Wall clock time and date at job start Mon Mar 30 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39127 * 126.24511 * 2 1 4 4 C 1.39920 * 125.69544 * 0.03292 * 3 2 1 5 5 H 1.08005 * 119.99828 * 319.04034 * 4 3 2 6 6 C 1.40184 * 120.00289 * 139.31478 * 4 3 2 7 7 N 1.30754 * 119.99591 * 341.99362 * 6 4 3 8 8 Si 1.86793 * 120.00422 * 161.99393 * 6 4 3 9 9 H 1.48507 * 109.46820 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47603 * 119.99739 * 8 6 4 11 11 H 1.48505 * 109.47271 * 240.00209 * 8 6 4 12 12 N 1.38317 * 108.61410 * 180.29762 * 3 2 1 13 13 C 1.46496 * 125.60536 * 179.71221 * 12 3 2 14 14 C 1.38050 * 108.79517 * 359.56494 * 12 3 2 15 15 C 1.40928 * 126.25511 * 180.02562 * 2 1 3 16 16 C 1.40454 * 133.09749 * 359.97438 * 15 2 1 17 17 C 1.50697 * 120.09758 * 359.97438 * 16 15 2 18 18 C 1.36464 * 119.80373 * 179.97438 * 16 15 2 19 19 C 1.38899 * 120.59394 * 0.02562 * 18 16 15 20 20 C 1.38000 * 120.70105 * 359.96189 * 19 18 16 21 21 C 1.50689 * 120.05659 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.46967 * 95.40787 * 1 2 3 23 23 H 1.09001 * 109.46786 * 215.40290 * 1 2 3 24 24 H 1.08998 * 109.47597 * 335.40157 * 1 2 3 25 25 H 0.97006 * 119.99677 * 185.06800 * 7 6 4 26 26 H 1.08996 * 109.46946 * 92.43439 * 13 12 3 27 27 H 1.09000 * 109.47596 * 212.44020 * 13 12 3 28 28 H 1.09001 * 109.47093 * 332.44033 * 13 12 3 29 29 H 1.08997 * 109.47351 * 83.37300 * 17 16 15 30 30 H 1.09003 * 109.47412 * 203.37636 * 17 16 15 31 31 H 1.09004 * 109.46956 * 323.37523 * 17 16 15 32 32 H 1.08005 * 119.70617 * 179.97438 * 18 16 15 33 33 H 1.08005 * 119.64997 * 179.97438 * 19 18 16 34 34 H 1.09007 * 109.47088 * 89.99689 * 21 20 19 35 35 H 1.09001 * 109.47491 * 209.99967 * 21 20 19 36 36 H 1.09003 * 109.47604 * 330.00027 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3296 1.1221 0.0000 4 6 1.8959 2.4523 0.0007 5 1 1.0566 2.7470 -0.6120 6 6 2.5541 3.4039 0.7921 7 7 3.3218 3.0166 1.7771 8 14 2.3347 5.2251 0.4395 9 1 1.4228 5.3984 -0.7198 10 1 1.7535 5.8936 1.6313 11 1 3.6537 5.8311 0.1260 12 7 3.6478 0.7031 -0.0068 13 6 4.8214 1.5799 -0.0150 14 6 3.6759 -0.6771 -0.0012 15 6 2.3405 -1.1364 -0.0005 16 6 2.0810 -2.5168 -0.0007 17 6 0.6600 -3.0186 0.0003 18 6 3.1194 -3.4022 -0.0017 19 6 4.4331 -2.9510 -0.0021 20 6 4.7140 -1.5999 -0.0022 21 6 6.1446 -1.1265 -0.0033 22 1 -0.3633 -0.0969 -1.0231 23 1 -0.3633 -0.8377 0.5954 24 1 -0.3634 0.9344 0.4277 25 1 3.7185 3.6738 2.3702 26 1 5.1444 1.7642 1.0095 27 1 5.6284 1.1017 -0.5701 28 1 4.5644 2.5264 -0.4907 29 1 0.2771 -3.0275 -1.0201 30 1 0.6318 -4.0292 0.4078 31 1 0.0433 -2.3620 0.6141 32 1 2.9180 -4.4633 -0.0014 33 1 5.2433 -3.6652 -0.0026 34 1 6.4888 -1.0123 -1.0312 35 1 6.2104 -0.1674 0.5106 36 1 6.7696 -1.8572 0.5101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527403426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:26 Heat of formation + Delta-G solvation = 33.284180 kcal Electronic energy + Delta-G solvation = -17720.350630 eV Core-core repulsion = 15168.851461 eV Total energy + Delta-G solvation = -2551.499169 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.04447 -36.37656 -33.86980 -33.37459 -30.89359 -29.19560 -28.87693 -27.14154 -25.05381 -24.50037 -22.96273 -20.54454 -20.12159 -17.60241 -16.98195 -15.44488 -15.06538 -14.66865 -14.18340 -14.02510 -13.44541 -12.90466 -12.76342 -12.58640 -12.41363 -12.25653 -11.91068 -11.82299 -11.52109 -11.30818 -11.17432 -11.08114 -10.99994 -10.80916 -10.57183 -10.24796 -9.91696 -9.73644 -9.49015 -9.05793 -8.03211 -7.00153 -6.78969 -6.16232 -4.47198 2.23592 2.80991 2.89606 3.00049 3.05768 3.81844 3.94859 4.29652 4.86082 5.03935 5.65617 5.72554 5.85661 5.90179 6.01789 6.10022 6.14165 6.25674 6.32161 6.36890 6.43285 6.48381 6.57537 6.66180 6.74194 6.85458 6.93181 7.03461 7.05712 7.11625 7.35010 7.42686 7.60113 7.71446 7.93845 8.05096 8.11202 8.45289 8.63116 8.88788 9.09195 10.08138 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.009010 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.219719 B = 3106.953288 C = 4010.152785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.324 4.324 3 C 0.308 3.692 4 C -0.472 4.472 5 H 0.096 0.904 6 C 0.079 3.921 7 N -0.805 5.805 8 Si 0.907 3.093 9 H -0.259 1.259 10 H -0.273 1.273 11 H -0.273 1.273 12 N -0.477 5.477 13 C 0.106 3.894 14 C 0.052 3.948 15 C -0.034 4.034 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.142 4.142 19 C -0.166 4.166 20 C -0.090 4.090 21 C -0.110 4.110 22 H 0.028 0.972 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.282 0.718 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 -2.785 -2.019 3.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.329 4.329 3 C 0.200 3.800 4 C -0.506 4.506 5 H 0.114 0.886 6 C -0.139 4.139 7 N -0.433 5.433 8 Si 0.731 3.269 9 H -0.183 1.183 10 H -0.199 1.199 11 H -0.198 1.198 12 N -0.161 5.161 13 C -0.037 4.037 14 C -0.052 4.052 15 C -0.039 4.039 16 C -0.101 4.101 17 C -0.160 4.160 18 C -0.161 4.161 19 C -0.186 4.186 20 C -0.093 4.093 21 C -0.167 4.167 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.191 -2.500 -1.882 3.820 hybrid contribution 0.202 0.917 0.084 0.943 sum 2.393 -1.583 -1.798 3.386 Atomic orbital electron populations 1.19770 0.91894 0.99922 0.98343 1.19248 0.93859 0.90211 1.29535 1.17763 0.79837 0.93139 0.89262 1.18703 1.15197 0.90709 1.26002 0.88618 1.25883 0.92811 1.01447 0.93761 1.69781 1.25305 1.36895 1.11274 0.86267 0.79161 0.81735 0.79706 1.18269 1.19875 1.19813 1.44416 1.06225 1.02692 1.62796 1.21747 0.86248 0.93804 1.01871 1.18049 0.94569 0.83360 1.09240 1.17815 0.92188 0.92113 1.01813 1.18929 0.94548 0.91616 1.04965 1.20747 0.94474 0.99620 1.01113 1.20079 0.92439 0.97438 1.06147 1.20153 0.95739 0.93200 1.09473 1.18641 0.92653 0.92292 1.05687 1.20831 0.93810 1.01208 1.00859 0.95361 0.93942 0.93298 0.90729 0.91600 0.93004 0.91441 0.92740 0.93438 0.91312 0.88308 0.88076 0.92625 0.91905 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.91 9.50 36.01 0.34 -0.57 16 2 C -0.32 -8.17 6.26 -103.27 -0.65 -8.81 16 3 C 0.31 8.06 6.02 -83.98 -0.51 7.55 16 4 C -0.47 -11.94 8.40 -38.22 -0.32 -12.26 16 5 H 0.10 2.36 7.91 -52.48 -0.42 1.94 16 6 C 0.08 1.86 4.08 -17.28 -0.07 1.79 16 7 N -0.81 -19.71 10.78 55.56 0.60 -19.11 16 8 Si 0.91 17.78 29.60 -169.99 -5.03 12.75 16 9 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 10 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 12 N -0.48 -11.81 3.18 -118.88 -0.38 -12.19 16 13 C 0.11 2.27 7.78 59.84 0.47 2.74 16 14 C 0.05 1.28 6.74 -83.69 -0.56 0.71 16 15 C -0.03 -0.84 5.98 -106.91 -0.64 -1.48 16 16 C -0.10 -2.16 5.89 -104.43 -0.62 -2.78 16 17 C -0.10 -1.85 9.40 36.00 0.34 -1.52 16 18 C -0.14 -2.83 9.59 -39.98 -0.38 -3.22 16 19 C -0.17 -3.32 9.68 -39.42 -0.38 -3.70 16 20 C -0.09 -1.93 5.89 -104.47 -0.62 -2.54 16 21 C -0.11 -1.94 8.78 36.00 0.32 -1.63 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.04 0.84 5.33 -51.93 -0.28 0.56 16 24 H 0.05 1.05 7.78 -51.93 -0.40 0.65 16 25 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 26 H 0.07 1.45 7.14 -51.93 -0.37 1.08 16 27 H 0.05 0.97 5.89 -51.93 -0.31 0.66 16 28 H 0.07 1.46 6.90 -51.93 -0.36 1.10 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.74 8.02 -51.93 -0.42 0.32 16 31 H 0.07 1.25 5.18 -51.93 -0.27 0.98 16 32 H 0.10 1.69 8.04 -52.48 -0.42 1.27 16 33 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.12 5.52 -51.93 -0.29 0.84 16 36 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 LS Contribution 285.47 15.07 4.30 4.30 Total: -1.00 -27.62 285.47 -8.56 -36.18 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.77 Total: 3.79 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -3.28 Total: -25.72 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.22 Total: -31.30 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.62 -8.56 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527403426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.464 kcal (2) G-P(sol) polarization free energy of solvation -27.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds