Wall clock time and date at job start Mon Mar 30 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00305 * 2 1 4 4 H 1.48494 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47336 * 300.00460 * 3 2 1 6 6 H 1.48501 * 109.46742 * 60.00448 * 3 2 1 7 7 C 1.37874 * 119.99377 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00346 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.52109 * 111.11743 * 79.86892 * 10 9 7 12 12 C 1.56742 * 98.70611 * 117.55156 * 11 10 9 13 13 C 1.55991 * 107.19204 * 319.05989 * 12 11 10 14 14 C 1.50240 * 110.99787 * 190.89794 * 10 9 7 15 15 C 1.50698 * 117.57949 * 63.41964 * 14 10 9 16 16 C 1.38232 * 119.99907 * 29.94054 * 15 14 10 17 17 C 1.38238 * 120.00070 * 179.79050 * 16 15 14 18 18 C 1.38238 * 119.99511 * 0.46399 * 17 16 15 19 19 C 1.38235 * 120.00448 * 359.76622 * 18 17 16 20 20 C 1.38233 * 119.99667 * 0.02777 * 19 18 17 21 21 C 1.54880 * 103.48557 * 198.23043 * 14 10 9 22 22 H 0.97001 * 119.99264 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47001 * 59.99772 * 9 7 2 24 24 H 1.09001 * 109.46518 * 299.99449 * 9 7 2 25 25 H 1.09004 * 111.35179 * 0.36119 * 11 10 9 26 26 H 1.09002 * 112.02761 * 234.99937 * 11 10 9 27 27 H 1.09002 * 118.44666 * 179.07546 * 12 11 10 28 28 H 1.08999 * 114.52279 * 171.47897 * 13 12 11 29 29 H 1.08997 * 114.52092 * 305.15236 * 13 12 11 30 30 H 1.08000 * 119.99997 * 359.97438 * 16 15 14 31 31 H 1.07994 * 119.99775 * 180.25195 * 17 16 15 32 32 H 1.08005 * 119.99601 * 179.79545 * 18 17 16 33 33 H 1.07992 * 120.00062 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.00019 * 179.97438 * 20 19 18 35 35 H 1.09000 * 114.44164 * 312.48392 * 21 14 10 36 36 H 1.09000 * 114.44235 * 179.07691 * 21 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 2.7502 -3.8707 1.3957 12 6 2.2073 -5.3269 1.5999 13 6 0.7587 -5.3640 1.0225 14 6 1.5086 -4.9199 -0.2678 15 6 0.8352 -5.0907 -1.6050 16 6 1.3327 -4.4387 -2.7177 17 6 0.7175 -4.5988 -3.9453 18 6 -0.4009 -5.4034 -4.0581 19 6 -0.9012 -6.0517 -2.9445 20 6 -0.2835 -5.8949 -1.7178 21 6 2.5234 -5.9795 0.2284 22 1 -0.4849 0.8401 0.0004 23 1 0.6245 -2.5563 -0.8920 24 1 0.6240 -2.5574 0.8881 25 1 2.3208 -3.1799 2.1213 26 1 3.8396 -3.8444 1.4208 27 1 2.4385 -5.8411 2.5328 28 1 0.3181 -6.3596 0.9697 29 1 0.0870 -4.6123 1.4370 30 1 2.2038 -3.8065 -2.6286 31 1 1.1086 -4.0926 -4.8154 32 1 -0.8835 -5.5259 -5.0166 33 1 -1.7747 -6.6806 -3.0328 34 1 -0.6746 -6.4011 -0.8476 35 1 3.5444 -5.8242 -0.1203 36 1 2.1832 -7.0104 0.1303 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595912242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:11 Heat of formation + Delta-G solvation = 72.031547 kcal Electronic energy + Delta-G solvation = -17505.157476 eV Core-core repulsion = 14955.338519 eV Total energy + Delta-G solvation = -2549.818957 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.24410 -39.47731 -35.53262 -33.31165 -32.38042 -31.65323 -28.77074 -27.75945 -26.26422 -24.39319 -23.28972 -23.13987 -20.87722 -19.89588 -18.45510 -18.00237 -16.74791 -16.37056 -16.29377 -15.45467 -15.43048 -15.16095 -14.43595 -14.26852 -14.01957 -13.78182 -13.64938 -13.09072 -12.94074 -12.74758 -12.67838 -12.34803 -12.23614 -12.09665 -11.81832 -11.63246 -11.32311 -11.25118 -11.06688 -10.63603 -9.73996 -9.49506 -9.20795 -8.23129 -6.33731 0.49900 0.58350 1.36480 1.37308 1.51270 2.36745 2.89460 3.07974 3.11338 3.43558 3.53741 3.74028 3.81884 4.09352 4.20256 4.23608 4.35443 4.56921 4.66890 4.74425 4.75651 4.76394 4.86284 4.91432 4.96489 5.10039 5.14282 5.18698 5.20999 5.24726 5.29744 5.58403 5.62951 5.68367 5.78918 5.98960 6.12520 6.20962 6.49184 6.82308 7.35979 8.88099 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.008330 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.360441 B = 3360.515361 C = 4251.952186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.208 3.792 10 N -0.488 5.488 11 C 0.036 3.964 12 C -0.128 4.128 13 C -0.155 4.155 14 C 0.065 3.935 15 C -0.058 4.058 16 C -0.117 4.117 17 C -0.134 4.134 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.109 4.109 22 H 0.264 0.736 23 H -0.002 1.002 24 H -0.039 1.039 25 H 0.043 0.957 26 H 0.093 0.907 27 H 0.136 0.864 28 H 0.124 0.876 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 -14.370 -2.452 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.081 3.919 10 N -0.211 5.211 11 C -0.091 4.091 12 C -0.147 4.147 13 C -0.193 4.193 14 C -0.025 4.025 15 C -0.058 4.058 16 C -0.136 4.136 17 C -0.152 4.152 18 C -0.145 4.145 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.146 4.146 22 H 0.073 0.927 23 H 0.016 0.984 24 H -0.022 1.022 25 H 0.062 0.938 26 H 0.111 0.889 27 H 0.154 0.846 28 H 0.142 0.858 29 H 0.053 0.947 30 H 0.121 0.879 31 H 0.150 0.850 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.200 -14.067 -2.889 14.411 hybrid contribution -0.476 1.386 0.661 1.608 sum 0.724 -12.681 -2.228 12.896 Atomic orbital electron populations 1.70115 1.07733 1.27745 1.51809 1.25925 0.95750 1.03189 0.94784 0.85338 0.78934 0.78537 0.77847 1.18799 1.20318 1.20145 1.21465 0.93449 0.91264 1.49973 0.92406 1.19395 0.90205 0.89235 0.93111 1.67454 1.29058 1.00976 1.23642 1.24122 1.00417 0.94876 0.89732 1.24540 0.95611 0.95732 0.98772 1.24502 0.96041 1.01981 0.96799 1.22932 0.96170 0.92028 0.91375 1.19176 0.96085 0.97669 0.92914 1.21109 1.00484 0.98621 0.93337 1.21391 0.97085 0.99493 0.97202 1.21462 0.96065 0.97012 0.99986 1.21434 1.00430 1.00221 0.92084 1.21192 0.94832 0.99175 0.99011 1.23809 0.98408 0.97623 0.94801 0.92735 0.98368 1.02171 0.93847 0.88882 0.84617 0.85767 0.94676 0.87944 0.84992 0.83346 0.83033 0.84669 0.91536 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.22 13.29 21.45 0.28 -57.94 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 45.85 29.54 68.60 2.03 47.87 16 4 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.52 -31.17 9.16 25.60 0.23 -30.93 16 8 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.21 11.67 4.21 85.56 0.36 12.03 16 10 N -0.49 -22.29 5.07 -837.73 -4.24 -26.54 16 11 C 0.04 1.40 6.84 86.57 0.59 1.99 16 12 C -0.13 -3.80 6.35 -11.58 -0.07 -3.87 16 13 C -0.15 -5.00 6.59 28.22 0.19 -4.82 16 14 C 0.07 2.43 1.46 -0.16 0.00 2.43 16 15 C -0.06 -2.14 4.98 -19.87 -0.10 -2.24 16 16 C -0.12 -4.53 8.89 22.27 0.20 -4.34 16 17 C -0.13 -4.29 10.05 22.27 0.22 -4.06 16 18 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 19 C -0.12 -3.23 10.05 22.27 0.22 -3.01 16 20 C -0.12 -3.76 9.44 22.27 0.21 -3.55 16 21 C -0.11 -3.15 7.29 27.62 0.20 -2.95 16 22 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 23 H 0.00 -0.11 6.92 -2.39 -0.02 -0.13 16 24 H -0.04 -2.42 7.04 -2.39 -0.02 -2.43 16 25 H 0.04 1.88 7.58 -2.38 -0.02 1.86 16 26 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 27 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.12 3.06 7.03 -2.39 -0.02 3.05 16 29 H 0.03 1.36 7.41 -2.39 -0.02 1.34 16 30 H 0.10 4.45 7.80 -2.91 -0.02 4.43 16 31 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 32 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 33 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.14 3.46 6.68 -2.91 -0.02 3.44 16 35 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 36 H 0.11 2.54 7.86 -2.39 -0.02 2.52 16 Total: -1.00 -70.14 292.99 2.06 -68.08 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.05 Total: 14.48 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 2.94 Total: -45.96 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -3.96 Total: -84.48 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -70.14 2.06 -68.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595912242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.111 kcal (2) G-P(sol) polarization free energy of solvation -70.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds