Wall clock time and date at job start Mon Mar 30 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00135 * 2 1 4 4 H 1.48499 * 109.46696 * 269.99865 * 3 2 1 5 5 H 1.48495 * 109.46851 * 29.99576 * 3 2 1 6 6 H 1.48499 * 109.47294 * 149.99378 * 3 2 1 7 7 C 1.37877 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99948 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00106 * 180.02562 * 7 2 1 10 10 C 1.53516 * 114.16939 * 179.97438 * 9 7 2 11 11 N 1.47478 * 87.93405 * 220.13947 * 10 9 7 12 12 C 1.46890 * 110.99930 * 138.70578 * 11 10 9 13 13 C 1.50704 * 109.47255 * 170.00126 * 12 11 10 14 14 C 1.32560 * 119.99974 * 127.12716 * 13 12 11 15 15 C 1.47815 * 120.00402 * 8.51854 * 14 13 12 16 16 C 1.39533 * 120.13928 * 217.94455 * 15 14 13 17 17 C 1.37983 * 119.85313 * 180.02562 * 16 15 14 18 18 C 1.38348 * 120.14002 * 359.97438 * 17 16 15 19 19 C 1.38346 * 120.28729 * 0.02562 * 18 17 16 20 20 C 1.37972 * 120.14493 * 0.02562 * 19 18 17 21 21 C 1.47488 * 87.83253 * 27.01214 * 11 10 9 22 22 H 0.96993 * 120.00050 * 0.02562 * 1 2 3 23 23 H 1.08999 * 113.25826 * 312.94880 * 9 7 2 24 24 H 1.09007 * 113.47323 * 105.37483 * 10 9 7 25 25 H 1.08994 * 113.53270 * 334.92133 * 10 9 7 26 26 H 1.09003 * 109.47575 * 49.99932 * 12 11 10 27 27 H 1.09005 * 109.47545 * 290.00324 * 12 11 10 28 28 H 1.08002 * 119.99777 * 307.13655 * 13 12 11 29 29 H 1.08007 * 120.00035 * 188.50854 * 14 13 12 30 30 H 1.07988 * 120.07584 * 0.03559 * 16 15 14 31 31 H 1.07992 * 119.92841 * 180.02562 * 17 16 15 32 32 H 1.08004 * 119.85490 * 179.74608 * 18 17 16 33 33 H 1.08001 * 119.92618 * 179.97438 * 19 18 17 34 34 H 1.07993 * 120.07696 * 180.02562 * 20 19 18 35 35 H 1.08992 * 113.47388 * 87.75688 * 21 11 10 36 36 H 1.08998 * 113.46880 * 218.22214 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.1402 -2.5946 0.0023 11 7 5.1460 -2.0841 0.9524 12 6 5.4199 -3.0681 2.0081 13 6 6.6154 -2.6238 2.8110 14 6 6.5317 -2.5360 4.1310 15 6 5.3359 -3.0498 4.8317 16 6 4.8208 -2.3649 5.9329 17 6 3.7046 -2.8501 6.5829 18 6 3.0961 -4.0127 6.1446 19 6 3.6019 -4.6964 5.0535 20 6 4.7181 -4.2224 4.3954 21 6 4.1437 -1.0975 1.3967 22 1 -0.4850 0.8400 -0.0004 23 1 3.9423 -0.5119 -0.7319 24 1 4.5602 -2.8828 -0.9614 25 1 3.4924 -3.3619 0.4261 26 1 5.6261 -4.0383 1.5560 27 1 4.5523 -3.1496 2.6630 28 1 7.5402 -2.3769 2.3109 29 1 7.3374 -2.0891 4.6947 30 1 5.2946 -1.4570 6.2755 31 1 3.3047 -2.3208 7.4350 32 1 2.2250 -4.3906 6.6594 33 1 3.1225 -5.6037 4.7166 34 1 5.1118 -4.7568 3.5435 35 1 3.4964 -1.4645 2.1930 36 1 4.5669 -0.1169 1.6148 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597193628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:00 Heat of formation + Delta-G solvation = 81.589249 kcal Electronic energy + Delta-G solvation = -16902.101592 eV Core-core repulsion = 14352.697088 eV Total energy + Delta-G solvation = -2549.404504 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.62057 -38.73434 -34.89216 -32.53141 -31.03119 -30.28958 -28.63934 -25.83546 -24.97822 -23.02701 -22.42271 -21.45250 -19.15929 -18.51698 -17.08335 -16.37065 -15.68452 -15.34737 -14.71758 -14.51609 -14.36273 -13.75771 -13.41853 -13.31049 -12.97351 -12.49236 -12.45338 -11.93560 -11.76014 -11.31458 -11.11017 -11.00309 -10.73088 -10.37440 -9.95599 -9.92997 -9.70290 -9.39768 -9.11584 -8.83330 -8.54392 -8.23289 -7.95739 -6.09409 -4.09520 1.14021 1.48559 2.49079 3.30645 3.38821 3.44563 3.92931 4.43464 4.77104 4.90924 4.95140 5.03990 5.15456 5.18721 5.29015 5.49484 5.52888 5.60833 5.74309 5.84836 6.00050 6.03919 6.11564 6.22884 6.32798 6.43196 6.45255 6.51519 6.53368 6.59405 6.71035 6.78681 6.86165 7.04042 7.10872 7.37130 7.70351 7.88586 8.50063 8.93513 9.53814 11.03160 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.006671 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.610054 B = 4196.381426 C = 4643.395312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.257 1.257 7 C -0.510 4.510 8 H 0.074 0.926 9 C 0.000 4.000 10 C 0.009 3.991 11 N -0.483 5.483 12 C 0.028 3.972 13 C -0.107 4.107 14 C -0.144 4.144 15 C -0.049 4.049 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.006 4.006 22 H 0.264 0.736 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.063 0.937 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.632 -6.721 10.790 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.548 4.548 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.120 4.120 11 N -0.205 5.205 12 C -0.099 4.099 13 C -0.126 4.126 14 C -0.163 4.163 15 C -0.049 4.049 16 C -0.130 4.130 17 C -0.139 4.139 18 C -0.141 4.141 19 C -0.139 4.139 20 C -0.128 4.128 21 C -0.135 4.135 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.142 -6.421 10.575 16.649 hybrid contribution -0.384 0.641 0.429 0.862 sum 10.758 -5.780 11.004 16.438 Atomic orbital electron populations 1.69909 1.06394 1.27075 1.50282 1.25005 0.94639 0.99215 0.93980 0.86880 0.80818 0.83428 0.78670 1.20266 1.21504 1.18142 1.20918 0.88265 0.94507 1.51129 0.90833 1.20512 0.96224 0.92753 0.92503 1.23785 0.92532 0.99489 0.96148 1.68767 1.31547 1.09831 1.10353 1.22217 0.96483 0.96471 0.94771 1.23267 0.98482 0.96852 0.93970 1.21597 0.96928 1.02981 0.94780 1.19078 0.95571 0.94862 0.95397 1.21239 0.96767 0.99397 0.95636 1.21061 0.96181 0.96550 1.00114 1.21170 0.99813 0.95839 0.97248 1.21085 0.96588 1.00153 0.96027 1.21413 0.96197 0.95995 0.99200 1.24383 0.92245 0.95766 1.01082 0.92626 0.92635 0.91560 0.92169 0.91021 0.91579 0.86476 0.86355 0.86147 0.86208 0.86276 0.86060 0.85783 0.91873 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.56 27.14 -169.99 -4.61 16.95 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.08 5.68 56.52 0.32 -5.76 16 7 C -0.51 -14.30 9.38 -34.44 -0.32 -14.63 16 8 H 0.07 2.23 8.06 -52.49 -0.42 1.80 16 9 C 0.00 -0.01 2.95 -91.24 -0.27 -0.28 16 10 C 0.01 0.19 7.24 -7.55 -0.05 0.13 16 11 N -0.48 -9.41 6.32 -246.09 -1.55 -10.97 16 12 C 0.03 0.46 3.57 -4.98 -0.02 0.44 16 13 C -0.11 -1.54 9.78 -36.21 -0.35 -1.89 16 14 C -0.14 -1.92 9.79 -37.57 -0.37 -2.29 16 15 C -0.05 -0.69 5.14 -105.01 -0.54 -1.23 16 16 C -0.11 -1.49 9.79 -39.19 -0.38 -1.87 16 17 C -0.12 -1.51 10.03 -39.63 -0.40 -1.90 16 18 C -0.12 -1.52 10.04 -39.50 -0.40 -1.92 16 19 C -0.12 -1.55 10.03 -39.64 -0.40 -1.95 16 20 C -0.11 -1.51 7.33 -39.19 -0.29 -1.80 16 21 C -0.01 -0.13 6.70 -7.55 -0.05 -0.18 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.06 1.34 7.04 -51.93 -0.37 0.97 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.06 1.23 7.87 -51.93 -0.41 0.83 16 26 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 27 H 0.07 1.15 4.01 -51.93 -0.21 0.94 16 28 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.59 6.35 -52.49 -0.33 1.26 16 35 H 0.06 1.46 7.38 -51.93 -0.38 1.08 16 36 H 0.06 1.36 7.11 -51.93 -0.37 0.99 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -30.32 295.08 -9.96 -40.28 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.08 Total: 3.27 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -3.94 Total: -27.35 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.78 Total: -37.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.61 Total: 16.95 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.32 -9.96 -40.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.871 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds