Wall clock time and date at job start Mon Mar 30 2020 05:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00135 * 2 1 4 4 H 1.48499 * 109.46696 * 269.99865 * 3 2 1 5 5 H 1.48495 * 109.46851 * 29.99576 * 3 2 1 6 6 H 1.48499 * 109.47294 * 149.99378 * 3 2 1 7 7 C 1.37877 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99948 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00106 * 180.02562 * 7 2 1 10 10 C 1.53516 * 114.16939 * 179.97438 * 9 7 2 11 11 N 1.47478 * 87.93405 * 220.13947 * 10 9 7 12 12 C 1.46890 * 110.99930 * 138.70578 * 11 10 9 13 13 C 1.50704 * 109.47255 * 170.00126 * 12 11 10 14 14 C 1.32560 * 119.99974 * 127.12716 * 13 12 11 15 15 C 1.47815 * 120.00402 * 8.51854 * 14 13 12 16 16 C 1.39533 * 120.13928 * 217.94455 * 15 14 13 17 17 C 1.37983 * 119.85313 * 180.02562 * 16 15 14 18 18 C 1.38348 * 120.14002 * 359.97438 * 17 16 15 19 19 C 1.38346 * 120.28729 * 0.02562 * 18 17 16 20 20 C 1.37972 * 120.14493 * 0.02562 * 19 18 17 21 21 C 1.47488 * 87.83253 * 27.01214 * 11 10 9 22 22 H 0.96993 * 120.00050 * 0.02562 * 1 2 3 23 23 H 1.08999 * 113.25826 * 312.94880 * 9 7 2 24 24 H 1.09007 * 113.47323 * 105.37483 * 10 9 7 25 25 H 1.08994 * 113.53270 * 334.92133 * 10 9 7 26 26 H 1.09003 * 109.47575 * 49.99932 * 12 11 10 27 27 H 1.09005 * 109.47545 * 290.00324 * 12 11 10 28 28 H 1.08002 * 119.99777 * 307.13655 * 13 12 11 29 29 H 1.08007 * 120.00035 * 188.50854 * 14 13 12 30 30 H 1.07988 * 120.07584 * 0.03559 * 16 15 14 31 31 H 1.07992 * 119.92841 * 180.02562 * 17 16 15 32 32 H 1.08004 * 119.85490 * 179.74608 * 18 17 16 33 33 H 1.08001 * 119.92618 * 179.97438 * 19 18 17 34 34 H 1.07993 * 120.07696 * 180.02562 * 20 19 18 35 35 H 1.08992 * 113.47388 * 87.75688 * 21 11 10 36 36 H 1.08998 * 113.46880 * 218.22214 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.1402 -2.5946 0.0023 11 7 5.1460 -2.0841 0.9524 12 6 5.4199 -3.0681 2.0081 13 6 6.6154 -2.6238 2.8110 14 6 6.5317 -2.5360 4.1310 15 6 5.3359 -3.0498 4.8317 16 6 4.8208 -2.3649 5.9329 17 6 3.7046 -2.8501 6.5829 18 6 3.0961 -4.0127 6.1446 19 6 3.6019 -4.6964 5.0535 20 6 4.7181 -4.2224 4.3954 21 6 4.1437 -1.0975 1.3967 22 1 -0.4850 0.8400 -0.0004 23 1 3.9423 -0.5119 -0.7319 24 1 4.5602 -2.8828 -0.9614 25 1 3.4924 -3.3619 0.4261 26 1 5.6261 -4.0383 1.5560 27 1 4.5523 -3.1496 2.6630 28 1 7.5402 -2.3769 2.3109 29 1 7.3374 -2.0891 4.6947 30 1 5.2946 -1.4570 6.2755 31 1 3.3047 -2.3208 7.4350 32 1 2.2250 -4.3906 6.6594 33 1 3.1225 -5.6037 4.7166 34 1 5.1118 -4.7568 3.5435 35 1 3.4964 -1.4645 2.1930 36 1 4.5669 -0.1169 1.6148 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597193628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:59 Heat of formation + Delta-G solvation = 62.950383 kcal Electronic energy + Delta-G solvation = -16902.909834 eV Core-core repulsion = 14352.697088 eV Total energy + Delta-G solvation = -2550.212746 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.02209 -39.97870 -36.05923 -34.62134 -32.12375 -31.56587 -30.01124 -27.51044 -26.69593 -24.48001 -23.41229 -22.77272 -20.53894 -20.03940 -19.10805 -17.53181 -16.94198 -16.53249 -16.40037 -15.87462 -15.69368 -15.36164 -14.89737 -14.45062 -14.34039 -14.13442 -13.50824 -13.44979 -13.31116 -12.95849 -12.74711 -12.16699 -11.95871 -11.88778 -11.85651 -11.51079 -11.44718 -11.13161 -10.66223 -10.62029 -9.95815 -9.65684 -9.10703 -8.30518 -6.35511 0.12240 0.49662 1.36769 1.38631 1.44748 1.51652 2.36672 2.92910 3.02817 3.30438 3.84816 3.93471 4.05330 4.09523 4.11552 4.22094 4.30108 4.35225 4.50542 4.58651 4.63077 4.67968 4.73055 4.87280 4.92729 5.01159 5.06659 5.16520 5.31786 5.42755 5.45840 5.52114 5.61055 5.62700 5.68435 5.88330 6.11307 6.26515 6.29000 6.69731 7.31314 8.85569 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.006671 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.610054 B = 4196.381426 C = 4643.395312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.016 3.984 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.239 1.239 7 C -0.515 4.515 8 H 0.033 0.967 9 C -0.015 4.015 10 C 0.017 3.983 11 N -0.473 5.473 12 C 0.030 3.970 13 C -0.123 4.123 14 C -0.130 4.130 15 C -0.072 4.072 16 C -0.124 4.124 17 C -0.129 4.129 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.124 4.124 21 C 0.006 3.994 22 H 0.266 0.734 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.131 0.869 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.046 0.954 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.630 -6.142 11.617 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.162 1.162 7 C -0.553 4.553 8 H 0.052 0.948 9 C -0.034 4.034 10 C -0.112 4.112 11 N -0.194 5.194 12 C -0.098 4.098 13 C -0.141 4.141 14 C -0.149 4.149 15 C -0.072 4.072 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.124 4.124 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.160 0.840 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.065 0.935 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.164 -5.863 11.402 18.376 hybrid contribution -1.073 0.329 0.231 1.146 sum 12.091 -5.534 11.633 17.668 Atomic orbital electron populations 1.70052 1.08297 1.28185 1.52172 1.25889 0.95384 1.03184 0.93682 0.85832 0.80013 0.78468 0.79265 1.19259 1.21353 1.16242 1.21138 0.90680 0.93020 1.50444 0.94842 1.20520 0.93505 0.95393 0.93977 1.23668 0.92565 0.97433 0.97529 1.68728 1.29801 1.10031 1.10887 1.22228 0.97218 0.96354 0.93978 1.23200 0.98188 0.98571 0.94186 1.21842 0.97031 1.01402 0.94627 1.19332 0.96322 0.95387 0.96140 1.21533 0.97180 0.99990 0.95510 1.21413 0.95963 0.96661 1.00690 1.21526 1.00395 0.95849 0.97135 1.21388 0.96624 1.00933 0.96339 1.21580 0.96676 0.96377 0.99558 1.24094 0.92499 0.96677 0.99095 0.92466 0.92212 0.89606 0.92812 0.89602 0.92669 0.85093 0.84034 0.84634 0.84002 0.84239 0.84642 0.85503 0.93545 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 2 C 0.02 0.95 5.47 84.65 0.46 1.41 16 3 Si 0.94 44.15 27.14 68.60 1.86 46.02 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.24 -10.43 5.68 99.48 0.56 -9.87 16 7 C -0.51 -29.42 9.38 25.60 0.24 -29.18 16 8 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 9 C -0.01 -0.69 2.95 -11.19 -0.03 -0.72 16 10 C 0.02 0.67 7.24 83.57 0.61 1.27 16 11 N -0.47 -17.51 6.32 -932.50 -5.89 -23.40 16 12 C 0.03 0.92 3.57 85.56 0.31 1.22 16 13 C -0.12 -3.24 9.78 24.54 0.24 -3.00 16 14 C -0.13 -3.18 9.79 23.66 0.23 -2.95 16 15 C -0.07 -1.92 5.14 -20.12 -0.10 -2.02 16 16 C -0.12 -3.08 9.79 22.52 0.22 -2.86 16 17 C -0.13 -3.01 10.03 22.24 0.22 -2.78 16 18 C -0.13 -3.08 10.04 22.32 0.22 -2.86 16 19 C -0.13 -3.37 10.03 22.23 0.22 -3.15 16 20 C -0.12 -3.30 7.33 22.52 0.16 -3.14 16 21 C 0.01 0.25 6.70 83.57 0.56 0.81 16 22 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 23 H 0.06 2.77 7.04 -2.39 -0.02 2.76 16 24 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 25 H 0.05 2.20 7.87 -2.39 -0.02 2.18 16 26 H 0.09 2.40 7.93 -2.39 -0.02 2.38 16 27 H 0.06 1.88 4.01 -2.38 -0.01 1.87 16 28 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 30 H 0.14 2.83 8.06 -2.92 -0.02 2.80 16 31 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.13 3.16 6.35 -2.91 -0.02 3.14 16 35 H 0.05 2.14 7.38 -2.39 -0.02 2.12 16 36 H 0.06 2.70 7.11 -2.39 -0.02 2.68 16 Total: -1.00 -65.26 295.08 0.74 -64.52 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.91 Total: 19.66 kcal Atomic # 6 Polarization: -51.52 SS G_CDS: 3.56 Total: -47.95 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -5.59 Total: -82.24 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.86 Total: 46.02 kcal Total: -65.26 0.74 -64.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.466 kcal (2) G-P(sol) polarization free energy of solvation -65.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds