Wall clock time and date at job start Mon Mar 30 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38832 * 119.66420 * 2 1 4 4 C 1.36629 * 120.52376 * 179.69904 * 3 2 1 5 5 C 1.39624 * 119.76794 * 0.28388 * 4 3 2 6 6 C 1.40669 * 119.92842 * 359.97438 * 5 4 3 7 7 C 1.37747 * 119.66804 * 180.24609 * 2 1 3 8 8 N 1.37689 * 107.16269 * 180.02562 * 6 5 4 9 9 H 0.96993 * 125.06658 * 179.97438 * 8 6 5 10 10 C 1.36829 * 109.87101 * 359.97438 * 8 6 5 11 11 C 1.34240 * 109.93090 * 0.02562 * 10 8 6 12 12 C 1.50699 * 126.50353 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47474 * 119.99689 * 12 11 10 14 14 C 1.52999 * 109.47275 * 240.00052 * 12 11 10 15 15 C 1.50704 * 109.46999 * 359.97438 * 12 11 10 16 16 H 1.07994 * 120.00048 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99967 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00262 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99861 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46932 * 60.00142 * 19 17 15 21 21 H 1.48502 * 109.47169 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47019 * 299.99845 * 19 17 15 23 23 H 1.08994 * 109.47381 * 89.99728 * 1 2 3 24 24 H 1.08999 * 109.47084 * 209.99909 * 1 2 3 25 25 H 1.09007 * 109.47119 * 329.99841 * 1 2 3 26 26 H 1.08002 * 119.74071 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.11783 * 180.25186 * 4 3 2 28 28 H 1.08006 * 120.11087 * 0.03118 * 7 2 1 29 29 H 1.08000 * 125.03787 * 179.97438 * 10 8 6 30 30 H 1.08998 * 109.47288 * 59.99750 * 13 12 11 31 31 H 1.09003 * 109.46914 * 180.02562 * 13 12 11 32 32 H 1.09006 * 109.47121 * 299.99780 * 13 12 11 33 33 H 1.08999 * 109.47207 * 59.99087 * 14 12 11 34 34 H 1.08995 * 109.47575 * 179.97438 * 14 12 11 35 35 H 1.09007 * 109.47042 * 299.99666 * 14 12 11 36 36 H 0.97003 * 120.00112 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2064 0.0000 4 6 3.5602 1.2269 0.0062 5 6 4.2715 0.0254 0.0065 6 6 3.5801 -1.1996 0.0011 7 6 2.1888 -1.1969 -0.0051 8 7 4.5260 -2.2001 0.0034 9 1 4.3320 -3.1504 0.0011 10 6 5.7806 -1.6540 0.0096 11 6 5.6964 -0.3142 0.0119 12 6 6.8492 0.6564 0.0179 13 6 6.7794 1.5390 -1.2298 14 6 6.7705 1.5341 1.2686 15 6 8.1486 -0.1070 0.0216 16 1 8.1404 -1.1870 0.0194 17 6 9.3478 0.5733 0.0279 18 7 9.3578 1.8883 0.0311 19 14 10.9584 -0.3730 0.0318 20 1 11.0353 -1.2244 -1.1825 21 1 12.0945 0.5833 0.0391 22 1 11.0260 -1.2303 1.2425 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.6444 2.1360 -0.0004 27 1 4.0880 2.1691 0.0102 28 1 1.6451 -2.1301 -0.0097 29 1 6.7020 -2.2173 0.0129 30 1 5.8396 2.0911 -1.2322 31 1 7.6135 2.2407 -1.2256 32 1 6.8356 0.9137 -2.1209 33 1 6.8202 0.9053 2.1575 34 1 7.6045 2.2358 1.2732 35 1 5.8306 2.0863 1.2664 36 1 10.2016 2.3669 0.0351 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527401682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:11 Heat of formation + Delta-G solvation = 29.888541 kcal Electronic energy + Delta-G solvation = -17340.498708 eV Core-core repulsion = 14788.852293 eV Total energy + Delta-G solvation = -2551.646415 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03238 -38.23967 -37.15966 -33.68598 -32.52951 -30.85245 -29.65799 -27.58040 -27.45902 -26.35065 -23.55412 -22.60003 -21.59738 -19.99153 -18.37749 -17.67244 -16.78681 -16.43458 -15.90412 -15.31326 -15.07362 -14.77918 -14.54493 -14.27853 -14.09814 -13.52924 -13.36059 -12.90521 -12.85482 -12.79054 -12.62908 -12.41781 -12.34819 -12.01850 -11.94975 -11.87534 -11.61575 -11.08925 -10.48966 -10.34037 -10.14965 -8.87970 -8.24543 -7.92498 -6.07795 0.36371 0.84266 1.47647 1.47837 1.54340 2.06761 2.45102 2.50632 3.09806 3.31764 3.97848 4.15121 4.22692 4.41848 4.54029 4.66700 4.72594 4.85340 4.94983 4.97809 5.03054 5.06727 5.10126 5.21578 5.26862 5.35774 5.44399 5.50689 5.71098 5.72592 5.75782 5.84042 5.98726 6.16871 6.17993 6.31298 6.43784 6.62879 6.94647 6.99948 7.59289 9.07255 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.042283 B = 0.006398 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.047759 B = 4375.283986 C = 4846.266583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.076 4.076 3 C -0.158 4.158 4 C -0.083 4.083 5 C -0.137 4.137 6 C 0.083 3.917 7 C -0.140 4.140 8 N -0.590 5.590 9 H 0.425 0.575 10 C 0.030 3.970 11 C -0.149 4.149 12 C 0.124 3.876 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.517 4.517 16 H 0.060 0.940 17 C 0.019 3.981 18 N -0.908 5.908 19 Si 0.947 3.053 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.274 1.274 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.138 0.862 27 H 0.108 0.892 28 H 0.142 0.858 29 H 0.175 0.825 30 H 0.020 0.980 31 H 0.060 0.940 32 H 0.013 0.987 33 H 0.013 0.987 34 H 0.060 0.940 35 H 0.020 0.980 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.399 -5.768 -0.075 15.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.078 4.078 3 C -0.177 4.177 4 C -0.101 4.101 5 C -0.142 4.142 6 C -0.025 4.025 7 C -0.161 4.161 8 N -0.195 5.195 9 H 0.264 0.736 10 C -0.094 4.094 11 C -0.155 4.155 12 C 0.123 3.877 13 C -0.169 4.169 14 C -0.169 4.169 15 C -0.556 4.556 16 H 0.078 0.922 17 C -0.179 4.179 18 N -0.548 5.548 19 Si 0.774 3.226 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.200 1.200 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.156 0.844 27 H 0.126 0.874 28 H 0.160 0.840 29 H 0.192 0.808 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.239 -5.769 -0.072 15.364 hybrid contribution 1.458 -0.585 -0.004 1.572 sum -12.781 -6.355 -0.076 14.274 Atomic orbital electron populations 1.20763 0.88498 1.03624 1.03037 1.19895 0.97375 0.91603 0.98891 1.20736 0.92974 0.98693 1.05294 1.20461 0.94583 0.96154 0.98929 1.19500 0.93287 0.93665 1.07757 1.18559 0.91602 0.88083 1.04293 1.20102 0.88915 0.99324 1.07756 1.41609 1.03839 1.08036 1.65999 0.73593 1.21835 0.87594 0.94197 1.05745 1.20988 0.92547 0.94397 1.07594 1.16548 0.89014 0.90406 0.91698 1.21608 0.98800 0.99227 0.97275 1.21609 0.98791 0.99227 0.97288 1.21459 0.91077 0.93028 1.49988 0.92209 1.25580 1.01614 0.95601 0.95135 1.69955 1.26252 1.07078 1.51504 0.85794 0.79871 0.78484 0.78486 1.19971 1.21509 1.19982 0.90326 0.90534 0.90603 0.84401 0.87436 0.84042 0.80841 0.96096 0.92168 0.96764 0.96768 0.92152 0.96110 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 9.99 71.23 0.71 -1.03 16 2 C -0.08 -1.99 5.88 -19.84 -0.12 -2.11 16 3 C -0.16 -4.70 9.62 22.04 0.21 -4.49 16 4 C -0.08 -3.09 9.16 22.23 0.20 -2.88 16 5 C -0.14 -5.61 6.08 -20.20 -0.12 -5.73 16 6 C 0.08 2.86 7.28 39.03 0.28 3.15 16 7 C -0.14 -3.90 9.71 22.37 0.22 -3.68 16 8 N -0.59 -18.77 6.07 -187.61 -1.14 -19.91 16 9 H 0.43 9.79 8.96 -92.71 -0.83 8.96 16 10 C 0.03 1.19 10.91 83.00 0.91 2.10 16 11 C -0.15 -6.72 4.84 -18.63 -0.09 -6.81 16 12 C 0.12 6.28 0.69 -53.67 -0.04 6.24 16 13 C -0.11 -5.66 8.17 71.98 0.59 -5.07 16 14 C -0.11 -5.67 8.17 71.98 0.59 -5.08 16 15 C -0.52 -27.61 7.79 25.60 0.20 -27.41 16 16 H 0.06 3.05 5.65 -2.91 -0.02 3.03 16 17 C 0.02 1.03 5.15 84.65 0.44 1.47 16 18 N -0.91 -50.95 9.35 21.45 0.20 -50.75 16 19 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 25 H 0.08 1.13 8.08 -2.38 -0.02 1.11 16 26 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.11 4.14 6.48 -2.91 -0.02 4.12 16 28 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.17 6.50 6.33 -2.91 -0.02 6.48 16 30 H 0.02 0.96 6.81 -2.39 -0.02 0.94 16 31 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 32 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 35 H 0.02 0.95 6.81 -2.38 -0.02 0.94 16 36 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -62.58 287.89 5.33 -57.25 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.26 Total: 19.88 kcal Atomic # 6 Polarization: -55.32 SS G_CDS: 3.98 Total: -51.35 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -0.94 Total: -70.66 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -62.58 5.33 -57.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527401682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.139 kcal (2) G-P(sol) polarization free energy of solvation -62.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds