Wall clock time and date at job start Mon Mar 30 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39905 * 113.28631 * 2 1 4 4 C 1.53495 * 114.20816 * 226.93199 * 2 1 3 5 5 N 1.47069 * 87.98587 * 220.34876 * 4 2 1 6 6 C 1.34784 * 136.05474 * 207.08488 * 5 4 2 7 7 O 1.21274 * 119.99897 * 359.72586 * 6 5 4 8 8 C 1.50695 * 119.99635 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47542 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47469 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47257 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00042 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00282 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00039 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46867 * 90.00143 * 16 14 12 18 18 H 1.48499 * 109.47135 * 209.99944 * 16 14 12 19 19 H 1.48501 * 109.47216 * 330.00286 * 16 14 12 20 20 C 1.47068 * 87.88651 * 27.34115 * 5 4 2 21 21 H 1.08993 * 109.46981 * 193.06801 * 1 2 3 22 22 H 1.09002 * 109.46743 * 313.06729 * 1 2 3 23 23 H 1.08991 * 109.46711 * 73.06438 * 1 2 3 24 24 H 1.08994 * 113.47293 * 105.56713 * 4 2 1 25 25 H 1.08999 * 113.52128 * 335.13333 * 4 2 1 26 26 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 27 27 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 28 28 H 1.08997 * 109.47244 * 300.00535 * 9 8 6 29 29 H 1.09002 * 109.46787 * 59.99910 * 9 8 6 30 30 H 1.08997 * 109.47365 * 300.00556 * 10 9 8 31 31 H 1.09004 * 109.46747 * 59.99765 * 10 9 8 32 32 H 1.09005 * 109.47124 * 300.00323 * 11 10 9 33 33 H 1.09004 * 109.47330 * 60.00120 * 11 10 9 34 34 H 0.96990 * 120.00017 * 179.97438 * 15 14 12 35 35 H 1.08999 * 113.46642 * 87.43975 * 20 5 4 36 36 H 1.09001 * 113.46436 * 217.87945 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 2.0831 1.2851 0.0000 4 6 2.1594 -0.9560 -1.0227 5 7 3.1599 -1.3053 -0.0029 6 6 4.4331 -1.7475 -0.0040 7 8 5.0041 -1.9491 -1.0547 8 6 5.1452 -1.9966 1.3006 9 6 6.5659 -2.4902 1.0199 10 6 7.2892 -2.7426 2.3443 11 6 8.7101 -3.2356 2.0636 12 6 9.4223 -3.4847 3.3681 13 1 8.9125 -3.3086 4.3039 14 6 10.7249 -3.9365 3.3671 15 7 11.3463 -4.1544 4.5056 16 14 11.6068 -4.2405 1.7487 17 1 12.2992 -2.9982 1.3214 18 1 12.6034 -5.3272 1.9245 19 1 10.6188 -4.6375 0.7135 20 6 2.1575 -0.9661 1.0184 21 1 -0.3633 -1.0010 0.2323 22 1 -0.3633 0.7018 0.7508 23 1 -0.3632 0.2993 -0.9830 24 1 2.5821 -0.4477 -1.8893 25 1 1.5108 -1.7878 -1.2972 26 1 5.1885 -1.0703 1.8736 27 1 4.6047 -2.7518 1.8712 28 1 6.5222 -3.4165 0.4471 29 1 7.1067 -1.7353 0.4491 30 1 7.3329 -1.8161 2.9167 31 1 6.7485 -3.4973 2.9154 32 1 8.6667 -4.1621 1.4910 33 1 9.2506 -2.4805 1.4926 34 1 12.2625 -4.4726 4.5048 35 1 1.5077 -1.8004 1.2827 36 1 2.5786 -0.4663 1.8907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588725343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:58 Heat of formation + Delta-G solvation = -91.563135 kcal Electronic energy + Delta-G solvation = -17033.839284 eV Core-core repulsion = 14046.157104 eV Total energy + Delta-G solvation = -2987.682179 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.78915 -41.20633 -39.02406 -36.68582 -34.62952 -32.73521 -31.70140 -28.69335 -27.32606 -26.76820 -23.64182 -21.82295 -21.59081 -20.10209 -18.87714 -18.06243 -17.37146 -17.22313 -16.70232 -16.34184 -16.28832 -15.88490 -15.53552 -14.82087 -14.52022 -14.36506 -13.78821 -13.74886 -13.58294 -13.37025 -13.09321 -13.03762 -12.87889 -12.43711 -12.29433 -12.13397 -11.77250 -11.56204 -11.39119 -11.32885 -11.28716 -10.84214 -10.77274 -9.91264 -8.30942 -6.34113 1.34042 1.35197 1.48272 1.49362 1.69298 2.34918 2.83498 3.04415 3.08939 3.48790 3.83653 3.86667 3.95254 4.08538 4.29197 4.43156 4.46115 4.52727 4.58296 4.67581 4.72782 4.78225 4.84580 4.87926 5.08748 5.14512 5.18352 5.22720 5.28902 5.56280 5.62462 5.66711 6.28060 6.52581 6.73693 7.01365 7.30808 8.85727 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.055093 B = 0.003582 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.114011 B = 7814.010463 C = 8065.114547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 F -0.204 7.204 4 C 0.076 3.924 5 N -0.661 5.661 6 C 0.539 3.461 7 O -0.587 6.587 8 C -0.122 4.122 9 C -0.098 4.098 10 C -0.092 4.092 11 C -0.017 4.017 12 C -0.531 4.531 13 H 0.038 0.962 14 C 0.004 3.996 15 N -0.951 5.951 16 Si 0.947 3.053 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.253 1.253 20 C 0.084 3.916 21 H 0.109 0.891 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.133 0.867 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.267 0.733 35 H 0.144 0.856 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.419 7.502 -9.135 29.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.057 3.943 3 F -0.184 7.184 4 C -0.047 4.047 5 N -0.397 5.397 6 C 0.331 3.669 7 O -0.468 6.468 8 C -0.161 4.161 9 C -0.136 4.136 10 C -0.130 4.130 11 C -0.054 4.054 12 C -0.569 4.569 13 H 0.056 0.944 14 C -0.192 4.192 15 N -0.591 5.591 16 Si 0.771 3.229 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.176 1.176 20 C -0.038 4.038 21 H 0.127 0.873 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.151 0.849 26 H 0.127 0.873 27 H 0.136 0.864 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.162 0.838 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -26.711 7.296 -9.611 29.310 hybrid contribution 1.206 -0.031 -0.406 1.273 sum -25.505 7.266 -10.017 28.349 Atomic orbital electron populations 1.22077 0.87763 1.06103 1.04797 1.22323 0.95980 0.78012 0.98001 1.92859 1.87725 1.40824 1.97002 1.23915 0.88744 0.98320 0.93717 1.49746 1.10463 1.66449 1.13028 1.20824 0.79789 0.74420 0.91863 1.90685 1.66613 1.53641 1.35811 1.21611 0.95774 1.04901 0.93862 1.21301 0.94069 1.00888 0.97332 1.21326 0.95040 1.00636 0.96004 1.19573 0.94781 0.95981 0.95091 1.21536 0.98170 1.43783 0.93397 0.94393 1.25986 0.98453 0.94754 1.00036 1.70056 1.13027 1.48053 1.28008 0.85696 0.78569 0.78502 0.80132 1.19288 1.20593 1.17632 1.24123 0.88246 0.98155 0.93263 0.87267 0.90032 0.90171 0.91469 0.84894 0.87272 0.86366 0.92748 0.93177 0.92516 0.92167 0.96678 0.96999 0.92462 0.83840 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.67 71.98 0.70 0.18 16 2 C 0.08 0.86 2.41 -10.37 -0.02 0.84 16 3 F -0.20 -3.98 17.33 44.97 0.78 -3.20 16 4 C 0.08 1.13 8.10 83.18 0.67 1.80 16 5 N -0.66 -13.51 3.69 -857.65 -3.16 -16.67 16 6 C 0.54 15.53 8.08 87.65 0.71 16.24 16 7 O -0.59 -22.61 16.76 -3.01 -0.05 -22.66 16 8 C -0.12 -3.12 5.53 29.85 0.16 -2.95 16 9 C -0.10 -3.35 4.50 30.59 0.14 -3.21 16 10 C -0.09 -3.65 5.15 30.59 0.16 -3.49 16 11 C -0.02 -0.83 4.04 29.85 0.12 -0.71 16 12 C -0.53 -31.65 9.66 25.60 0.25 -31.40 16 13 H 0.04 2.44 7.99 -2.91 -0.02 2.41 16 14 C 0.00 0.27 5.47 84.65 0.46 0.73 16 15 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 16 Si 0.95 46.48 27.47 68.60 1.88 48.37 16 17 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 19 H -0.25 -11.81 6.54 99.48 0.65 -11.16 16 20 C 0.08 0.87 7.92 83.27 0.66 1.53 16 21 H 0.11 -0.16 7.89 -2.39 -0.02 -0.18 16 22 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 23 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.13 1.14 8.10 -2.39 -0.02 1.12 16 26 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 27 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 1.96 8.10 -2.39 -0.02 1.94 16 29 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.01 0.74 7.20 -2.38 -0.02 0.72 16 33 H 0.01 0.58 7.57 -2.38 -0.02 0.56 16 34 H 0.27 15.91 8.31 -92.72 -0.77 15.14 16 35 H 0.14 0.45 7.93 -2.39 -0.02 0.43 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -79.90 306.80 4.74 -75.16 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: 0.98 Total: 0.14 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 4.00 Total: -20.45 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -2.86 Total: -77.36 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.88 Total: 48.37 kcal Total: -79.90 4.74 -75.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588725343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.402 kcal (2) G-P(sol) polarization free energy of solvation -79.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds