Wall clock time and date at job start Mon Mar 30 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39905 * 113.28631 * 2 1 4 4 C 1.53495 * 114.20816 * 226.93199 * 2 1 3 5 5 N 1.47069 * 87.98587 * 220.34876 * 4 2 1 6 6 C 1.34784 * 136.05474 * 207.08488 * 5 4 2 7 7 O 1.21274 * 119.99897 * 359.72586 * 6 5 4 8 8 C 1.50695 * 119.99635 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47542 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47469 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47257 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00042 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00282 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00039 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46867 * 90.00143 * 16 14 12 18 18 H 1.48499 * 109.47135 * 209.99944 * 16 14 12 19 19 H 1.48501 * 109.47216 * 330.00286 * 16 14 12 20 20 C 1.47068 * 87.88651 * 27.34115 * 5 4 2 21 21 H 1.08993 * 109.46981 * 193.06801 * 1 2 3 22 22 H 1.09002 * 109.46743 * 313.06729 * 1 2 3 23 23 H 1.08991 * 109.46711 * 73.06438 * 1 2 3 24 24 H 1.08994 * 113.47293 * 105.56713 * 4 2 1 25 25 H 1.08999 * 113.52128 * 335.13333 * 4 2 1 26 26 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 27 27 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 28 28 H 1.08997 * 109.47244 * 300.00535 * 9 8 6 29 29 H 1.09002 * 109.46787 * 59.99910 * 9 8 6 30 30 H 1.08997 * 109.47365 * 300.00556 * 10 9 8 31 31 H 1.09004 * 109.46747 * 59.99765 * 10 9 8 32 32 H 1.09005 * 109.47124 * 300.00323 * 11 10 9 33 33 H 1.09004 * 109.47330 * 60.00120 * 11 10 9 34 34 H 0.96990 * 120.00017 * 179.97438 * 15 14 12 35 35 H 1.08999 * 113.46642 * 87.43975 * 20 5 4 36 36 H 1.09001 * 113.46436 * 217.87945 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 2.0831 1.2851 0.0000 4 6 2.1594 -0.9560 -1.0227 5 7 3.1599 -1.3053 -0.0029 6 6 4.4331 -1.7475 -0.0040 7 8 5.0041 -1.9491 -1.0547 8 6 5.1452 -1.9966 1.3006 9 6 6.5659 -2.4902 1.0199 10 6 7.2892 -2.7426 2.3443 11 6 8.7101 -3.2356 2.0636 12 6 9.4223 -3.4847 3.3681 13 1 8.9125 -3.3086 4.3039 14 6 10.7249 -3.9365 3.3671 15 7 11.3463 -4.1544 4.5056 16 14 11.6068 -4.2405 1.7487 17 1 12.2992 -2.9982 1.3214 18 1 12.6034 -5.3272 1.9245 19 1 10.6188 -4.6375 0.7135 20 6 2.1575 -0.9661 1.0184 21 1 -0.3633 -1.0010 0.2323 22 1 -0.3633 0.7018 0.7508 23 1 -0.3632 0.2993 -0.9830 24 1 2.5821 -0.4477 -1.8893 25 1 1.5108 -1.7878 -1.2972 26 1 5.1885 -1.0703 1.8736 27 1 4.6047 -2.7518 1.8712 28 1 6.5222 -3.4165 0.4471 29 1 7.1067 -1.7353 0.4491 30 1 7.3329 -1.8161 2.9167 31 1 6.7485 -3.4973 2.9154 32 1 8.6667 -4.1621 1.4910 33 1 9.2506 -2.4805 1.4926 34 1 12.2625 -4.4726 4.5048 35 1 1.5077 -1.8004 1.2827 36 1 2.5786 -0.4663 1.8907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588725343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:59 Heat of formation + Delta-G solvation = -67.717645 kcal Electronic energy + Delta-G solvation = -17032.805266 eV Core-core repulsion = 14046.157104 eV Total energy + Delta-G solvation = -2986.648161 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.11451 -40.32362 -38.05557 -35.01913 -32.60970 -31.89325 -30.18661 -27.62356 -26.71194 -25.32771 -22.05142 -20.92294 -20.02421 -19.22039 -17.18997 -16.63065 -16.56680 -16.39538 -15.80495 -15.36681 -15.06538 -14.40748 -14.15803 -13.65898 -13.47265 -12.99757 -12.80778 -12.66607 -12.47452 -12.31837 -12.14275 -11.75284 -11.66884 -11.11129 -10.79594 -10.71790 -10.53499 -9.98996 -9.81811 -9.63863 -9.43199 -9.11180 -9.06180 -8.48280 -5.99585 -3.97055 2.45521 2.60523 3.36493 3.38109 3.43308 3.49563 3.67247 4.17335 4.30917 4.49615 4.51199 4.86552 4.94304 5.02182 5.06682 5.17722 5.21481 5.29082 5.35451 5.41955 5.49761 5.63652 5.78145 6.02704 6.15345 6.41132 6.68291 6.81746 6.99810 7.38701 7.42286 7.51856 7.85717 8.06254 8.59351 9.05340 9.63834 11.13962 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.055093 B = 0.003582 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.114011 B = 7814.010463 C = 8065.114547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.075 3.925 3 F -0.179 7.179 4 C 0.084 3.916 5 N -0.653 5.653 6 C 0.546 3.454 7 O -0.530 6.530 8 C -0.131 4.131 9 C -0.107 4.107 10 C -0.102 4.102 11 C -0.016 4.016 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.906 5.906 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.084 3.916 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.016 0.984 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.105 0.895 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.188 7.554 -8.457 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 F -0.159 7.159 4 C -0.039 4.039 5 N -0.391 5.391 6 C 0.337 3.663 7 O -0.406 6.406 8 C -0.170 4.170 9 C -0.145 4.145 10 C -0.140 4.140 11 C -0.053 4.053 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.040 4.040 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.106 0.894 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.409 7.321 -8.956 27.011 hybrid contribution 0.603 -0.087 -0.695 0.925 sum -23.806 7.233 -9.651 26.687 Atomic orbital electron populations 1.22058 0.90982 1.04296 1.04230 1.22081 0.93971 0.79474 0.98883 1.92903 1.87074 1.39016 1.96955 1.23576 0.89131 0.96863 0.94377 1.49661 1.10776 1.68489 1.10173 1.20757 0.78583 0.74490 0.92450 1.90717 1.64910 1.50708 1.34218 1.21734 0.98096 1.03470 0.93738 1.21515 0.91868 1.01623 0.99499 1.21471 0.97499 1.00554 0.94431 1.19578 0.92274 0.95891 0.97546 1.21184 0.97740 1.44129 0.92668 0.91099 1.25043 0.97443 0.94948 0.96178 1.69921 1.12356 1.46799 1.25502 0.86771 0.79621 0.78122 0.84768 1.20300 1.21453 1.18901 1.23736 0.89261 0.97008 0.94036 0.89852 0.90516 0.90614 0.89374 0.88077 0.88938 0.88953 0.91726 0.91708 0.92813 0.92808 0.96600 0.97021 0.92813 0.87707 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 9.67 37.16 0.36 -0.20 16 2 C 0.08 0.52 2.41 -89.97 -0.22 0.31 16 3 F -0.18 -1.85 17.33 2.25 0.04 -1.81 16 4 C 0.08 0.71 8.10 -8.50 -0.07 0.64 16 5 N -0.65 -7.30 3.69 -185.02 -0.68 -7.98 16 6 C 0.55 8.11 8.08 -10.98 -0.09 8.03 16 7 O -0.53 -10.08 16.76 5.56 0.09 -9.99 16 8 C -0.13 -1.79 5.53 -27.88 -0.15 -1.94 16 9 C -0.11 -1.87 4.50 -26.73 -0.12 -1.99 16 10 C -0.10 -2.05 5.15 -26.74 -0.14 -2.19 16 11 C -0.02 -0.39 4.04 -27.89 -0.11 -0.50 16 12 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 13 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.91 -28.64 13.96 55.43 0.77 -27.86 16 16 Si 0.88 22.59 27.47 -169.99 -4.67 17.93 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 19 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 20 C 0.08 0.58 7.92 -8.36 -0.07 0.51 16 21 H 0.08 0.15 7.89 -51.93 -0.41 -0.26 16 22 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 29 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 33 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.11 0.44 7.93 -51.93 -0.41 0.02 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -35.76 306.80 -6.68 -42.43 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -5.82 Total: -6.24 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.04 Total: -11.10 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.09 Total: -35.84 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.93 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.76 -6.68 -42.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588725343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.283 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds