Wall clock time and date at job start Mon Mar 30 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46935 * 120.63062 * 359.71975 * 14 12 11 16 16 C 1.52762 * 109.00594 * 233.58783 * 15 14 12 17 17 C 1.53038 * 109.38057 * 305.58243 * 16 15 14 18 18 C 1.53046 * 109.54065 * 61.24607 * 17 16 15 19 19 H 1.09004 * 109.49319 * 58.58012 * 18 17 16 20 20 F 1.39895 * 109.49920 * 178.68291 * 18 17 16 21 21 C 1.46924 * 120.63274 * 179.97438 * 14 12 11 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 28 28 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 29 29 H 1.09000 * 109.58572 * 353.41668 * 15 14 12 30 30 H 1.08992 * 109.58559 * 113.84498 * 15 14 12 31 31 H 1.09000 * 109.56135 * 185.55694 * 16 15 14 32 32 H 1.08993 * 109.39227 * 65.50894 * 16 15 14 33 33 H 1.09000 * 109.46387 * 301.22564 * 17 16 15 34 34 H 1.09000 * 109.45938 * 181.26424 * 17 16 15 35 35 H 1.08999 * 109.58779 * 246.15227 * 21 14 12 36 36 H 1.09001 * 109.58663 * 6.43692 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4593 -6.1326 -0.0214 13 8 3.6517 -5.9110 -0.0199 14 7 2.0100 -7.4032 -0.0270 15 6 0.5685 -7.6876 -0.0228 16 6 0.2511 -8.6318 1.1354 17 6 1.1371 -9.8755 1.0341 18 6 2.6083 -9.4653 1.1324 19 1 2.7795 -8.9488 2.0769 20 9 3.4161 -10.6057 1.0699 21 6 2.9524 -8.5304 -0.0319 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.8718 -3.6005 -0.9002 26 1 2.8717 -3.6084 0.8798 27 1 0.8531 -5.0490 0.8724 28 1 0.8537 -5.0406 -0.9075 29 1 0.0131 -6.7581 0.1027 30 1 0.2865 -8.1600 -0.9636 31 1 -0.7971 -8.9271 1.0887 32 1 0.4442 -8.1235 2.0800 33 1 0.9611 -10.3700 0.0788 34 1 0.8959 -10.5603 1.8471 35 1 2.8682 -9.0730 -0.9736 36 1 3.9696 -8.1568 0.0849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594055300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:03 Heat of formation + Delta-G solvation = -132.644686 kcal Electronic energy + Delta-G solvation = -17476.875850 eV Core-core repulsion = 14487.412241 eV Total energy + Delta-G solvation = -2989.463609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 243.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.74715 -41.21607 -38.31883 -36.15695 -34.17284 -33.62946 -31.85186 -29.65020 -26.85701 -25.42223 -24.07324 -22.53844 -21.66189 -20.00819 -18.55460 -18.12466 -17.34743 -17.08879 -16.69967 -16.49096 -16.23269 -16.04152 -15.15704 -15.01063 -14.49180 -14.26201 -14.03394 -13.86116 -13.61026 -13.36889 -13.10585 -12.64440 -12.57067 -12.43515 -12.23436 -11.99742 -11.90810 -11.56474 -11.46531 -11.44817 -11.21700 -10.78424 -10.53888 -9.76696 -8.20064 -6.29505 1.39582 1.40291 1.53760 1.54776 1.85062 2.42099 3.13162 3.39629 3.44464 3.63964 3.76421 3.83462 4.03302 4.16356 4.23868 4.28407 4.40959 4.55150 4.69325 4.75003 4.77255 4.85476 4.95536 5.04264 5.05634 5.09667 5.19256 5.32049 5.47875 5.54999 5.75968 5.87064 6.24249 6.31177 6.85777 7.10379 7.39151 8.91552 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.052363 B = 0.004004 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.605352 B = 6991.736654 C = 7367.587584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.049 0.951 9 C 0.027 3.973 10 C -0.084 4.084 11 C -0.126 4.126 12 C 0.516 3.484 13 O -0.584 6.584 14 N -0.610 5.610 15 C 0.092 3.908 16 C -0.128 4.128 17 C -0.139 4.139 18 C 0.079 3.921 19 H 0.082 0.918 20 F -0.219 7.219 21 C 0.086 3.914 22 H 0.265 0.735 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 -21.222 1.362 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.067 0.933 9 C -0.010 4.010 10 C -0.122 4.122 11 C -0.165 4.165 12 C 0.306 3.694 13 O -0.464 6.464 14 N -0.343 5.343 15 C -0.029 4.029 16 C -0.166 4.166 17 C -0.177 4.177 18 C 0.042 3.958 19 H 0.100 0.900 20 F -0.200 7.200 21 C -0.038 4.038 22 H 0.073 0.927 23 H 0.022 0.978 24 H 0.021 0.979 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.206 -21.029 1.354 21.188 hybrid contribution 0.654 0.953 0.001 1.156 sum -1.552 -20.076 1.356 20.181 Atomic orbital electron populations 1.70064 1.07404 1.27705 1.51627 1.25868 0.95814 1.02930 0.94692 0.85475 0.78867 0.79143 0.78033 1.19384 1.20049 1.20043 1.21720 0.93293 0.92892 1.50661 0.93251 1.19013 0.94145 0.92176 0.95693 1.21187 0.97708 0.93117 1.00196 1.21699 0.97801 0.91252 1.05748 1.21227 0.89378 0.84555 0.74211 1.90660 1.19209 1.84986 1.51555 1.48125 1.08500 1.04299 1.73425 1.22121 0.78191 1.01960 1.00647 1.21825 1.01657 0.94696 0.98438 1.22119 0.91245 0.99290 1.05011 1.21977 0.91297 0.82778 0.99758 0.89961 1.92796 1.75953 1.53426 1.97780 1.22061 0.94740 0.87667 0.99310 0.92651 0.97839 0.97869 0.94266 0.94229 0.87090 0.87139 0.87923 0.88921 0.86776 0.91453 0.89436 0.89185 0.89121 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.55 -32.11 9.11 25.60 0.23 -31.88 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.08 -3.67 4.44 30.59 0.14 -3.54 16 11 C -0.13 -3.97 4.05 29.85 0.12 -3.85 16 12 C 0.52 16.45 7.70 87.66 0.67 17.12 16 13 O -0.58 -24.09 15.39 -3.02 -0.05 -24.13 16 14 N -0.61 -13.89 2.98 -819.64 -2.44 -16.33 16 15 C 0.09 1.30 6.31 86.22 0.54 1.84 16 16 C -0.13 -1.33 6.06 30.53 0.19 -1.15 16 17 C -0.14 -1.61 5.62 30.62 0.17 -1.44 16 18 C 0.08 1.41 4.03 30.69 0.12 1.54 16 19 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 20 F -0.22 -4.65 17.09 44.97 0.77 -3.88 16 21 C 0.09 1.86 6.18 86.38 0.53 2.39 16 22 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 23 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 24 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 25 H 0.04 1.81 8.10 -2.38 -0.02 1.79 16 26 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 27 H 0.11 3.03 7.68 -2.39 -0.02 3.01 16 28 H 0.11 3.04 7.95 -2.39 -0.02 3.02 16 29 H 0.10 1.39 5.93 -2.39 -0.01 1.38 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 2.07 7.00 -2.39 -0.02 2.05 16 Total: -1.00 -71.94 297.64 4.97 -66.97 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 1.05 Total: 2.39 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.33 Total: -16.65 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -2.16 Total: -71.76 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.77 Total: -3.88 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.94 4.97 -66.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594055300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.673 kcal (2) G-P(sol) polarization free energy of solvation -71.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds