Wall clock time and date at job start Mon Mar 30 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46935 * 120.63062 * 359.71975 * 14 12 11 16 16 C 1.52762 * 109.00594 * 233.58783 * 15 14 12 17 17 C 1.53038 * 109.38057 * 305.58243 * 16 15 14 18 18 C 1.53046 * 109.54065 * 61.24607 * 17 16 15 19 19 H 1.09004 * 109.49319 * 58.58012 * 18 17 16 20 20 F 1.39895 * 109.49920 * 178.68291 * 18 17 16 21 21 C 1.46924 * 120.63274 * 179.97438 * 14 12 11 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 28 28 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 29 29 H 1.09000 * 109.58572 * 353.41668 * 15 14 12 30 30 H 1.08992 * 109.58559 * 113.84498 * 15 14 12 31 31 H 1.09000 * 109.56135 * 185.55694 * 16 15 14 32 32 H 1.08993 * 109.39227 * 65.50894 * 16 15 14 33 33 H 1.09000 * 109.46387 * 301.22564 * 17 16 15 34 34 H 1.09000 * 109.45938 * 181.26424 * 17 16 15 35 35 H 1.08999 * 109.58779 * 246.15227 * 21 14 12 36 36 H 1.09001 * 109.58663 * 6.43692 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4593 -6.1326 -0.0214 13 8 3.6517 -5.9110 -0.0199 14 7 2.0100 -7.4032 -0.0270 15 6 0.5685 -7.6876 -0.0228 16 6 0.2511 -8.6318 1.1354 17 6 1.1371 -9.8755 1.0341 18 6 2.6083 -9.4653 1.1324 19 1 2.7795 -8.9488 2.0769 20 9 3.4161 -10.6057 1.0699 21 6 2.9524 -8.5304 -0.0319 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.8718 -3.6005 -0.9002 26 1 2.8717 -3.6084 0.8798 27 1 0.8531 -5.0490 0.8724 28 1 0.8537 -5.0406 -0.9075 29 1 0.0131 -6.7581 0.1027 30 1 0.2865 -8.1600 -0.9636 31 1 -0.7971 -8.9271 1.0887 32 1 0.4442 -8.1235 2.0800 33 1 0.9611 -10.3700 0.0788 34 1 0.8959 -10.5603 1.8471 35 1 2.8682 -9.0730 -0.9736 36 1 3.9696 -8.1568 0.0849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594055300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:04 Heat of formation + Delta-G solvation = -112.736666 kcal Electronic energy + Delta-G solvation = -17476.012574 eV Core-core repulsion = 14487.412241 eV Total energy + Delta-G solvation = -2988.600332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.90612 -40.08919 -37.30503 -34.27353 -32.87983 -32.12454 -30.89451 -27.96005 -25.69281 -23.86158 -23.16708 -21.35194 -20.20604 -18.91366 -17.15847 -16.50963 -16.23198 -16.04519 -15.63874 -15.31565 -15.09425 -14.41649 -14.02930 -13.78988 -13.60312 -13.01017 -12.78278 -12.60691 -12.25887 -11.85705 -11.61144 -11.41224 -11.36728 -11.14722 -10.83180 -10.74491 -10.56630 -10.51297 -9.71197 -9.69410 -9.29215 -9.02279 -8.78168 -8.33062 -5.98654 -3.99852 2.78162 2.87063 3.33355 3.40752 3.46644 4.13430 4.24254 4.35759 4.48546 4.50327 4.69988 4.85174 4.99520 5.13284 5.28281 5.37708 5.39948 5.47030 5.48986 5.60016 5.64069 5.67001 5.70047 5.90372 6.19503 6.38757 6.70116 6.90851 7.13978 7.34391 7.69862 7.82061 8.02010 8.31128 8.46146 9.07409 9.64288 11.12893 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.052363 B = 0.004004 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.605352 B = 6991.736654 C = 7367.587584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.136 4.136 12 C 0.517 3.483 13 O -0.534 6.534 14 N -0.621 5.621 15 C 0.102 3.898 16 C -0.134 4.134 17 C -0.145 4.145 18 C 0.078 3.922 19 H 0.087 0.913 20 F -0.210 7.210 21 C 0.088 3.912 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -20.298 1.356 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.176 4.176 12 C 0.307 3.693 13 O -0.409 6.409 14 N -0.357 5.357 15 C -0.020 4.020 16 C -0.172 4.172 17 C -0.183 4.183 18 C 0.040 3.960 19 H 0.105 0.895 20 F -0.191 7.191 21 C -0.036 4.036 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.010 -20.059 1.346 20.130 hybrid contribution 0.324 0.721 0.011 0.790 sum -0.686 -19.339 1.357 19.398 Atomic orbital electron populations 1.69973 1.06036 1.26431 1.51308 1.25018 0.94855 0.99260 0.95372 0.86540 0.80254 0.83743 0.77524 1.19675 1.21034 1.21039 1.21313 0.93242 0.90990 1.50021 0.92518 1.19134 0.93952 0.91465 0.97122 1.21473 0.98688 0.91499 1.01756 1.21878 0.98133 0.93909 1.03655 1.21363 0.90341 0.83281 0.74323 1.90676 1.17388 1.84047 1.48776 1.48146 1.06610 1.05492 1.75422 1.21747 0.80777 1.00891 0.98620 1.21828 1.00201 0.95532 0.99687 1.22124 0.93480 0.98816 1.03846 1.21941 0.89703 0.83418 1.00900 0.89488 1.92812 1.75368 1.53056 1.97817 1.22003 0.96148 0.87764 0.97658 0.93128 0.96600 0.96581 0.92659 0.92669 0.89262 0.89230 0.88403 0.91105 0.89605 0.90825 0.90519 0.90460 0.90698 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.06 4.44 -26.74 -0.12 -2.18 16 11 C -0.14 -2.20 4.05 -27.88 -0.11 -2.32 16 12 C 0.52 8.31 7.70 -10.98 -0.08 8.23 16 13 O -0.53 -10.68 15.39 5.56 0.09 -10.59 16 14 N -0.62 -7.52 2.98 -173.00 -0.52 -8.03 16 15 C 0.10 0.88 6.31 -3.93 -0.02 0.86 16 16 C -0.13 -0.93 6.06 -26.83 -0.16 -1.10 16 17 C -0.14 -1.07 5.62 -26.69 -0.15 -1.22 16 18 C 0.08 0.75 4.03 -26.59 -0.11 0.64 16 19 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 20 F -0.21 -2.35 17.09 2.25 0.04 -2.32 16 21 C 0.09 0.99 6.18 -3.69 -0.02 0.97 16 22 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 26 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 27 H 0.09 1.29 7.68 -51.93 -0.40 0.89 16 28 H 0.09 1.31 7.95 -51.93 -0.41 0.90 16 29 H 0.10 0.82 5.93 -51.93 -0.31 0.51 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.35 7.00 -51.93 -0.36 0.99 16 LS Contribution 297.64 15.07 4.49 4.49 Total: -1.00 -32.86 297.64 -7.19 -40.05 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -5.67 Total: -4.90 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.33 Total: -9.45 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.22 Total: -34.21 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.86 -7.19 -40.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594055300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.683 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds