Wall clock time and date at job start Mon Mar 30 2020 05:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00124 * 2 1 4 4 H 1.48498 * 109.47263 * 239.99895 * 3 2 1 5 5 H 1.48502 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47130 * 119.99783 * 3 2 1 7 7 C 1.37875 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47015 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46946 * 179.97438 * 11 10 9 13 13 O 1.21276 * 120.00166 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99585 * 179.97438 * 12 11 10 15 15 C 1.46926 * 120.62730 * 180.02562 * 14 12 11 16 16 C 1.53191 * 108.89109 * 126.46248 * 15 14 12 17 17 C 1.53044 * 109.31440 * 54.56430 * 16 15 14 18 18 C 1.53040 * 109.53662 * 298.63203 * 17 16 15 19 19 H 1.08994 * 109.49843 * 301.38341 * 18 17 16 20 20 F 1.39896 * 109.49880 * 181.31368 * 18 17 16 21 21 C 1.46957 * 120.65462 * 359.81587 * 14 12 11 22 22 H 0.96998 * 119.99644 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46970 * 59.99767 * 9 7 2 24 24 H 1.08999 * 109.46766 * 300.00169 * 9 7 2 25 25 H 1.08997 * 109.47213 * 59.99675 * 10 9 7 26 26 H 1.09002 * 109.46850 * 299.99682 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99514 * 11 10 9 28 28 H 1.08999 * 109.46626 * 299.99890 * 11 10 9 29 29 H 1.09002 * 109.58861 * 6.60251 * 15 14 12 30 30 H 1.08996 * 109.58519 * 246.32142 * 15 14 12 31 31 H 1.09003 * 109.49294 * 174.51508 * 16 15 14 32 32 H 1.08997 * 109.50161 * 294.61021 * 16 15 14 33 33 H 1.08994 * 109.45986 * 58.65006 * 17 16 15 34 34 H 1.09001 * 109.45959 * 178.62334 * 17 16 15 35 35 H 1.09001 * 109.46843 * 113.75468 * 21 14 12 36 36 H 1.08997 * 109.71602 * 353.46961 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0033 12 6 2.4595 -6.1326 -0.0037 13 8 3.6519 -5.9110 -0.0031 14 7 2.0102 -7.4032 -0.0047 15 6 2.9526 -8.5304 -0.0045 16 6 2.6090 -9.4641 1.1604 17 6 1.1380 -9.8749 1.0629 18 6 0.2516 -8.6313 1.1629 19 1 0.4448 -8.1219 2.1069 20 9 -1.0936 -9.0108 1.1038 21 6 0.5685 -7.6882 -0.0014 22 1 -0.4849 0.8401 -0.0004 23 1 0.6246 -2.5563 -0.8920 24 1 0.6240 -2.5574 0.8880 25 1 2.8712 -3.6047 0.8890 26 1 2.8725 -3.6039 -0.8910 27 1 0.8545 -5.0442 -0.8940 28 1 0.8526 -5.0454 0.8860 29 1 3.9696 -8.1565 0.1146 30 1 2.8714 -9.0748 -0.9453 31 1 3.2388 -10.3524 1.1125 32 1 2.7804 -8.9465 2.1042 33 1 0.9619 -10.3704 0.1082 34 1 0.8972 -10.5587 1.8768 35 1 0.2899 -8.1631 -0.9421 36 1 0.0104 -6.7596 0.1184 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594055299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:01 Heat of formation + Delta-G solvation = -132.064992 kcal Electronic energy + Delta-G solvation = -17524.491577 eV Core-core repulsion = 14535.053105 eV Total energy + Delta-G solvation = -2989.438472 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.68713 -41.21489 -38.29144 -36.15900 -34.30287 -33.65222 -31.62433 -29.75368 -26.85833 -25.51312 -24.01695 -22.54128 -21.61143 -20.08041 -18.56595 -18.13325 -17.26937 -17.08390 -16.73463 -16.46887 -16.20940 -16.03581 -15.21284 -15.02924 -14.45808 -14.15472 -14.04754 -13.89607 -13.61586 -13.38935 -13.11479 -12.63061 -12.50246 -12.42465 -12.31905 -12.05092 -11.87142 -11.57778 -11.56580 -11.44468 -11.23569 -10.73652 -10.53971 -9.77132 -8.19936 -6.30111 1.40005 1.42858 1.50968 1.53588 1.85861 2.41944 3.13114 3.38834 3.46395 3.53639 3.78885 3.87840 4.03905 4.13555 4.20893 4.28480 4.35080 4.53437 4.69903 4.72222 4.81521 4.85641 4.93249 4.98689 5.03822 5.07860 5.18023 5.28738 5.47888 5.53822 5.74254 5.85896 6.20695 6.29005 6.84935 7.09561 7.38585 8.91421 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.039909 B = 0.004303 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.431823 B = 6505.105908 C = 7064.437159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.052 0.948 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.132 4.132 12 C 0.519 3.481 13 O -0.577 6.577 14 N -0.610 5.610 15 C 0.099 3.901 16 C -0.123 4.123 17 C -0.140 4.140 18 C 0.076 3.924 19 H 0.088 0.912 20 F -0.216 7.216 21 C 0.079 3.921 22 H 0.265 0.735 23 H 0.001 0.999 24 H 0.001 0.999 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 -22.190 1.429 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.070 0.930 9 C -0.011 4.011 10 C -0.120 4.120 11 C -0.171 4.171 12 C 0.309 3.691 13 O -0.457 6.457 14 N -0.344 5.344 15 C -0.022 4.022 16 C -0.161 4.161 17 C -0.177 4.177 18 C 0.039 3.961 19 H 0.106 0.894 20 F -0.197 7.197 21 C -0.044 4.044 22 H 0.073 0.927 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.803 -21.982 1.421 22.043 hybrid contribution 0.137 1.094 0.005 1.102 sum 0.940 -20.888 1.426 20.958 Atomic orbital electron populations 1.70060 1.07518 1.27863 1.51485 1.25898 0.95809 1.03046 0.94633 0.85557 0.78390 0.78387 0.79064 1.19430 1.20366 1.19415 1.21660 0.93350 0.92780 1.50900 0.93018 1.19018 0.94187 0.92379 0.95530 1.21170 0.97634 0.92828 1.00365 1.21734 0.98065 0.91952 1.05395 1.21056 0.89311 0.84418 0.74312 1.90656 1.18818 1.84831 1.51366 1.48076 1.07376 1.05433 1.73469 1.21825 0.93612 0.86669 1.00121 1.21829 0.96198 1.00136 0.97909 1.22113 0.94267 0.96330 1.05029 1.21958 0.76698 0.97169 1.00273 0.89353 1.92816 1.36260 1.92772 1.97809 1.22410 0.80507 1.01679 0.99804 0.92653 0.98070 0.98080 0.94003 0.94016 0.87521 0.87598 0.90568 0.89536 0.87457 0.91930 0.89422 0.89170 0.88437 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.55 -32.39 9.11 25.60 0.23 -32.16 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.08 -3.62 4.44 30.60 0.14 -3.48 16 11 C -0.13 -4.33 4.05 29.85 0.12 -4.21 16 12 C 0.52 16.54 7.70 87.66 0.67 17.22 16 13 O -0.58 -23.19 15.39 -3.02 -0.05 -23.23 16 14 N -0.61 -13.91 2.98 -818.91 -2.44 -16.35 16 15 C 0.10 1.82 6.43 86.36 0.56 2.38 16 16 C -0.12 -1.55 6.08 30.67 0.19 -1.36 16 17 C -0.14 -1.62 5.62 30.62 0.17 -1.45 16 18 C 0.08 1.20 4.03 30.66 0.12 1.33 16 19 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 20 F -0.22 -4.16 17.09 44.97 0.77 -3.39 16 21 C 0.08 1.39 6.07 86.34 0.52 1.92 16 22 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 23 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 24 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 26 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 27 H 0.11 3.13 7.95 -2.39 -0.02 3.11 16 28 H 0.11 3.10 7.69 -2.39 -0.02 3.08 16 29 H 0.08 1.76 7.01 -2.39 -0.02 1.74 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.84 5.95 -2.39 -0.01 1.82 16 Total: -1.00 -71.07 297.69 4.97 -66.09 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 1.05 Total: 3.48 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 3.34 Total: -17.59 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -2.16 Total: -72.61 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.77 Total: -3.39 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -71.07 4.97 -66.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594055299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.970 kcal (2) G-P(sol) polarization free energy of solvation -71.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds