Wall clock time and date at job start Mon Mar 30 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39127 * 126.24511 * 2 1 4 4 C 1.39920 * 125.69544 * 0.03292 * 3 2 1 5 5 H 1.08005 * 119.99828 * 319.04034 * 4 3 2 6 6 C 1.40184 * 120.00289 * 139.31478 * 4 3 2 7 7 N 1.30754 * 119.99591 * 341.99362 * 6 4 3 8 8 Si 1.86793 * 120.00422 * 161.99393 * 6 4 3 9 9 H 1.48507 * 109.46820 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47603 * 119.99739 * 8 6 4 11 11 H 1.48505 * 109.47271 * 240.00209 * 8 6 4 12 12 N 1.38317 * 108.61410 * 180.29762 * 3 2 1 13 13 C 1.46496 * 125.60536 * 179.71221 * 12 3 2 14 14 C 1.38050 * 108.79517 * 359.56494 * 12 3 2 15 15 C 1.40928 * 126.25511 * 180.02562 * 2 1 3 16 16 C 1.40454 * 133.09749 * 359.97438 * 15 2 1 17 17 C 1.50697 * 120.09758 * 359.97438 * 16 15 2 18 18 C 1.36464 * 119.80373 * 179.97438 * 16 15 2 19 19 C 1.38899 * 120.59394 * 0.02562 * 18 16 15 20 20 C 1.38000 * 120.70105 * 359.96189 * 19 18 16 21 21 C 1.50689 * 120.05659 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.46967 * 95.40787 * 1 2 3 23 23 H 1.09001 * 109.46786 * 215.40290 * 1 2 3 24 24 H 1.08998 * 109.47597 * 335.40157 * 1 2 3 25 25 H 0.97006 * 119.99677 * 185.06800 * 7 6 4 26 26 H 1.08996 * 109.46946 * 92.43439 * 13 12 3 27 27 H 1.09000 * 109.47596 * 212.44020 * 13 12 3 28 28 H 1.09001 * 109.47093 * 332.44033 * 13 12 3 29 29 H 1.08997 * 109.47351 * 83.37300 * 17 16 15 30 30 H 1.09003 * 109.47412 * 203.37636 * 17 16 15 31 31 H 1.09004 * 109.46956 * 323.37523 * 17 16 15 32 32 H 1.08005 * 119.70617 * 179.97438 * 18 16 15 33 33 H 1.08005 * 119.64997 * 179.97438 * 19 18 16 34 34 H 1.09007 * 109.47088 * 89.99689 * 21 20 19 35 35 H 1.09001 * 109.47491 * 209.99967 * 21 20 19 36 36 H 1.09003 * 109.47604 * 330.00027 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3296 1.1221 0.0000 4 6 1.8959 2.4523 0.0007 5 1 1.0566 2.7470 -0.6120 6 6 2.5541 3.4039 0.7921 7 7 3.3218 3.0166 1.7771 8 14 2.3347 5.2251 0.4395 9 1 1.4228 5.3984 -0.7198 10 1 1.7535 5.8936 1.6313 11 1 3.6537 5.8311 0.1260 12 7 3.6478 0.7031 -0.0068 13 6 4.8214 1.5799 -0.0150 14 6 3.6759 -0.6771 -0.0012 15 6 2.3405 -1.1364 -0.0005 16 6 2.0810 -2.5168 -0.0007 17 6 0.6600 -3.0186 0.0003 18 6 3.1194 -3.4022 -0.0017 19 6 4.4331 -2.9510 -0.0021 20 6 4.7140 -1.5999 -0.0022 21 6 6.1446 -1.1265 -0.0033 22 1 -0.3633 -0.0969 -1.0231 23 1 -0.3633 -0.8377 0.5954 24 1 -0.3634 0.9344 0.4277 25 1 3.7185 3.6738 2.3702 26 1 5.1444 1.7642 1.0095 27 1 5.6284 1.1017 -0.5701 28 1 4.5644 2.5264 -0.4907 29 1 0.2771 -3.0275 -1.0201 30 1 0.6318 -4.0292 0.4078 31 1 0.0433 -2.3620 0.6141 32 1 2.9180 -4.4633 -0.0014 33 1 5.2433 -3.6652 -0.0026 34 1 6.4888 -1.0123 -1.0312 35 1 6.2104 -0.1674 0.5106 36 1 6.7696 -1.8572 0.5101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527403426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:25 Heat of formation + Delta-G solvation = 20.427692 kcal Electronic energy + Delta-G solvation = -17720.908129 eV Core-core repulsion = 15168.851461 eV Total energy + Delta-G solvation = -2552.056668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.75806 -38.03857 -35.49639 -35.15759 -32.56119 -30.79130 -30.57203 -28.82922 -26.76422 -26.11490 -24.59227 -22.26951 -21.79990 -19.31948 -18.78873 -17.15935 -16.77523 -16.31473 -15.89527 -15.59163 -15.04998 -14.47526 -14.35020 -14.10098 -14.02263 -13.81541 -13.54042 -13.40904 -13.17163 -12.97840 -12.78390 -12.73209 -12.63668 -12.45144 -12.10680 -11.86798 -11.54646 -11.37093 -11.14304 -10.80777 -9.71911 -8.78124 -8.55099 -7.90998 -6.33290 0.57317 1.14865 1.32103 1.38721 1.52287 2.12959 2.22405 2.56142 3.08401 3.31197 4.13102 4.19321 4.26042 4.42396 4.54004 4.55545 4.65494 4.73249 4.80757 4.85991 4.90718 4.96823 4.98675 5.02098 5.10311 5.16352 5.24367 5.31085 5.42301 5.49411 5.66300 5.76973 5.89497 6.01833 6.16099 6.31781 6.44148 6.62707 6.87606 7.07393 7.29515 8.33013 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.009010 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.219719 B = 3106.953288 C = 4010.152785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 C -0.351 4.351 3 C 0.270 3.730 4 C -0.501 4.501 5 H 0.088 0.912 6 C 0.047 3.953 7 N -0.835 5.835 8 Si 0.977 3.023 9 H -0.260 1.260 10 H -0.269 1.269 11 H -0.263 1.263 12 N -0.485 5.485 13 C 0.113 3.887 14 C 0.020 3.980 15 C -0.072 4.072 16 C -0.112 4.112 17 C -0.099 4.099 18 C -0.145 4.145 19 C -0.159 4.159 20 C -0.107 4.107 21 C -0.106 4.106 22 H 0.037 0.963 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.288 0.712 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 -4.115 -2.271 5.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.355 4.355 3 C 0.161 3.839 4 C -0.535 4.535 5 H 0.106 0.894 6 C -0.168 4.168 7 N -0.463 5.463 8 Si 0.798 3.202 9 H -0.184 1.184 10 H -0.194 1.194 11 H -0.188 1.188 12 N -0.170 5.170 13 C -0.029 4.029 14 C -0.084 4.084 15 C -0.077 4.077 16 C -0.113 4.113 17 C -0.156 4.156 18 C -0.164 4.164 19 C -0.178 4.178 20 C -0.110 4.110 21 C -0.163 4.163 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.037 -3.846 -2.135 5.345 hybrid contribution -0.017 1.107 0.160 1.119 sum 3.020 -2.739 -1.975 4.530 Atomic orbital electron populations 1.19738 0.90363 0.99994 0.99066 1.19782 0.95359 0.90724 1.29655 1.18144 0.80915 0.93898 0.90929 1.18815 1.16117 0.91437 1.27149 0.89369 1.26579 0.92092 1.05283 0.92874 1.69833 1.26037 1.38461 1.11956 0.85230 0.79334 0.76290 0.79367 1.18354 1.19382 1.18764 1.44548 1.06357 1.03317 1.62766 1.21727 0.86215 0.93477 1.01492 1.18595 0.95767 0.83607 1.10420 1.18235 0.92498 0.93474 1.03485 1.19417 0.96966 0.90755 1.04118 1.20754 0.92243 1.00829 1.01744 1.20546 0.92114 0.99031 1.04709 1.20676 0.96981 0.93219 1.06919 1.19156 0.93893 0.92640 1.05313 1.20833 0.91974 1.01409 1.02048 0.94448 0.92409 0.94308 0.90106 0.92617 0.90448 0.92317 0.91851 0.90578 0.92083 0.84801 0.84520 0.91128 0.92831 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.54 9.50 71.24 0.68 -0.86 16 2 C -0.35 -18.25 6.26 -18.99 -0.12 -18.36 16 3 C 0.27 14.68 6.02 38.74 0.23 14.92 16 4 C -0.50 -26.43 8.40 23.15 0.19 -26.24 16 5 H 0.09 4.58 7.91 -2.91 -0.02 4.55 16 6 C 0.05 2.26 4.08 85.33 0.35 2.61 16 7 N -0.83 -41.93 10.78 21.87 0.24 -41.70 16 8 Si 0.98 37.00 29.60 68.60 2.03 39.03 16 9 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 10 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 11 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 12 N -0.49 -24.71 3.18 -530.01 -1.68 -26.39 16 13 C 0.11 4.95 7.78 127.77 0.99 5.95 16 14 C 0.02 1.00 6.74 39.06 0.26 1.27 16 15 C -0.07 -3.58 5.98 -21.35 -0.13 -3.71 16 16 C -0.11 -4.69 5.89 -19.74 -0.12 -4.81 16 17 C -0.10 -3.37 9.40 71.23 0.67 -2.70 16 18 C -0.14 -5.35 9.59 22.01 0.21 -5.14 16 19 C -0.16 -5.83 9.68 22.37 0.22 -5.62 16 20 C -0.11 -4.42 5.89 -19.77 -0.12 -4.54 16 21 C -0.11 -3.49 8.78 71.23 0.63 -2.86 16 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.06 2.31 5.33 -2.39 -0.01 2.30 16 24 H 0.04 1.73 7.78 -2.39 -0.02 1.71 16 25 H 0.29 13.15 8.30 -92.70 -0.77 12.38 16 26 H 0.06 2.53 7.14 -2.39 -0.02 2.51 16 27 H 0.08 2.89 5.89 -2.39 -0.01 2.88 16 28 H 0.06 2.61 6.90 -2.39 -0.02 2.60 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.08 2.11 8.02 -2.39 -0.02 2.09 16 31 H 0.06 2.15 5.18 -2.38 -0.01 2.14 16 32 H 0.13 3.95 8.04 -2.91 -0.02 3.93 16 33 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.05 1.85 5.52 -2.39 -0.01 1.83 16 36 H 0.08 2.23 8.09 -2.39 -0.02 2.21 16 Total: -1.00 -61.11 285.47 5.62 -55.49 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 1.08 Total: 23.66 kcal Atomic # 6 Polarization: -54.05 SS G_CDS: 3.95 Total: -50.10 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -1.45 Total: -68.09 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -61.11 5.62 -55.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527403426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.918 kcal (2) G-P(sol) polarization free energy of solvation -61.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds