Wall clock time and date at job start Mon Mar 30 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00305 * 2 1 4 4 H 1.48494 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47336 * 300.00460 * 3 2 1 6 6 H 1.48501 * 109.46742 * 60.00448 * 3 2 1 7 7 C 1.37874 * 119.99377 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00346 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.52109 * 111.11743 * 79.86892 * 10 9 7 12 12 C 1.56742 * 98.70611 * 117.55156 * 11 10 9 13 13 C 1.55991 * 107.19204 * 319.05989 * 12 11 10 14 14 C 1.50240 * 110.99787 * 190.89794 * 10 9 7 15 15 C 1.50698 * 117.57949 * 63.41964 * 14 10 9 16 16 C 1.38232 * 119.99907 * 29.94054 * 15 14 10 17 17 C 1.38238 * 120.00070 * 179.79050 * 16 15 14 18 18 C 1.38238 * 119.99511 * 0.46399 * 17 16 15 19 19 C 1.38235 * 120.00448 * 359.76622 * 18 17 16 20 20 C 1.38233 * 119.99667 * 0.02777 * 19 18 17 21 21 C 1.54880 * 103.48557 * 198.23043 * 14 10 9 22 22 H 0.97001 * 119.99264 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47001 * 59.99772 * 9 7 2 24 24 H 1.09001 * 109.46518 * 299.99449 * 9 7 2 25 25 H 1.09004 * 111.35179 * 0.36119 * 11 10 9 26 26 H 1.09002 * 112.02761 * 234.99937 * 11 10 9 27 27 H 1.09002 * 118.44666 * 179.07546 * 12 11 10 28 28 H 1.08999 * 114.52279 * 171.47897 * 13 12 11 29 29 H 1.08997 * 114.52092 * 305.15236 * 13 12 11 30 30 H 1.08000 * 119.99997 * 359.97438 * 16 15 14 31 31 H 1.07994 * 119.99775 * 180.25195 * 17 16 15 32 32 H 1.08005 * 119.99601 * 179.79545 * 18 17 16 33 33 H 1.07992 * 120.00062 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.00019 * 179.97438 * 20 19 18 35 35 H 1.09000 * 114.44164 * 312.48392 * 21 14 10 36 36 H 1.09000 * 114.44235 * 179.07691 * 21 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 2.7502 -3.8707 1.3957 12 6 2.2073 -5.3269 1.5999 13 6 0.7587 -5.3640 1.0225 14 6 1.5086 -4.9199 -0.2678 15 6 0.8352 -5.0907 -1.6050 16 6 1.3327 -4.4387 -2.7177 17 6 0.7175 -4.5988 -3.9453 18 6 -0.4009 -5.4034 -4.0581 19 6 -0.9012 -6.0517 -2.9445 20 6 -0.2835 -5.8949 -1.7178 21 6 2.5234 -5.9795 0.2284 22 1 -0.4849 0.8401 0.0004 23 1 0.6245 -2.5563 -0.8920 24 1 0.6240 -2.5574 0.8881 25 1 2.3208 -3.1799 2.1213 26 1 3.8396 -3.8444 1.4208 27 1 2.4385 -5.8411 2.5328 28 1 0.3181 -6.3596 0.9697 29 1 0.0870 -4.6123 1.4370 30 1 2.2038 -3.8065 -2.6286 31 1 1.1086 -4.0926 -4.8154 32 1 -0.8835 -5.5259 -5.0166 33 1 -1.7747 -6.6806 -3.0328 34 1 -0.6746 -6.4011 -0.8476 35 1 3.5444 -5.8242 -0.1203 36 1 2.1832 -7.0104 0.1303 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595912242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:12 Heat of formation + Delta-G solvation = 90.142058 kcal Electronic energy + Delta-G solvation = -17504.372145 eV Core-core repulsion = 14955.338519 eV Total energy + Delta-G solvation = -2549.033626 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.83409 -38.23737 -33.47122 -31.42843 -31.10967 -30.38849 -26.99495 -26.06692 -24.89497 -22.69927 -22.03833 -21.55101 -19.45147 -18.46316 -16.69139 -16.24801 -15.28638 -14.91999 -14.44659 -14.14669 -14.09055 -13.56870 -13.00535 -12.81589 -12.27507 -12.11381 -12.03115 -11.58067 -11.50944 -11.17704 -10.96578 -10.78695 -10.69200 -10.50311 -10.17330 -10.02553 -9.82960 -9.67135 -9.18639 -8.50659 -8.42528 -8.18438 -7.49522 -6.00424 -4.01792 1.73434 1.83334 3.31624 3.39003 3.44119 4.14488 4.40157 4.61621 4.77230 4.89928 5.08196 5.13687 5.31890 5.33561 5.35914 5.49962 5.58247 5.85335 5.94889 5.99822 6.04307 6.13414 6.20356 6.31661 6.38720 6.45467 6.47104 6.51190 6.61794 6.83348 6.84835 6.94630 7.18856 7.33445 7.42276 7.78078 7.93169 8.15159 8.50310 9.06509 9.62160 11.10366 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.008330 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.360441 B = 3360.515361 C = 4251.952186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.179 3.821 10 N -0.469 5.469 11 C 0.045 3.955 12 C -0.146 4.146 13 C -0.160 4.160 14 C 0.089 3.911 15 C -0.034 4.034 16 C -0.085 4.085 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.116 4.116 21 C -0.128 4.128 22 H 0.260 0.740 23 H 0.033 0.967 24 H -0.005 1.005 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.133 0.867 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 -12.607 -2.253 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.053 3.947 10 N -0.193 5.193 11 C -0.082 4.082 12 C -0.164 4.164 13 C -0.199 4.199 14 C -0.001 4.001 15 C -0.035 4.035 16 C -0.103 4.103 17 C -0.143 4.143 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.134 4.134 21 C -0.165 4.165 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.013 0.987 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.151 0.849 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.220 -12.285 -2.694 12.636 hybrid contribution -0.448 0.875 0.645 1.176 sum 0.772 -11.410 -2.049 11.618 Atomic orbital electron populations 1.69985 1.06028 1.26557 1.51118 1.24985 0.94841 0.99247 0.95541 0.86466 0.80117 0.83524 0.77478 1.19652 1.21049 1.21141 1.21149 0.93528 0.89796 1.49819 0.91921 1.19944 0.90528 0.87668 0.96592 1.67591 1.29663 1.00237 1.21786 1.24054 0.99811 0.92613 0.91739 1.24597 0.96802 0.98130 0.96898 1.24391 0.96038 1.01180 0.98259 1.22685 0.94175 0.93083 0.90189 1.18988 0.94777 0.96459 0.93264 1.21178 1.00176 0.97406 0.91529 1.21149 0.96428 0.98993 0.97709 1.21050 0.97043 0.98324 0.98275 1.20968 0.99992 1.00770 0.92936 1.20923 0.95658 0.99431 0.97410 1.23840 0.99470 0.97049 0.96180 0.93046 0.94864 0.98704 0.91289 0.90165 0.88362 0.89530 0.91368 0.84882 0.86386 0.86739 0.86637 0.86580 0.91087 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.50 -14.34 9.16 -34.44 -0.32 -14.65 16 8 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 9 C 0.18 4.70 4.21 -4.97 -0.02 4.68 16 10 N -0.47 -10.23 5.07 -216.14 -1.09 -11.33 16 11 C 0.05 0.87 6.84 1.17 0.01 0.87 16 12 C -0.15 -2.29 6.35 -91.83 -0.58 -2.87 16 13 C -0.16 -2.67 6.59 -30.40 -0.20 -2.87 16 14 C 0.09 1.65 1.46 -134.41 -0.20 1.45 16 15 C -0.03 -0.63 4.98 -104.62 -0.52 -1.15 16 16 C -0.08 -1.57 8.89 -39.58 -0.35 -1.92 16 17 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 18 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 19 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 20 C -0.12 -1.85 9.44 -39.58 -0.37 -2.22 16 21 C -0.13 -1.98 7.29 -31.32 -0.23 -2.21 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.03 0.96 6.92 -51.93 -0.36 0.60 16 24 H 0.00 -0.14 7.04 -51.93 -0.37 -0.50 16 25 H 0.07 1.42 7.58 -51.93 -0.39 1.03 16 26 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.09 1.21 7.03 -51.93 -0.36 0.85 16 29 H 0.07 1.29 7.41 -51.93 -0.38 0.90 16 30 H 0.13 2.64 7.80 -52.49 -0.41 2.23 16 31 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.12 1.64 6.68 -52.49 -0.35 1.29 16 35 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 LS Contribution 292.99 15.07 4.42 4.42 Total: -1.00 -30.50 292.99 -10.15 -40.66 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.12 Total: 1.99 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -4.07 Total: -26.31 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.36 Total: -37.62 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.50 -10.15 -40.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595912242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.798 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds