 eV Core-core repulsion = 14788.852293 eV Total energy + Delta-G solvation = -2551.021910 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63486 -36.92166 -35.35197 -32.07153 -30.99982 -29.50892 -28.16538 -26.05284 -25.45680 -24.68709 -22.23905 -20.89945 -20.27196 -18.34816 -16.93195 -15.86822 -15.29937 -14.63110 -14.54947 -13.98528 -13.60377 -13.37645 -13.10692 -12.99567 -12.39778 -11.97243 -11.77610 -11.65157 -11.18237 -10.98507 -10.95885 -10.74904 -10.74527 -10.45997 -10.44894 -10.03274 -9.65081 -9.29443 -8.75146 -8.55578 -8.29093 -7.54518 -6.79562 -5.91334 -4.00900 1.68642 2.15139 3.32520 3.37789 3.39484 3.58371 3.77038 4.44568 4.45418 5.15539 5.26417 5.35521 5.49104 5.57327 5.73130 5.76643 5.94327 5.97650 6.06719 6.34347 6.47590 6.60382 6.70223 6.88730 7.04365 7.05857 7.13124 7.18227 7.18921 7.37124 7.50502 7.69963 7.76129 7.76277 7.86840 8.17868 8.22871 8.33672 8.56496 8.97879 9.63787 11.09941 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.042283 B = 0.006398 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.047759 B = 4375.283986 C = 4846.266583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.080 4.080 3 C -0.163 4.163 4 C -0.055 4.055 5 C -0.104 4.104 6 C 0.092 3.908 7 C -0.141 4.141 8 N -0.606 5.606 9 H 0.405 0.595 10 C 0.024 3.976 11 C -0.106 4.106 12 C 0.128 3.872 13 C -0.124 4.124 14 C -0.124 4.124 15 C -0.504 4.504 16 H 0.055 0.945 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.279 1.279 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.170 0.830 30 H 0.010 0.990 31 H 0.083 0.917 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.083 0.917 35 H 0.010 0.990 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.107 -4.200 -0.066 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.081 4.081 3 C -0.183 4.183 4 C -0.074 4.074 5 C -0.110 4.110 6 C -0.016 4.016 7 C -0.162 4.162 8 N -0.209 5.209 9 H 0.240 0.760 10 C -0.098 4.098 11 C -0.112 4.112 12 C 0.127 3.873 13 C -0.181 4.181 14 C -0.181 4.181 15 C -0.542 4.542 16 H 0.073 0.927 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.205 1.205 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.131 0.869 27 H 0.139 0.861 28 H 0.127 0.873 29 H 0.187 0.813 30 H 0.029 0.971 31 H 0.101 0.899 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.101 0.899 35 H 0.029 0.971 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.921 -4.171 -0.062 12.630 hybrid contribution 0.881 -1.094 -0.005 1.405 sum -11.040 -5.265 -0.068 12.231 Atomic orbital electron populations 1.20688 0.91832 1.02039 1.01638 1.19368 0.95033 0.92487 1.01226 1.20382 0.93978 0.96782 1.07124 1.20397 0.93208 0.97005 0.96764 1.19353 0.93825 0.91929 1.05874 1.18268 0.90481 0.88758 1.04066 1.19679 0.90011 0.97486 1.09052 1.41765 1.05120 1.07085 1.66971 0.75972 1.21857 0.86307 0.94714 1.06901 1.21150 0.92146 0.93709 1.04229 1.16640 0.88201 0.89987 0.92432 1.21768 0.99343 0.99754 0.97263 1.21769 0.99334 0.99759 0.97268 1.21092 0.90102 0.92525 1.50485 0.92682 1.24886 0.98717 0.94832 0.95140 1.69809 1.25900 1.05942 1.50761 0.86729 0.83497 0.79727 0.78408 1.20452 1.21355 1.20457 0.91815 0.92260 0.91903 0.86895 0.86106 0.87311 0.81259 0.97121 0.89880 0.95854 0.95854 0.89866 0.97133 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.99 36.00 0.36 -0.79 16 2 C -0.08 -1.19 5.88 -104.58 -0.61 -1.80 16 3 C -0.16 -2.61 9.62 -39.94 -0.38 -2.99 16 4 C -0.06 -1.04 9.16 -39.65 -0.36 -1.40 16 5 C -0.10 -2.15 6.08 -105.14 -0.64 -2.78 16 6 C 0.09 1.68 7.28 -83.99 -0.61 1.07 16 7 C -0.14 -2.21 9.71 -39.43 -0.38 -2.59 16 8 N -0.61 -10.16 6.07 -10.65 -0.06 -10.22 16 9 H 0.41 5.18 8.96 -40.82 -0.37 4.81 16 10 C 0.02 0.48 10.91 -16.73 -0.18 0.30 16 11 C -0.11 -2.37 4.84 -102.71 -0.50 -2.87 16 12 C 0.13 3.15 0.69 -156.81 -0.11 3.04 16 13 C -0.12 -3.03 8.17 37.16 0.30 -2.73 16 14 C -0.12 -3.03 8.17 37.16 0.30 -2.73 16 15 C -0.50 -13.20 7.79 -34.44 -0.27 -13.47 16 16 H 0.06 1.39 5.65 -52.49 -0.30 1.09 16 17 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 18 N -0.89 -24.12 9.35 55.43 0.52 -23.60 16 19 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 25 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 27 H 0.12 2.25 6.48 -52.48 -0.34 1.91 16 28 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.17 3.20 6.33 -52.49 -0.33 2.86 16 30 H 0.01 0.23 6.81 -51.93 -0.35 -0.13 16 31 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 35 H 0.01 0.22 6.81 -51.92 -0.35 -0.13 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 287.89 15.07 4.34 4.34 Total: -1.00 -28.63 287.89 -8.17 -36.80 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.76 Total: 5.15 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -3.18 Total: -28.10 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.45 Total: -33.83 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.63 -8.17 -36.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527401682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.087 kcal (2) G-P(sol) polarization free energy of solvation -28.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds