Wall clock time and date at job start Mon Mar 30 2020 05:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00124 * 2 1 4 4 H 1.48498 * 109.47263 * 239.99895 * 3 2 1 5 5 H 1.48502 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47130 * 119.99783 * 3 2 1 7 7 C 1.37875 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47015 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46946 * 179.97438 * 11 10 9 13 13 O 1.21276 * 120.00166 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99585 * 179.97438 * 12 11 10 15 15 C 1.46926 * 120.62730 * 180.02562 * 14 12 11 16 16 C 1.53191 * 108.89109 * 126.46248 * 15 14 12 17 17 C 1.53044 * 109.31440 * 54.56430 * 16 15 14 18 18 C 1.53040 * 109.53662 * 298.63203 * 17 16 15 19 19 H 1.08994 * 109.49843 * 301.38341 * 18 17 16 20 20 F 1.39896 * 109.49880 * 181.31368 * 18 17 16 21 21 C 1.46957 * 120.65462 * 359.81587 * 14 12 11 22 22 H 0.96998 * 119.99644 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46970 * 59.99767 * 9 7 2 24 24 H 1.08999 * 109.46766 * 300.00169 * 9 7 2 25 25 H 1.08997 * 109.47213 * 59.99675 * 10 9 7 26 26 H 1.09002 * 109.46850 * 299.99682 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99514 * 11 10 9 28 28 H 1.08999 * 109.46626 * 299.99890 * 11 10 9 29 29 H 1.09002 * 109.58861 * 6.60251 * 15 14 12 30 30 H 1.08996 * 109.58519 * 246.32142 * 15 14 12 31 31 H 1.09003 * 109.49294 * 174.51508 * 16 15 14 32 32 H 1.08997 * 109.50161 * 294.61021 * 16 15 14 33 33 H 1.08994 * 109.45986 * 58.65006 * 17 16 15 34 34 H 1.09001 * 109.45959 * 178.62334 * 17 16 15 35 35 H 1.09001 * 109.46843 * 113.75468 * 21 14 12 36 36 H 1.08997 * 109.71602 * 353.46961 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0033 12 6 2.4595 -6.1326 -0.0037 13 8 3.6519 -5.9110 -0.0031 14 7 2.0102 -7.4032 -0.0047 15 6 2.9526 -8.5304 -0.0045 16 6 2.6090 -9.4641 1.1604 17 6 1.1380 -9.8749 1.0629 18 6 0.2516 -8.6313 1.1629 19 1 0.4448 -8.1219 2.1069 20 9 -1.0936 -9.0108 1.1038 21 6 0.5685 -7.6882 -0.0014 22 1 -0.4849 0.8401 -0.0004 23 1 0.6246 -2.5563 -0.8920 24 1 0.6240 -2.5574 0.8880 25 1 2.8712 -3.6047 0.8890 26 1 2.8725 -3.6039 -0.8910 27 1 0.8545 -5.0442 -0.8940 28 1 0.8526 -5.0454 0.8860 29 1 3.9696 -8.1565 0.1146 30 1 2.8714 -9.0748 -0.9453 31 1 3.2388 -10.3524 1.1125 32 1 2.7804 -8.9465 2.1042 33 1 0.9619 -10.3704 0.1082 34 1 0.8972 -10.5587 1.8768 35 1 0.2899 -8.1631 -0.9421 36 1 0.0104 -6.7596 0.1184 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594055299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:01 Heat of formation + Delta-G solvation = -112.372678 kcal Electronic energy + Delta-G solvation = -17523.637654 eV Core-core repulsion = 14535.053105 eV Total energy + Delta-G solvation = -2988.584549 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.90671 -40.08072 -37.26506 -34.26462 -33.08889 -31.98112 -30.76725 -28.01170 -25.68962 -23.99757 -23.02332 -21.34693 -20.15668 -18.98366 -17.13909 -16.53582 -16.21663 -16.02384 -15.59818 -15.38674 -15.05269 -14.44438 -14.04950 -13.81418 -13.46807 -12.98735 -12.81874 -12.67230 -12.21160 -11.80275 -11.61804 -11.44509 -11.29498 -11.12007 -10.85559 -10.78516 -10.57729 -10.54576 -9.68831 -9.68005 -9.27321 -9.03184 -8.78277 -8.31177 -5.96937 -3.98513 2.77876 2.87472 3.37183 3.40647 3.44392 4.11882 4.20812 4.33242 4.49653 4.51440 4.67977 4.86406 5.01013 5.11202 5.24379 5.39022 5.39521 5.44714 5.50341 5.60307 5.65673 5.67550 5.74957 5.91236 6.20328 6.39279 6.70822 6.91573 7.14768 7.32973 7.70720 7.83481 8.03356 8.31006 8.47220 9.08225 9.65422 11.14539 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.039909 B = 0.004303 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.431823 B = 6505.105908 C = 7064.437159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.140 4.140 12 C 0.518 3.482 13 O -0.532 6.532 14 N -0.621 5.621 15 C 0.106 3.894 16 C -0.132 4.132 17 C -0.145 4.145 18 C 0.077 3.923 19 H 0.089 0.911 20 F -0.207 7.207 21 C 0.085 3.915 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.410 -20.976 1.427 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.308 3.692 13 O -0.407 6.407 14 N -0.357 5.357 15 C -0.017 4.017 16 C -0.170 4.170 17 C -0.183 4.183 18 C 0.039 3.961 19 H 0.107 0.893 20 F -0.188 7.188 21 C -0.039 4.039 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.888 -20.717 1.416 20.785 hybrid contribution 0.169 0.773 0.014 0.791 sum 1.057 -19.945 1.430 20.024 Atomic orbital electron populations 1.69952 1.06036 1.26661 1.51074 1.25013 0.94852 0.99228 0.95355 0.86650 0.79572 0.83069 0.78678 1.20233 1.21324 1.20231 1.21229 0.93144 0.91010 1.50346 0.92635 1.19130 0.93949 0.91435 0.97141 1.21465 0.98665 0.91466 1.01724 1.21906 0.98231 0.94122 1.03663 1.21314 0.90314 0.83244 0.74306 1.90671 1.17303 1.83981 1.48786 1.48130 1.05868 1.06225 1.75427 1.21602 0.95105 0.87096 0.97890 1.21878 0.95446 0.99992 0.99677 1.22128 0.95254 0.97063 1.03850 1.21919 0.76890 0.96427 1.00842 0.89271 1.92829 1.35473 1.92709 1.97816 1.22218 0.82216 1.01153 0.98357 0.93003 0.96584 0.96601 0.92670 0.92655 0.89237 0.89320 0.88539 0.91557 0.89946 0.91008 0.90513 0.90455 0.90232 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.06 4.44 -26.73 -0.12 -2.17 16 11 C -0.14 -2.31 4.05 -27.88 -0.11 -2.42 16 12 C 0.52 8.34 7.70 -10.98 -0.08 8.26 16 13 O -0.53 -10.51 15.39 5.56 0.09 -10.42 16 14 N -0.62 -7.53 2.98 -172.77 -0.51 -8.04 16 15 C 0.11 1.06 6.43 -3.71 -0.02 1.04 16 16 C -0.13 -1.00 6.08 -26.61 -0.16 -1.16 16 17 C -0.15 -1.07 5.62 -26.69 -0.15 -1.22 16 18 C 0.08 0.69 4.03 -26.63 -0.11 0.58 16 19 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 20 F -0.21 -2.22 17.09 2.25 0.04 -2.18 16 21 C 0.08 0.84 6.07 -3.71 -0.02 0.81 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.24 8.10 -51.93 -0.42 0.81 16 26 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 27 H 0.09 1.35 7.95 -51.93 -0.41 0.94 16 28 H 0.09 1.33 7.69 -51.93 -0.40 0.93 16 29 H 0.10 1.14 7.01 -51.93 -0.36 0.77 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.10 1.03 5.95 -51.93 -0.31 0.72 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -32.76 297.69 -7.19 -39.96 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -5.67 Total: -4.72 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.33 Total: -9.71 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.22 Total: -34.43 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.76 -7.19 -39.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594055299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.415 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds